BAC Information

Click to search

BAC

Clone NameB6Ng01-280P11
Chromosome2 (Build37)
Map Location 111,475,546 - 111,599,908
singlet/doubletdoublet
Overlap geneOlfr1298, Olfr1299, Olfr1300-ps1, Olfr1301
Upstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297
Downstream geneOlfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280P11.bB6Ng01-280P11.g
ACCGA080565GA080566
length9601,125
definitionB6Ng01-280P11.b B6Ng01-280P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,599,231 - 111,599,908)(111,475,546 - 111,476,674)
sequence
gaattctgctgaggacatgtattttcaagattttgggtacctttttggta
ttcttttgggggttcacctaggaatggaattactgagtcacagcttaagt
tcctttaacatttgaagaaattattaaagttctgttgaagtggctctatt
atatcattccaattcactgcatttttttcattttgagaattgcttacatg
tctgtactgtattttgttgaacacactcccctttccctcctttccagttc
ctctgctgttaccccatcacttttccttcccaactttatgctttctcatt
ttttagaaacccattgagtccacttgatgtttctgatatgtgcacaggtc
tagtggatcatgggcagcctctcaggttctgtacccctgaggaaaactgt
cccttttctgaaagtcatcagctgtcaatcactcctatgctattattatg
cttcatgagctcttccccaaaccatgctgggattttgcctgataggatct
tgtaaaggtcgttatgaatggagttaagctactatgagctcatatgtgct
atagttttgccatgtctgtcaaataccaatatttttttgtagatatccag
gatctgtttattaaaaatccctctgtcccctcttccataatgaccattgg
aggaagggtatatgataaagctgccccatttagtacagattatttcttca
agtgtattagtcttaaaaatatccttatatggctgtcatattttagcaaa
ctatgctgctagattcgtaaaagtcagatgatagggttgatgaggaaaaa
tgattgtactcaagtactcttgagtagagatctgggaagcctatagaaga
gaagaggtatatgtttttatttgaaaactttttatgattaaagggatatt
tattcaattaatttttgggttttcctgttatttcttttctatgaccttga
cattttctat
gaattctttggaaatataaaggtcaccaaagcattcatgagcaaaaacaa
acaaaaaaaaacacaaaagtacagattgtattatcatatatgagcttaag
ttatactatgaagcatgacaatgttatgattgtctaccattgtctaaaat
aatatatactagaagatgttgacttatgtccacaaacttacagtgccctg
attttcaaaaagataacaaaatagcatatgaaacagaaacagaatcttta
acaaatgttggtaaatctggatgcccccatgaagaatgaaattaaaacct
tatctcttatccttttaaagaaatcgactccagttgaattaaataaacta
aatataaaatttgaaactaataaactgcttgaatggcttttgagttttaa
ccaagtttacaggactgggtataaattatcacctgtatgagagacatcaa
aaaatagttcccattagactatggccaagtctgtgtatggtactggacac
atcttgtcaggtagttttgtattttcccatgcaagttctatcaatgggta
aggccattgaattcttttcattcccagtgtcctgagcaagttttagtacc
ataaatggtatcagataaagagaaaattcttagtcaatttgtgattgatt
tctctgtggcctgacagaaaagtgtgctgtttattcattaacagggaatt
tccaaatatatatggtgggcaaacagggagaaaggcaaaagtctgatttg
ttttagacacatctgcagcatcactgaccaacagcaacatgtgtgtactt
acaaatatgtttgttaaatatctaataaccattgaattcagtacaatagt
tttaataattagtcagggaaatggatactgtagtcatggagatataattt
aaggatgttatgcaatatgttaagcatgaactttctagttatattttact
atgacttagaaaataatttttttagatattttcttcatttacatttcaat
gctatcccaaaagaaccctatacctcccctgtctactccccaaccactca
ctcccacttcggagcctggcatggccctgtactggggcatatggatctca
cggatacagggaactcttctcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111599231_111599908
seq2: B6Ng01-280P11.b_47_724 (reverse)

