BAC Information

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BAC

Clone NameB6Ng01-280O18
Chromosome2 (Build37)
Map Location 32,441,959 - 32,615,028
singlet/doubletdoublet
Overlap geneSt6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a
Upstream geneFubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3, 2810003C17Rik, Nup214, A130092J06Rik, LOC100040058, Ppapdc3, 5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1
Downstream geneTtc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280O18.bB6Ng01-280O18.g
ACCGA080531GA080532
length6251,143
definitionB6Ng01-280O18.b B6Ng01-280O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,614,404 - 32,615,028)(32,441,959 - 32,443,116)
sequence
gaattccaaaggagtccaagacactccactccccgcaacccggaacttct
tcccaagccaagaaaaatttccgaagagacacaatctatatccagatggc
accaaccccttgagacagatggtaaaagggtagttcagagaggtgcagag
acttgtccaaagtcacacagccagtcaacaggagaacaggggtacaaata
tgtactcaattgtctgttcatgagagctaagtgacttctgacaggggagg
tcagacctgccccccagtgttgacagctaagacagatcaggaacaacaga
tatcagagctgacagtcaccagggaatgcttgccaaagcaccatatgggg
ctaagagcttaagagaggatgctaacacagacacaggtaccctgtgtaat
atctgcccggggtaatccccaaggctcatgatgtctcggactcacaggca
acaagactgccaccacccctgttcctaacaggttctgaaggctgagcctc
caactggctgtgtgttttggagccctctctggattaggatggagaaaagg
gaccaggacacatctggcctaccttgtactgctcagtgcggctgggatgt
gggaaatggatgataggggagaagt

gaattccagtacttgggaggcagaggcaggctgatctctgtgagtccaag
gcctacagagcaagttccaggcaagccagggctacacagagaaaccctgt
cttgaaagcctaaaaccaaatcaaaccaccaacaacaaaacaacctgagc
cactaatcccagctcccaattctctagcagagatagctggatctcggtga
gtttgaagcctgcctgaaaaatgtggggtcctgtctcaaaaacacgtttc
ttcattgcctatctgatattcatagtcaagttcacatcatttgagctgac
aacccaacaactatcctgaaactcagggctgcttagtttgaagcctttgc
ttcatttcctatcccctgttacttcccgggtaatttcagaaatggagaac
ctcaattctccacggccagtagccatcacacgggtggctctcttactgtc
ttccttccaatcacacaaggactagagtgggaagacaaactagacaggcc
ccgccctcgacgtcgagacctcgcccccagcccggaggtctctgagacat
ccacgcgccgctagccggcgctgcgcaggccccgccccctgagcgcaaag
cctccgcccctcccagaggcccctcccacgcccccggctgcgctgctcta
gcttcaggcttcagaagctgcggccgcagcaccgcctcctacccggggcc
ccggttccagcccctctggcccggcgcactggacatggagctccgagcag
cgcatcctgagcccccagcgcactccaatccgctcgttcggttagcgccc
agcttggggaggggacggtggaagctagccgggtgaaaacctcacatcct
gcccgccccaggcttctccatcaccccgcggtagagagttgggatggatg
ggaacgatgttctcctggctcctggctttctttgcctgcctccgaccgaa
tggatgaccttgagccgagagcgtctcctctttgctctccttcccatctg
cacatgggaattgtttggcaagtctctgactccacgcccttagattggga
cacgtgtcacatgcttggaagacttaaggctttgatcctggcccggtttt
ctggatctgattgttcctccctgactcagtctctcatatcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_32614404_32615028
seq2: B6Ng01-280O18.b_49_673 (reverse)

seq1  ACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTAC  50

seq1  AAGGTAGGCCAGATGTGTCCTGGTCCCTTTTCTCCATCCTAATCCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGCCAGATGTGTCCTGGTCCCTTTTCTCCATCCTAATCCAGAGA  100

seq1  GGGCTCCAAAACACACAGCCAGTTGGAGGCTCAGCCTTCAGAACCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAAAACACACAGCCAGTTGGAGGCTCAGCCTTCAGAACCTGTTA  150

