BAC Information

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BAC

Clone NameB6Ng01-281C01
Chromosome2 (Build37)
Map Location 75,436,947 - 75,437,759
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324
Downstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281C01.bB6Ng01-281C01.g
ACCGA080682GA080683
length1,026815
definitionB6Ng01-281C01.b B6Ng01-281C01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctaggcaggacggtgtaagaacggcactgctcttgttttaact
gcaaatcgctttgcactgaggtagaccatccgcacatacaaatattcaaa
tcatagtggaggagattggtggattttcatatgcaaacccctatggagcc
agcccccagcaaaggaaatggatgctatcagcaactccagaagccactgc
acactcctttctaagccggagtgaggctcagtggtagaactaaagccctc
gattcaatatccaccacctaacaacaagtaatataaccaataaatgcaaa
ggtgagatgaatagatagtgcccaaaagaactgccaataaatatatacaa
aaaaattaatgtccttagtcatcgggaaacttgagatcaaaactacactg
tttttccattttacccagtcagagtgactatcaaacagaaaacaaacaga
aaatgttagaacagatataggaagagatgccttacacgttgttggtggca
aagtaaggtagtccagccacaaaacaaagaccttgttatatgatccagct
ggccaatttctttagatacctaaaggaatctgtgtatgagtgtcaccaaa
aacatttgcacaccagtggttatcacaatactcagagttgtgaaatcagc
ctggatatccatcaacggaagaacggattaagaaaaacgtaatctatcca
ccccgtggagtattattccagggggaaagccccagatcctatctaccaac
aaatgggtataaccagatatcatcatgttacatgaaatgagccagacttg
gaaagccggacactccatttctaagtaagaagatccgatcacagtggatc
agagcaacgtcagaatccattcattttctttttcttagtcaagaacgttt
ccctttttgtgtaagaacatacttcacaaagctgatggggtagctccatc
tgtagagagcgcctccctgccagaacaagccttgggtttggtcccgagca
tcacatagagtgggtggtggttgtga
gaattccaatcttcaataaaaacccacccataagtaaaatcccctccacc
ccctgcaaggagtccgagggcctaggtgaagttgcacactttgtaaccta
gagactgtatgttttggtataagccctgtgaagagctgtggactgcagtg
taacgccaatgcttagattacctgttaaagagtgaagtagtaagggccta
ctgtctccttgcaacacttcatagaaaaggcaatatagctgcgttaaatt
caggaaggagaattgtttagttgcatctttgttaacaatttggaagcacc
cccattgtacgacttctgtaatgctattgagctggttttattaggggaaa
tttatagcaatgttagaaattaataccactcttatttcctccactgcctg
actttattgaatgccgtggggcatattaatcagtaaagccaagtagtgca
tgaaataaaagtataaattaacctgtaacatgaatgtaaaaagggcttaa
taaaataggaataaataacactttaatgatactcaacctgcccttcctga
gccaagcaaaaattgtgacaatgccaaacaccggctctaaagagccccat
ctggctacacaaagttaggtagaagtgtgcgcacacatggaagtcagaga
tgaccaggagccaggcatgagtgaatgcccctgaccggactctgagcagc
tccgcagaggaactcgggcgctggtctcattgcttttcaatattgaacag
ttaaaggtcctgaattttgtcgggtggctatggtttttgtttgggagata
tttggggtgttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75436947_75437759
seq2: B6Ng01-281C01.g_66_880

seq1  GAATTCCAATCTTCAATAAAAACCCACCCATAAGTAAAATCCCCTCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTTCAATAAAAACCCACCCATAAGTAAAATCCCCTCCACC  50

seq1  CCCTGCAAGGAGTCCGAGGGCCTAGGTGAAGTTGCACACTTTGTAACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAAGGAGTCCGAGGGCCTAGGTGAAGTTGCACACTTTGTAACCTA  100

seq1  GAGACTGTATGTTTTGGTATAAGCCCTGTGAAGAGCTGTGGACTGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTATGTTTTGGTATAAGCCCTGTGAAGAGCTGTGGACTGCAGTG  150

seq1  TAACGCCAATGCTTAGATTACCTGTTAAAGAGTGAAGTAGTAAGGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCCAATGCTTAGATTACCTGTTAAAGAGTGAAGTAGTAAGGGCCTA  200

seq1  CTGTCTCCTTGCAACACTTCATAGAAAAGGCAATATAGCTGCGTTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTTGCAACACTTCATAGAAAAGGCAATATAGCTGCGTTAAATT  250

seq1  CAGGAAGGAGAATTGTTTAGTTGCATCTTTGTTAACAATTTGGAAGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAGAATTGTTTAGTTGCATCTTTGTTAACAATTTGGAAGCACC  300

seq1  CCCATTGTACGACTTCTGTAATGCTATTGAGCTGGTTTTATTAGGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTACGACTTCTGTAATGCTATTGAGCTGGTTTTATTAGGGGAAA  350

seq1  TTTATAGCAATGTTAGAAATTAATACCACTCTTATTTCCTCCACTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCAATGTTAGAAATTAATACCACTCTTATTTCCTCCACTGCCTG  400

seq1  ACTTTATTGAATGCCGTGGGGCATATTAATCAGTAAAGCCAAGTAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGAATGCCGTGGGGCATATTAATCAGTAAAGCCAAGTAGTGCA  450

seq1  TGAAATAAAAGTATAAATTAACCTGTAACATGAATGTAAAAAGGGCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAAGTATAAATTAACCTGTAACATGAATGTAAAAAGGGCTTAA  500

seq1  TAAAATAGGAATAAATAACACTTTAATGATACTCAACCTGCCCTTCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGAATAAATAACACTTTAATGATACTCAACCTGCCCTTCCTGA  550

seq1  GCCAAGCAAAAATTGTGACAATGCCAAACACCGGCTCTAAAGAGCCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCAAAAATTGTGACAATGCCAAACACCGGCTCTAAAGAGCCCCAT  600

seq1  CTGGCTACACAAAGTTAGGTAGAAGTGTGCGCACACATGGAAGTCAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACACAAAGTTAGGTAGAAGTGTGCGCACACATGGAAGTCAGAGA  650

seq1  TGACCAGGAGCCAGGCATGAGTGAATGCCCCTGACCGGACTCTGAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGAGCCAGGCATGAGTGAATGCCCCTGACCGGACTCTGAGCAGC  700

seq1  TCCGCAGAGGAACTCGGGCGCTGGTCTCATTGCTTTTCAATATTGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGAGGAACTCGGGCGCTGGTCTCATTGCTTTTCAATATTGAACAG  750

seq1  TT-AAGGTCCTGAATTTTGTCGGGTGGCTATGGTTTTTGTTTGGGAGATA  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCCTGAATTTTGTCGGGTGGCTATGGTTTTTGTTTGGGAGATA  800

seq1  TTT-GGGTGTTTTTA  813
      ||| |||||||||||
seq2  TTTGGGGTGTTTTTA  815