BAC Information

Click to search

BAC

Clone NameB6Ng01-281C17
Chromosome2 (Build37)
Map Location 12,536,590 - 12,661,798
singlet/doubletdoublet
Overlap genenone
Upstream geneIl2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
Downstream geneLOC100040837, Pter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281C17.bB6Ng01-281C17.g
ACCGA080714GA080715
length1,141991
definitionB6Ng01-281C17.b B6Ng01-281C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,660,661 - 12,661,798)(12,536,590 - 12,537,141)
sequence
gaattcttgctgttattttctatggagtagaggttttcctttgttatgtt
ttgttgtttactgttttttaaatcattgcccatgactacatcatgaaatg
ttcgcctacatttacatccagtagttttagagaatcaggtctaataatga
ggcctttgactccctttgaagggagctttgtgcagggtaagagatatgga
tctagttctactcatttacatgtggatgtccagtttttccaatactgcat
tgaaagaggctcatttttctttagtgtagatttttatacctttgtcaaaa
ggtaggtggatgagacttttctctggtgtggctgctttgaagttgcatgt
actccttcctttaaataacctctgtatgaatcaaatctcattggtttctt
gttgatacctattgctataaagagtcaccaggaacaagtcgattcttttt
ttttttaagcttataactgtgaacttgcttatagttttagaggattagtc
agtaatcaaagctggaagcagacaggcatggtgttgaagaagaacctggg
acccttacaacctgatctgtgtgttggatgagacactgtggctggtgtgg
gaattttaaaacctcaaagaccacactcagtgacatactttcttcaacaa
ggccacaccccgaatccttcccaaacagtcccacctcaagataactaaac
acttaaatatatgagtcatcaggggactttttcattcaacactactgcat
tccccaaattggacttgggtggagttgggctttgctttgccattggtgtc
acaattgcttgtgaaaggcagtaatgtgcttgttaaagaatacttccttc
aggaaattagagacctgatttcaattttctgtttctactgtttgcaccca
gttactttttagtctaaatgcccttgtgtgtgaatagagatagcaatatt
aaacaaaattctatagtttttatgaggtgaaattatatatgtgtgttttg
caaattgcaaagcatcacatggggctgagagatggctcagtggtttaaga
gcactgactgtttcttctagaatcttgagttaagttcccagcaaacccac
atgaatggcctcacaaacttatctgtattgaatcctcatgc
gaattcaaggagaaaatacaattagaatttttttataagacaagattatg
cccctcgactcgagccccgggctaccttgccagcagagtcttgcccaaca
cccgcaagggcccacacgggactcctcacgggatcctaagacctctggtg
agtggaacatagcgcctgccccaatccaatcgcgcggaacctgagactgc
agtacatagggaagcaggctacccgggcttgatctggggcacaaacccct
tccgctccactcgagccccgggctaccttgccagcagagtcgcctgacac
ccgcaagggcccacacaggattccacacgagatcctaagacctctagtga
gtggaacacaacttctgctaggagtctggttcgaacaccagatatctggg
tacctgccctgcaagaagagagcttgcctgcagagaatactctgcccact
gaaactaaagagagtgctaccctccaggtctgcttatagaggctaacaga
gtcacctgaagaacaagctcttaacagtgacaactaaaacagctagcttc
agagattaccagatggcgaaaggcaaacgtaagaatcctactaacagaaa
tcaagaccactcaccatcatcagaacgcagcactcccaccccacctagtc
ctgggcaccccaacacaaccgaaaatctagacacagatttaaaaacattt
ctaatgatgatgatagaggacatcaagaaggactttcataagtcacttaa
agaattacaggagagcactgctaaagagttacaggcccttaaagaaaagc
aggaaaacacagccaaacaggtagaaatcattaaagaaaaacaggaaaac
acatccaaacaggtgatgggaaatgaacaaaaccatactagaactaaaag
gggaagtagacacaataaagaaaacccaaagcgaggcaacgctggagata
gaaaacctaggaaagagatctggaccatagatgcgagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_12660661_12661798
seq2: B6Ng01-281C17.b_44_1184 (reverse)

seq1  GCATGAGATCCCATTACAGATA--GTTGTGA-GCCA-TCATGTGG--TTG  44
      |||||||    || ||||||||   |||||| |||| ||||||||  |||
seq2  GCATGAGGATTCAATACAGATAAGTTTGTGAGGCCATTCATGTGGGTTTG  50

seq1  CTGGGACTTAAACTCAGGAATTCTAG-AGAAACAGTCAGTGCTCTT-AAC  92
      ||||||  | |||||| | ||||||| ||||||||||||||||||| |||
seq2  CTGGGAACTTAACTCAAG-ATTCTAGAAGAAACAGTCAGTGCTCTTAAAC  99

seq1  CACTGAGCCATCTCTCCAGCCCCCATGTGATGCTTTTGCAATTTGCAAAA  142
      ||||||||||||||| ||| ||||||||||||| ||||||||||||||||
seq2  CACTGAGCCATCTCT-CAG-CCCCATGTGATGC-TTTGCAATTTGCAAAA  146

seq1  CACACATATTATAATTTCACCCTCATAAAAACTATAGAATTTTGTTTAAT  192
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  CACACATA-TATAATTTCA-CCTCATAAAAACTATAGAATTTTGTTTAAT  194

seq1  ATTGCTATCTCTATTCACACACAAGGGCATTTAGACTAAAAAGTAACTGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATCTCTATTCACACACAAGGGCATTTAGACTAAAAAGTAACTGG  244

seq1  GTGCAAACAGTAGAAACAGAAAATTGAAATCAGGTCTCTAATTTCCTGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACAGTAGAAACAGAAAATTGAAATCAGGTCTCTAATTTCCTGAA  294