seq1  TGGGGCAGCTTTATCATATACCCTTCCTCCAATGGTCATTATGGAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGCTTTATCATATACCCTTCCTCCAATGGTCATTATGGAAGAGG  50

seq1  GGACAGAGGGATTTTTAATAAACAGATCCTGGATATCTACAAAAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGGGATTTTTAATAAACAGATCCTGGATATCTACAAAAAAATAT  100

seq1  TGGTATTTGACAGACATGGCAAAACTATAGCACATATGAGCTCATAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTGACAGACATGGCAAAACTATAGCACATATGAGCTCATAGTAG  150

seq1  CTTAACTCCATTCATAACGACCTTTACAAGATCCTATCAGGCAAAATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTCCATTCATAACGACCTTTACAAGATCCTATCAGGCAAAATCCC  200

seq1  AGCATGGTTTGGGGAAGAGCTCATGAAGCATAATAATAGCATAGGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTTTGGGGAAGAGCTCATGAAGCATAATAATAGCATAGGAGTGA  250

seq1  TTGACAGCTGATGACTTTCAGAAAAGGGACAGTTTTCCTCAGGGGTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCTGATGACTTTCAGAAAAGGGACAGTTTTCCTCAGGGGTACAG  300

seq1  AACCTGAGAGGCTGCCCATGATCCACTAGACCTGTGCACATATCAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGAGGCTGCCCATGATCCACTAGACCTGTGCACATATCAGAAAC  350

seq1  ATCAAGTGGACTCAATGGGTTTCTAAAAAATGAGAAAGCATAAAGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGGACTCAATGGGTTTCTAAAAAATGAGAAAGCATAAAGTTGGG  400

seq1  AAGGAAAAGTGATGGGGTAACAGCAGAGGAACTGGAAAGGAGGGAAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGTGATGGGGTAACAGCAGAGGAACTGGAAAGGAGGGAAAGGG  450

seq1  GAGTGTGTTCAACAAAATACAGTACAGACATGTAAGCAATTCTCAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTTCAACAAAATACAGTACAGACATGTAAGCAATTCTCAAAATG  500

seq1  AAAAAAATGCAGTGAATTGGAATGATATAATAGAGCCACTTCAACAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGCAGTGAATTGGAATGATATAATAGAGCCACTTCAACAGAAC  550

seq1  TTTAATAATTTCTTCAAATGTTAAAGGAACTTAAGCTGTGACTCAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATTTCTTCAAATGTTAAAGGAACTTAAGCTGTGACTCAGTAAT  600

seq1  TCCATTCCTAGGTGAACCCCCAAAAGAATACCAAAAAGGTACCCAAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTAGGTGAACCCCCAAAAGAATACCAAAAAGGTACCCAAAATC  650

seq1  TTGAAAATACATGTCCTCAGCAGAATTC  678
      ||||||||||||||||||||||||||||
seq2  TTGAAAATACATGTCCTCAGCAGAATTC  678

seq1: chr2_111475546_111476674
seq2: B6Ng01-280P11.g_66_1190

seq1  GAATTCTTTGGAAATATAAAGGTCACCAAAGCATTCATGAGCAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAATATAAAGGTCACCAAAGCATTCATGAGCAAAAACAA  50

seq1  ACAAAAAAAAACACAAAAGTACAGATTGTATTATCATATATGAGCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAACACAAAAGTACAGATTGTATTATCATATATGAGCTTAAG  100

seq1  TTATACTATGAAGCATGACAATGTTATGATTGTCTACCATTGTCTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTATGAAGCATGACAATGTTATGATTGTCTACCATTGTCTAAAAT  150

seq1  AATATATACTAGAAGATGTTGACTTATGTCCACAAACTTACAGTGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACTAGAAGATGTTGACTTATGTCCACAAACTTACAGTGCCCTG  200

seq1  ATTTTCAAAAAGATAACAAAATAGCATATGAAACAGAAACAGAATCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAAAGATAACAAAATAGCATATGAAACAGAAACAGAATCTTTA  250

