BAC Information

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BAC

Clone NameB6Ng01-281O23
Chromosome2 (Build37)
Map Location 48,858,529 - 48,859,645
singlet/doubletsinglet
Overlap geneLOC100041508
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l
Downstream geneMbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281O23.bB6Ng01-281O23.g
ACCGA081284GA081285
length7301,142
definitionB6Ng01-281O23.b B6Ng01-281O23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaactgaggaatcttgaatggatgagaagcacctaaagaaatg
ttcaaagtccttagtgatgagagaaatgcaaatcaaacaactctgagatt
ccaccttccaccaattagaatgtctaagatcaaaacttcaggtgacaaca
cacgttgaagaggatgtggagaaagaggaacactcctccattgctggtgg
gattgcaaactggtacaaccactctgtaaataaatctggaggttcctcag
aaaattggaaataaatctacctgaagacccagctataccactcttgggaa
tatacccaaaagatgccccaccatgccacaggggcacatgttctactatg
tttatagcatctttatttgtgatagccagaagctggaaacaacctagata
tcctatgagagaagaatggatatagaaaatgtggttcatttacacaatgg
aatactactcagctattaagaagaaagacatactgagtgaagtaactcag
acctaaaaggacatacacactaataagtgggtattagcaaacaaacaaac
aaaacaaaaacaaaaaaaaaacctacccccccaaaaaaaacaaccccaaa
acccatacagaatatacaagatagagtctacagaattcaaaaggctcaac
aaactgaagtgcccaagtgaggacacctcagttccacttgggagaaagaa
agcaatcataagtggggagggagggaggga
gaattccagatacaatacagtgcacaccactacaggacacaattaaatta
ccatcttgaatgcatattgatctgataggtgaataacttcttttcaacac
agacctattgttcccttgtatcatttcactgtggatctgtataaattctt
agacattctgaatcattctacttggatttattctgctgcgtcattttgtg
agtctttcccttgctcaatccttccatacttattttgtttttaaggaaat
gtttcctacttctgcataaaaccagaggccttcttgaaagctcctatatg
agaagctagcacatttctctagctctaaacctctctagttttagactgaa
actgctccctccagaccccacctgaaatatcaaacacatctgagatttac
aggtcttaccattcatgtcttctgtggtacataatcatcaccctgtcaag
tctccatcacttaactttcttccttctgtttgttctactaggtctccttc
gctttttcctatctcagaactgccagcatcggattcttgattacttctct
gttccaccattgtcttcatttttttacccttttatttcttctctaattga
tatcagcttattgatttatttgttgtcattcaacgattacttatcaccac
ctcatataactggatatgctatgctttgtttttaaaaatgtggctcgttt
gttataaccttttctacatttgaagaataagaatatcagccttatacatg
tctaacttacacttacctttcttggtttacagataatcttgtggaaggat
atttatatgcattttgctattccaaaggatctctttgctgatagcttttg
ccaaatggatagttttgtttttaaagaaattaatatgttgtttatacaat
attttactaataattatactagcacttggttaggttttaataaacatgat
tttcttttattaattcttcacaaggtgcttcatggagggaagctaagggc
acaaagtttgtttaaagttcatttcaatattagttgaataaggaatcctc
acttttcattttttaatttccatgttttgggagatcttgtttctaatcat
tctataattaatatcaaattatttcatttttaatctttttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_48858529_48859645
seq2: B6Ng01-281O23.g_71_1212

seq1  GAATTCCAGATACAATACAGTGCACACCACTACAGGACACAATTAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATACAATACAGTGCACACCACTACAGGACACAATTAAATTA  50

seq1  CCATCTTGAATGCATATTGATCTGATAGGTGAATAACTTCTTTTCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGAATGCATATTGATCTGATAGGTGAATAACTTCTTTTCAACAC  100

seq1  AGACCTATTGTTCCCTTGTATCATTTCACTGTGGATCTGTATAAATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATTGTTCCCTTGTATCATTTCACTGTGGATCTGTATAAATTCTT  150

seq1  AGACATTCTGAATCATTCTACTTGGATTTATTCTGCTGCGTCATTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCTGAATCATTCTACTTGGATTTATTCTGCTGCGTCATTTTGTG  200

seq1  AGTCTTTCCCTTGCTCAATCCTTCCATACTTATTTTGTTTTTAAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCCCTTGCTCAATCCTTCCATACTTATTTTGTTTTTAAGGAAAT  250