seq1  GGAACAGGGGTGGTGGCAGTCTTGTTGCCTGTGAGTCCGAGACATCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGGGTGGTGGCAGTCTTGTTGCCTGTGAGTCCGAGACATCATGA  200

seq1  GCCTTGGGGATTACCCCGGGCAGATATTACACAGGGTACCTGTGTCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGGATTACCCCGGGCAGATATTACACAGGGTACCTGTGTCTGTG  250

seq1  TTAGCATCCTCTCTTAAGCTCTTAGCCCCATATGGTGCTTTGGCAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCCTCTCTTAAGCTCTTAGCCCCATATGGTGCTTTGGCAAGCAT  300

seq1  TCCCTGGTGACTGTCAGCTCTGATATCTGTTGTTCCTGATCTGTCTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTGACTGTCAGCTCTGATATCTGTTGTTCCTGATCTGTCTTAGC  350

seq1  TGTCAACACTGGGGGGCAGGTCTGACCTCCCCTGTCAGAAGTCACTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACACTGGGGGGCAGGTCTGACCTCCCCTGTCAGAAGTCACTTAGC  400

seq1  TCTCATGAACAGACAATTGAGTACATATTTGTACCCCTGTTCTCCTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAACAGACAATTGAGTACATATTTGTACCCCTGTTCTCCTGTTG  450

seq1  ACTGGCTGTGTGACTTTGGACAAGTCTCTGCACCTCTCTGAACTACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGTGTGACTTTGGACAAGTCTCTGCACCTCTCTGAACTACCCTT  500

seq1  TTACCATCTGTCTCAAGGGGTTGGTGCCATCTGGATATAGATTGTGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATCTGTCTCAAGGGGTTGGTGCCATCTGGATATAGATTGTGTCTC  550

seq1  TTCGGAAATTTTTCTTGGCTTGGGAAGAAGTTCCGGGTTGCGGGGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAAATTTTTCTTGGCTTGGGAAGAAGTTCCGGGTTGCGGGGAGTGG  600

seq1  AGTGTCTTGGACTCCTTTGGAATTC  625
      |||||||||||||||||||||||||
seq2  AGTGTCTTGGACTCCTTTGGAATTC  625


seq1: chr2_32441959_32443116
seq2: B6Ng01-280O18.g_71_1213

seq1  GAATTCCAGTACTTGGGAGGCAGAGGCAGGCTGATCTCTGTGAGTCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACTTGGGAGGCAGAGGCAGGCTGATCTCTGTGAGTCCAAG  50

seq1  GCCTACAGAGCAAGTTCCAGGCAAGCCAGGGCTACACAGAGAAACCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGAGCAAGTTCCAGGCAAGCCAGGGCTACACAGAGAAACCCTGT  100

seq1  CTTGAAAGCCTAAAACCAAATCAAACCACCAACAACAAAACAACCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGCCTAAAACCAAATCAAACCACCAACAACAAAACAACCTGAGC  150

seq1  CACTAATCCCAGCTCCCAATTCTCTAGCAGAGATAGCTGGATCTCGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATCCCAGCTCCCAATTCTCTAGCAGAGATAGCTGGATCTCGGTGA  200

seq1  GTTTGAAGCCTGCCTGAAAAATGTGGGGTCCTGTCTCAAAAACACGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCCTGCCTGAAAAATGTGGGGTCCTGTCTCAAAAACACGTTTC  250

seq1  TTCATTGCCTATCTGATATTCATAGTCAAGTTCACATCATTTGAGCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCCTATCTGATATTCATAGTCAAGTTCACATCATTTGAGCTGAC  300

seq1  AACCCAACAACTATCCTGAAACTCAGGGCTGCTTAGTTTGAAGCCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACAACTATCCTGAAACTCAGGGCTGCTTAGTTTGAAGCCTTTGC  350

seq1  TTCATTTCCTATCCCCTGTTACTTCCCGGGTAATTTCAGAAATGGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCCTATCCCCTGTTACTTCCCGGGTAATTTCAGAAATGGAGAAC  400