seq1  ACAAATGTTGGTAAATCTGGATGCCCCCATGAAGAATGAAATTAAAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTGGTAAATCTGGATGCCCCCATGAAGAATGAAATTAAAACCT  300

seq1  TATCTCTTATCCTTTTAAAGAAATCGACTCCAGTTGAATTAAATAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTATCCTTTTAAAGAAATCGACTCCAGTTGAATTAAATAAACTA  350

seq1  AATATAAAATTTGAAACTAATAAACTGCTTGAATGGCTTTTGAGTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAATTTGAAACTAATAAACTGCTTGAATGGCTTTTGAGTTTTAA  400

seq1  CCAAGTTTACAGGACTGGGTATAAATTATCACCTGTATGAGAGACATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTACAGGACTGGGTATAAATTATCACCTGTATGAGAGACATCAA  450

seq1  AAAATAGTTCCCATTAGACTATGGCCAAGTCTGTGTATGGTACTGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTCCCATTAGACTATGGCCAAGTCTGTGTATGGTACTGGACAC  500

seq1  ATCTTGTCAGGTAGTTTTGTATTTTCCCATGCAAGTTCTATCAATGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCAGGTAGTTTTGTATTTTCCCATGCAAGTTCTATCAATGGGTA  550

seq1  AGGCCATTGAATTCTTTTCATTCCCAGTGTCCTGAGCAAGTTTTAGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTGAATTCTTTTCATTCCCAGTGTCCTGAGCAAGTTTTAGTACC  600

seq1  ATAAATGGTATCAGATAAAGAGAAAATTCTTAGTCAATTTGTGATTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTATCAGATAAAGAGAAAATTCTTAGTCAATTTGTGATTGATT  650

seq1  TCTCTGTGGCCTGACAGAAAAGTGTGCTGTTTATTCATTAACAGGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGCCTGACAGAAAAGTGTGCTGTTTATTCATTAACAGGGAATT  700

seq1  TCCAAATATATATGGTGGGCAAACAGGGAGAAAGGCAAAAGTCTGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATATATGGTGGGCAAACAGGGAGAAAGGCAAAAGTCTGATTTG  750

seq1  TTTTAGACACATCTGCAGCATCACTGACCAACAGCAACATGTGTGTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGACACATCTGCAGCATCACTGACCAACAGCAACATGTGTGTACTT  800

seq1  ACAAATATGTTTGTTAAATATCTAATAACCATTGAATTCAGTACAATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGTTTGTTAAATATCTAATAACCATTGAATTCAGTACAATAGT  850

seq1  TTTAATAATTAGTCA-GGAAATGGATACTGTAGTCATGGAGATATAATTT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTAATAATTAGTCAGGGAAATGGATACTGTAGTCATGGAGATATAATTT  900

seq1  AAGGATGTTATGCAATATGTTAAGCATGAACTTTCTAGTTATATTTTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTTATGCAATATGTTAAGCATGAACTTTCTAGTTATATTTTACT  950

seq1  ATGACTTAG-AAATAATTTTTTTAGATATTTTCTTCATTTACATTTCAAA  998
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  ATGACTTAGAAAATAATTTTTTTAGATATTTTCTTCATTTACATTTC-AA  999

seq1  TGCTATCCCAAAAGAACCCTATACCCTCCCCCTGTCCTACTCCCCAACCC  1048
      |||||||||||||||||||||||||   ||||||| ||||||||||| ||
seq2  TGCTATCCCAAAAGAACCCTATACC--TCCCCTGT-CTACTCCCCAA-CC  1045

seq1  ACTCACTCCCACTTCCGAGCCCTGGCATTGCCCTGTACTGGGGCATAT-G  1097
      ||||||||||||||| ||| |||||||| ||||||||||||||||||| |
seq2  ACTCACTCCCACTTCGGAG-CCTGGCATGGCCCTGTACTGGGGCATATGG  1094

seq1  ATCTTCAC-GATACCAAGGGACTCTTCTCACAT  1129
      ||| |||| |||| || || |||||||||||||
seq2  ATC-TCACGGATA-CAGGGAACTCTTCTCACAT  1125