BAC Information

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BAC

Clone NameB6Ng01-281F22
Chromosome2 (Build37)
Map Location 73,598,576 - 73,742,066
singlet/doubletdoublet
Overlap geneAtf2
Upstream gene6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
Downstream geneAtp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281F22.bB6Ng01-281F22.g
ACCGA080866GA080867
length1,143370
definitionB6Ng01-281F22.b B6Ng01-281F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,598,576 - 73,599,369)(73,741,691 - 73,742,066)
sequence
gaattccatctgcagttgaaacaaggccagattttccccagcggcagctc
gccacatttgaagtgaactccataaggaggttatctgacgttaatcacct
tctttgaaggggagggggatactgccaggagagatctggctcatagtcta
aaaaggcttaaattgttaaaaaaaaaatccttaaatgccatattctgtga
acctccaaggtttctgaagaccatctatctatctaccctatacgtaaatt
gtttgtttttagaaatttactacttgattaagctaggaagtatattttgt
gataaactagtctagtatctaacgtgaccaagagtttgattaactactaa
ttcatattacttaattatcttaaacagcttgaaatagcagctttaaaagg
gactagaacttcatattacattattaataatcacctaagtacccaaaata
agagttgaaaacatgtatacaggggttggacagatggttcaccagttaag
agaacggtctgctcttctagaggtcctgagttcaattcccagcaaccaca
tgatggctcacaaccatttctcctgggatcttatgccctcttctggcctg
caagcatacatgcagatagaacactcatatacattaaaaaaaaaaaatct
ttaaaaaaatgtattcatagtatgttttatacaaagatctataccaatgc
aacaaaatgcaaccttaatatgtaacaatatacaaatatctataacaatg
taagattattggctataaaatattctttggtttaagagtagattcaataa
tctactttttcctagtcttcctttattatttctgtatctacccctttttg
ctattactgctatattatttctacatctcccttttcctccccaactcctt
tccctttacccgaggaagaaaggatagagaaaagaaaaaaagagagaaat
ccttgagtctagcttcctataccttttttttttaatcaagaccatttact
aacttgtaagcaatccttttagagtgagagcatccatcacccatagaatg
accaaaactaccctcccccccttaaaagaataggacattgtttctcttaa
aatggcttcctgctgattttggaggttaagctttctttgaggg
cattacagatggttgtgagccaccatgtggttgctgggaattgaactcag
gacctctggaagagcagtcagtactcttaaccgctgagccatctctccag
cctgaggttttattttttattgagaaatattgaaagcatcttgttttctg
ggggcagggaggtaggggaagggggaatttattgctctttcagaggagac
ctaagtacaattcccagtttccacttgagtctgctcacaactgcttctta
cttacatccagaggctccaacacctgccctcttctggtctctacgggtac
tgaactcaagtgcacagagacacatacacacccacagagagagagataga
gagagagagatagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_73598576_73599369
seq2: B6Ng01-281F22.b_398_1189

seq1  TCATATTACTTAATTATCTTAAACAGCTTGAAATAGCAGCTTTAAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTACTTAATTATCTTAAACAGCTTGAAATAGCAGCTTTAAAAGGG  50

seq1  ACTAGAACTTCATATTACATTATTAATAATCACCTAAGTACCCAAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACTTCATATTACATTATTAATAATCACCTAAGTACCCAAAATAA  100

seq1  GAGTTGAAAACATGTATACAGGGGTTGGACAGATGGTTCACCAGTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAACATGTATACAGGGGTTGGACAGATGGTTCACCAGTTAAGA  150

seq1  GAACGGTCTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGTCTGCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACAT  200

seq1  GATGGCTCACAACCATTTCTCCTGGGATCTTATGCCCTCTTCTGGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCACAACCATTTCTCCTGGGATCTTATGCCCTCTTCTGGCCTGC  250

seq1  AAGCATACATGCAGATAGAACACTCATATACATTAAAAAAAAAAAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATACATGCAGATAGAACACTCATATACATTAAAAAAAAAAAATCTT  300