seq1  GTTTCCTACTTCTGCATAAAACCAGAGGCCTTCTTGAAAGCTCCTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTACTTCTGCATAAAACCAGAGGCCTTCTTGAAAGCTCCTATATG  300

seq1  AGAAGCTAGCACATTTCTCTAGCTCTAAACCTCTCTAGTTTTAGACTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGCACATTTCTCTAGCTCTAAACCTCTCTAGTTTTAGACTGAA  350

seq1  ACTGCTCCCTCCAGACCCCACCTGAAATATCAAACACATCTGAGATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCCTCCAGACCCCACCTGAAATATCAAACACATCTGAGATTTAC  400

seq1  AGGTCTTACCATTCATGTCTTCTGTGGTACATAATCATCACCCTGTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTACCATTCATGTCTTCTGTGGTACATAATCATCACCCTGTCAAG  450

seq1  TCTCCATCACTTAACTTTCTTCCTTCTGTTTGTTCTACTAGGTCTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCACTTAACTTTCTTCCTTCTGTTTGTTCTACTAGGTCTCCTTC  500

seq1  GCTTTTTCCTATCTCAGAACTGCCAGCATCGGATTCTTGATTACTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCCTATCTCAGAACTGCCAGCATCGGATTCTTGATTACTTCTCT  550

seq1  GTTCCACCATTGTCTTCATTTTTTTACCCTTTTATTTCTTCTCTAATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCATTGTCTTCATTTTTTTACCCTTTTATTTCTTCTCTAATTGA  600

seq1  TATCAGCTTATTGATTTATTTGTTGTCATTCAACGATTACTTATCACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTTATTGATTTATTTGTTGTCATTCAACGATTACTTATCACCAC  650

seq1  CTCATATAACTGGATATGCTATGCTTTGTTTTTAAAAATGTGGCTCG-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCATATAACTGGATATGCTATGCTTTGTTTTTAAAAATGTGGCTCGTTT  700

seq1  GTTATAACCTTTTCTACATTTGAAGAATAAGAATATCAGCCTTATACATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACCTTTTCTACATTTGAAGAATAAGAATATCAGCCTTATACATG  750

seq1  TCTAACTTACACTTACCTTTCTTGGTTTACAGATAATCTTGTGGAAAGGA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTAACTTACACTTACCTTTCTTGGTTTACAGATAATCTTGTGG-AAGGA  799

seq1  TATTTATATGCA-TTTGCTATTCCAAAGGATCTCTTTGCTGATAGCTTTT  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATTTATATGCATTTTGCTATTCCAAAGGATCTCTTTGCTGATAGCTTTT  849

seq1  GCCAAATGGATAGTTTGTTTTTAAAAGAAATTAATATGTTGTTTATACAA  898
      ||||||||||||||||  |||| ||||||||||||||||||||||||| |
seq2  GCCAAATGGATAGTTTTGTTTTTAAAGAAATTAATATGTTGTTTATAC-A  898

seq1  ATATTTTACTAATAATTATACTAGCACTT-GTTAGGTTTT-ATAAACATG  946
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  ATATTTTACTAATAATTATACTAGCACTTGGTTAGGTTTTAATAAACATG  948

seq1  ATTTTCTTTTAT--AATCTTCACAA-GTGC-TCATG--AGGAAGCTAA-G  989
      ||||||||||||  | ||||||||| |||| |||||   ||||||||| |
seq2  ATTTTCTTTTATTAATTCTTCACAAGGTGCTTCATGGAGGGAAGCTAAGG  998

seq1  GCACAAAG-TTGTTTAAAG-TCATT--CATA-TAGT--GATAA-GAATCC  1031
      |||||||| |||||||||| |||||   ||| ||||   |||| ||||||
seq2  GCACAAAGTTTGTTTAAAGTTCATTTCAATATTAGTTGAATAAGGAATCC  1048

seq1  TCACTTTTCA-TTTTTAATTT-CATGTTT---GAGATC-TGTTTCT-ATC  1074
      |||||||||| |||||||||| |||||||   |||||| ||||||| |||
seq2  TCACTTTTCATTTTTTAATTTCCATGTTTTGGGAGATCTTGTTTCTAATC  1098

seq1  ATTCTATAATT-ATATCAAATTATTTCCATTTTAAATCCTTTCC-  1117
      ||||||||||| |||||||||||||| |||||| |||| ||| | 
seq2  ATTCTATAATTAATATCAAATTATTT-CATTTTTAATCTTTTTCC  1142