seq1  GGAAGTATTCTTTAACAAGCACATTACTGCC-TTCACAAGCAATTGTGAC  341
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAAGTATTCTTTAACAAGCACATTACTGCCTTTCACAAGCAATTGTGAC  344

seq1  ACCAATGGCAAAGCAAAGCCCAACTCCACCCAAGTCCAATTTGGGGAATG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGCAAAGCAAAGCCCAACTCCACCCAAGTCCAATTTGGGGAATG  394

seq1  CAGTAGTGTTGAATGAAAAAGTCCCCTGATGACTCATATATTTAAGTGTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGTTGAATGAAAAAGTCCCCTGATGACTCATATATTTAAGTGTT  444

seq1  TAGTTATCTTGAGGTGGGACTGTTTGGGAAGGATTCGGGGTGTGGCCTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCTTGAGGTGGGACTGTTTGGGAAGGATTCGGGGTGTGGCCTTG  494

seq1  TTGAAGAAAGTATGTCACTGAGTGTGGTCTTTGAGGTTTTAAAATTCCCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAGTATGTCACTGAGTGTGGTCTTTGAGGTTTTAAAATTCCCA  544

seq1  CACCAGCCACAGTGTCTCATCCAACACACAGATCAGGTTGTAAGGGTCCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCACAGTGTCTCATCCAACACACAGATCAGGTTGTAAGGGTCCC  594

seq1  AGGTTCTTCTTCAACACCATGCCTGTCTGCTTCCAGCTTTGATTACTGAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCTTCAACACCATGCCTGTCTGCTTCCAGCTTTGATTACTGAC  644

seq1  TAATCCTCTAAAACTATAAGCAAGTTCACAGTTATAAGCTTAAAAAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCTAAAACTATAAGCAAGTTCACAGTTATAAGCTTAAAAAAAAA  694

seq1  AAGAATCGACTTGTTCCTGGTGACTCTTTATAGCAATAGGTATCAACAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCGACTTGTTCCTGGTGACTCTTTATAGCAATAGGTATCAACAAG  744

seq1  AAACCAATGAGATTTGATTCATACAGAGGTTATTTAAAGGAAGGAGTACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATGAGATTTGATTCATACAGAGGTTATTTAAAGGAAGGAGTACA  794

seq1  TGCAACTTCAAAGCAGCCACACCAGAGAAAAGTCTCATCCACCTACCTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTTCAAAGCAGCCACACCAGAGAAAAGTCTCATCCACCTACCTTT  844

seq1  TGACAAAGGTATAAAAATCTACACTAAAGAAAAATGAGCCTCTTTCAATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAGGTATAAAAATCTACACTAAAGAAAAATGAGCCTCTTTCAATG  894

seq1  CAGTATTGGAAAAACTGGACATCCACATGTAAATGAGTAGAACTAGATCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGGAAAAACTGGACATCCACATGTAAATGAGTAGAACTAGATCC  944

seq1  ATATCTCTTACCCTGCACAAAGCTCCCTTCAAAGGGAGTCAAAGGCCTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTACCCTGCACAAAGCTCCCTTCAAAGGGAGTCAAAGGCCTCA  994

seq1  TTATTAGACCTGATTCTCTAAAACTACTGGATGTAAATGTAGGCGAACAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGACCTGATTCTCTAAAACTACTGGATGTAAATGTAGGCGAACAT  1044

seq1  TTCATGATGTAGTCATGGGCAATGATTTAAAAAACAGTAAACAACAAAAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATGTAGTCATGGGCAATGATTTAAAAAACAGTAAACAACAAAAC  1094

seq1  ATAACAAAGGAAAACCTCTACTCCATAGAAAATAACAGCAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGGAAAACCTCTACTCCATAGAAAATAACAGCAAGAATTC  1141

seq1: chr2_12536590_12537141
seq2: B6Ng01-281C17.g_64_615

seq1  GAATTCAAGGAGAAAATACAATTAGAATTTTTTTATAAGACAAGATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAGAAAATACAATTAGAATTTTTTTATAAGACAAGATTATG  50

seq1  CCCCTCGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACA  100

seq1  CCCGCAAGGGCCCACACGGGACTCCTCACGGGATCCTAAGACCTCTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAGGGCCCACACGGGACTCCTCACGGGATCCTAAGACCTCTGGTG  150

seq1  AGTGGAACATAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAACATAGCGCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGC  200

seq1  AGTACATAGGGAAGCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGGGAAGCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCT  250

seq1  TCCGCTCCACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCGCCTGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCCACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCGCCTGACAC  300

seq1  CCGCAAGGGCCCACACAGGATTCCACACGAGATCCTAAGACCTCTAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGGGCCCACACAGGATTCCACACGAGATCCTAAGACCTCTAGTGA  350

seq1  GTGGAACACAACTTCTGCTAGGAGTCTGGTTCGAACACCAGATATCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACACAACTTCTGCTAGGAGTCTGGTTCGAACACCAGATATCTGGG  400

seq1  TACCTGCCCTGCAAGAAGAGAGCTTGCCTGCAGAGAATACTCTGCCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCCTGCAAGAAGAGAGCTTGCCTGCAGAGAATACTCTGCCCACT  450

seq1  GAAACTAAAGAGAGTGCTACCCTCCAGGTCTGCTTATAGAGGCTAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGAGAGTGCTACCCTCCAGGTCTGCTTATAGAGGCTAACAGA  500

seq1  GTCACCTGAAGAACAAGCTCTTAACAGTGACAACTAAAACAGCTAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGAAGAACAAGCTCTTAACAGTGACAACTAAAACAGCTAGCTTC  550

seq1  AG  552
      ||
seq2  AG  552