seq1  CTCAATTCTCCACGGCCAGTAGCCATCACACGGGTGGCTCTCTTACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTCTCCACGGCCAGTAGCCATCACACGGGTGGCTCTCTTACTGTC  450

seq1  TTCCTTCCAATCACACAAGGACTAGAGTGGGAAGACAAACTAGACAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCAATCACACAAGGACTAGAGTGGGAAGACAAACTAGACAGGCC  500

seq1  CCGCCCTCGACGTCGAGACCTCGCCCCCAGCCCGGAGGTCTCTGAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCTCGACGTCGAGACCTCGCCCCCAGCCCGGAGGTCTCTGAGACAT  550

seq1  CCACGCGCCGCTAGCCGGCGCTGCGCAGGCCCCGCCCCCTGAGCGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCGCCGCTAGCCGGCGCTGCGCAGGCCCCGCCCCCTGAGCGCAAAG  600

seq1  CCTCCGCCCCTCCCAGAGGCCCCTCCCACGCCCCCGGCTGCGCTGCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCCCCTCCCAGAGGCCCCTCCCACGCCCCCGGCTGCGCTGCTCTA  650

seq1  GCTTCAGGCTTCAGAAGCTGCGGCCGCAGCACCGCCTCCTACCCGGGG-C  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTTCAGGCTTCAGAAGCTGCGGCCGCAGCACCGCCTCCTACCCGGGGCC  700

seq1  CCGGTTCCAGCCCCTCTGGCCCGGCGCACTGGACATGGAGCTCCGAGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTCCAGCCCCTCTGGCCCGGCGCACTGGACATGGAGCTCCGAGCAG  750

seq1  CGCATCCTGAGCCCCCAGCGCACTCCAATCCGCTCGTTCGGTTAGCGCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCCTGAGCCCCCAGCGCACTCCAATCCGCTCGTTCGGTTAGCGCCC  800

seq1  AGCTTGGGGAGGGGACGGTGGAAGCTAGCCGGGTGAAAACCTCACATCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGGAGGGGACGGTGGAAGCTAGCCGGGTGAAAACCTCACATCCT  850

seq1  GCCCGCCCCAGGCCTCTCCATCACCCCGCGGTAGAGAGTTGGGATGGATG  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCCCGCCCCAGGCTTCTCCATCACCCCGCGGTAGAGAGTTGGGATGGATG  900

seq1  GGAACGATGTTCTCCTGGCTCCTGGCTTTCTTTGCCTGCCTCCGACCGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACGATGTTCTCCTGGCTCCTGGCTTTCTTTGCCTGCCTCCGACCGAA  950

seq1  TGGATGACCTTGAGCCGAGAGCGTCTCCTCTTTGCCTCTCCTTCCCCATC  999
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGGATGACCTTGAGCCGAGAGCGTCTCCTCTTTG-CTCTCCTT-CCCATC  998

seq1  TGCACAATGGGAATTGGTTTGGCAAGGTCTCTGAACTCACGGCCTTTAGA  1049
      ||||| ||||||||| ||||||||| ||||||| ||||   ||| |||||
seq2  TGCAC-ATGGGAATT-GTTTGGCAA-GTCTCTG-ACTCCACGCCCTTAGA  1044

seq1  ATGGGACACGTTGTCACATGCTTGG-AGACTTAAAGGCTTTTGGTTCCTG  1098
       ||||||||| |||||||||||||| |||||| ||||||||  | |||| 
seq2  TTGGGACACG-TGTCACATGCTTGGAAGACTT-AAGGCTTT--GATCCT-  1089

seq1  GGCCCGTTTTTCTTGATCTGGATTTGTCTCTTCCCTTGCCTCAGTTTCTC  1148
      |||||| |||||| ||||||   |||| || |||| || |||||  ||||
seq2  GGCCCGGTTTTCTGGATCTG--ATTGT-TCCTCCC-TGACTCAG--TCTC  1133

seq1  TCATATCCTG  1158
      ||||||||||
seq2  TCATATCCTG  1143


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