seq1  TAAAAAAATGTATTCATAGTATGTTTTATACAAAGATCTATACCAATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGTATTCATAGTATGTTTTATACAAAGATCTATACCAATGCA  350

seq1  ACAAAATGCAACCTTAATATGTAACAATATACAAATATCTATAACAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGCAACCTTAATATGTAACAATATACAAATATCTATAACAATGT  400

seq1  AAGATTATTGGCTATAAAATATTCTTTGGTTTAAGAGTAGATTCAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATTGGCTATAAAATATTCTTTGGTTTAAGAGTAGATTCAATAAT  450

seq1  CTACTTTTTCCTAGTCTTCCTTTATTATTTCTGTATCTACCCCTTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTTCCTAGTCTTCCTTTATTATTTCTGTATCTACCCCTTTTTGC  500

seq1  TATTACTGCTATATTATTTCTACATCTCCCTTTTCCTCCCCAACTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGCTATATTATTTCTACATCTCCCTTTTCCTCCCCAACTCCTTT  550

seq1  CCCTTTACCCGAGGAAGAAAGGATAGAGAAAAGAAAAAAAGAGAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACCCGAGGAAGAAAGGATAGAGAAAAGAAAAAAAGAGAGAAATC  600

seq1  CTTGAGTCTAGCTTCCTATACCTTTTTTTTTTAATCAAGACCATTTACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTAGCTTCCTATACCTTTTTTTTTTAATCAAGACCATTTACTA  650

seq1  ACTTGTAAGCAATCCTTTTAGAGTGAGAAGCATCCATCACCCAATAGAAT  700
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  ACTTGTAAGCAATCCTTTTAGAGTGAG-AGCATCCATCACCC-ATAGAAT  698

seq1  GACCAAAACCTACCCT-CCCCCCTTAAAAGAATAGGACATTG-TTCTCTT  748
      |||||||| ||||||| ||||||||||||||||||||||||| |||||||
seq2  GACCAAAA-CTACCCTCCCCCCCTTAAAAGAATAGGACATTGTTTCTCTT  747

seq1  AAAATTGCTTCCTGCTGATTTTGGAGTGTAGGTTTTCTTTTGAGGG  794
      ||||| ||||||||||||||||||||  || | |||| ||||||||
seq2  AAAATGGCTTCCTGCTGATTTTGGAGGTTAAGCTTTC-TTTGAGGG  792

seq1: chr2_73741691_73742066
seq2: B6Ng01-281F22.g_65_440 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTATGTG  50
      ||||||||| ||||||||||||| |||||||||||||| |||||||||||
seq2  TCTCTCTCTATCTCTCTCTCTCTATCTCTCTCTCTGTGGGTGTGTATGTG  50

seq1  TCTCTGTGCACTTGAGTTCAGTACCCGTAGAGACCAGAAGAGGGCAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGCACTTGAGTTCAGTACCCGTAGAGACCAGAAGAGGGCAGGTG  100

seq1  TTGGAGCCTCTGGATGTAAGTAAGAAGCAGTTGTGAGCAGACTCAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCCTCTGGATGTAAGTAAGAAGCAGTTGTGAGCAGACTCAAGTGG  150

seq1  AAACTGGGAATTGTACTTAGGTCTCCTCTGAAAGAGCAATAAATTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGAATTGTACTTAGGTCTCCTCTGAAAGAGCAATAAATTCCCCC  200

seq1  TTCCCCTACCTCCCTGCCCCCAGAAAACAAGATGCTTTCAATATTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTACCTCCCTGCCCCCAGAAAACAAGATGCTTTCAATATTTCTCA  250

seq1  ATAAAAAATAAAACCTCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAAACCTCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGTAC  300

seq1  TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  350

seq1  GCTCACAACCATCTGTAATGGAATTC  376
      ||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGTAATGGAATTC  376