BAC Information

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BAC

Clone NameB6Ng01-281O24
Chromosome2 (Build37)
Map Location 36,272,690 - 36,423,774
singlet/doubletdoublet
Overlap geneOlfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1
Upstream geneGgta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440
Downstream geneOlfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281O24.bB6Ng01-281O24.g
ACCGA081286GA081287
length1,1451,102
definitionB6Ng01-281O24.b B6Ng01-281O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,422,647 - 36,423,774)(36,272,690 - 36,273,761)
sequence
gaattcaacatgattttaatgattgcgcatctgtttaacctttcttgaat
gcacttgcataaggctttctacaaattaaatacaagtgttgtaacccacc
cagcttctttggatcagtaaaatattaggatcttggggaagttagaaaag
taacatgtgcagatcgtcaaagccttaagcgcataagtttgtgccagcat
tacaatgtagcaataacagtgtgtacatagttatgggttcttatgtagta
acagtttctcagtcaatttggtcacactttgatcactctttctaggctgc
atcaaatgacactgattttgtgttaacatcctcaacacaaaaacctaagt
attgcattcaagtacaaagaacacatggaaataattgacttcactgctac
tacttagatcagacaaggcaattccttggatcttcctagcaaatttcacc
tgttttatttttaacctgtttttaagccaaagactatttttgtatgaatt
tcttacatgttttctctgttgctggcattctctctcttttctgtaatcat
tccctacacaagtgagaaatctctaaacaataggaaaaggaacatgataa
agttaaaatagatatcttagctgctgagagagttttataactatattcta
ttcgaagacttgtttagtggccagtttgtctctgtaattggcaacaatct
caccatttgcctcttcaaaatttccaagcgttaactacttttaatgattt
gagaaaaattttcaggtcatgagaggccaaagtgatgaagaagctgatat
gtgttctctggagagtctgttactggaagaaactaggttgaaagattgta
aaaacaagccctctaggtaaacatttggaaggacagtgctaaggagcttt
gagaaacaaggaaattcaaggtcacagaaaaatcacagaattgtaaagtt
tgggaataggattagcatcaggcagatgttaatgtctaattctcactgtg
gaggaaaagtttctcatctgttgaagaacagtaatagtccaggaaaaatg
gaagcttcaggaaatgctatagcctgcttgccttgccagtagaagtatat
tgggaagaaaggccaagatttctagctaggcattatgaaccagca
gaattctcttaccctagcctctagacatctggggttggataattaaattt
gtatgtactgatttctgagttttgctttgttgactgggtgtttttatatg
gtttctgttggattctaagtctgtgtggactttagaagaacaggtactat
gcatcccagttgtaggctgggggaaaggaaactaggaggccacagttatt
gggttgagagatcccaagagagtgagggagtgaaggatattgcccaacaa
ctagcatatcttgacttctaatctgctttgtccctagcacaataggtagt
ctctgccccagttgggtgttaggacatggcaaatagtaggaatgagatag
gccttatcgtgggtgggatgctaaaacagatagaaggggagtttggcagg
taggcagcctacctctacaaatcctctagaagagctgggagcctctgccc
caagatagtctctggtatagtagggtatctccacacatctgggttccagg
ctatggcaaccagcagagtagaaatctggagatattgtgggcagatcctg
gcaggcaggtagtctacatggatttctcccagtttaccctgtttctagta
gtggagtggggagaaacctatgcccctattgaggggctgggggaacagga
aacaagagaacaagtatctcggtgaaggtttacattgctgtgaaaagaca
acatgaccaaggcaactcttatgaagttcaacacttaattgggataattg
tttaaagtttcagaggttcagttcagtatcatcaaggcaggagaatagca
gtttccatgcaagcgtggcaaaggaagaaatgagagttctgcatcttggt
attgactgcagttgaggagataactgattttcccacattttgcagaaatt
tattagacaaccctttaaaagttatcaaattgtccttccaacaaggccaa
ggactcgttaacagtatccattttcctaatggggctccatccatattctc
aattcacttaccagcaagatactgggaagtgggggggcccttgagaatag
gtgaaaaagaagtttggaagggcaagaaagccttacctggaatcttcaat
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36422647_36423774
seq2: B6Ng01-281O24.b_47_1191 (reverse)

seq1  TGCT-GTTCAT-ATG-CTAGCTAGAATTCTTGGC--TTCT--CCAATATA  43
      |||| |||||| ||| |||||||||| |||||||  ||||  ||||||||
seq2  TGCTGGTTCATAATGCCTAGCTAGAAATCTTGGCCTTTCTTCCCAATATA  50

seq1  CTTCCTACCTGGC-AGGC-AGCCAGCTATTTGCTATTTTCTGTAACTT-C  90
      ||| ||| ||||| |||| |||  |||| | || |||| ||| | ||| |
seq2  CTT-CTA-CTGGCAAGGCAAGCAGGCTA-TAGC-ATTTCCTGAAGCTTCC  96

seq1  ATTTTTCCT-GACTATTACTGTTCTTCAACAGATG-GAAACTTTTCCTCC  138
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTTTCCTGGACTATTACTGTTCTTCAACAGATGAGAAACTTTTCCTCC  146

seq1  ACAGT--GAATTAGACATT-ACATCTGCCTGATGCTTATCTATTTCCCAA  185
      |||||  |||||||||||| |||||||||||||||| |||   |||||||
seq2  ACAGTGAGAATTAGACATTAACATCTGCCTGATGCTAATCCTATTCCCAA  196

seq1  ACTTTACAATTCTGTGA-TTTTCTGTGACCTTGAATTTTCCTTGTTTCTC  234
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  ACTTTACAATTCTGTGATTTTTCTGTGACCTTGAA-TTTCCTTGTTTCTC  245

seq1  AAAGCTCC-TAGCACTGTCCTTCCAAATGTTTACCTAGA-GGCTTGTTTT  282
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AAAGCTCCTTAGCACTGTCCTTCCAAATGTTTACCTAGAGGGCTTGTTTT  295

seq1  TACAATCTTTCAACCTAGTTTCTTCCAGT-ACAGACTCTCCAGAGAACAC  331
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACAATCTTTCAACCTAGTTTCTTCCAGTAACAGACTCTCCAGAGAACAC  345

seq1  ATATCAGCTTCTTCATCACTTTGGCCTCTCATGACCTGAAA--TTTTCTC  379
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATATCAGCTTCTTCATCACTTTGGCCTCTCATGACCTGAAAATTTTTCTC  395

seq1  AAATCATTAAAAGTAGTTAACGCTTGGAAATTTTGAAGAGGCAAATGGTG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTAAAAGTAGTTAACGCTTGGAAATTTTGAAGAGGCAAATGGTG  445

seq1  AGATTGTTGCCAATTACAGAGACAAACTGGCCACT-AACAAGTCTTCGAA  478
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGATTGTTGCCAATTACAGAGACAAACTGGCCACTAAACAAGTCTTCGAA  495

seq1  TAGAATATAGTTATAAAACTCTCTCAGCAGCTAAGATATCTATTTTAACT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATAGTTATAAAACTCTCTCAGCAGCTAAGATATCTATTTTAACT  545

seq1  TTATCATGTTCCTTTTCCTATTGTTTAGAGATTTCTCACTTGTGTAGGGA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGTTCCTTTTCCTATTGTTTAGAGATTTCTCACTTGTGTAGGGA  595

seq1  ATGATTACAGAAAAGAGAGAGAATGCCAGCAACAGAGAAAACATGTAAGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTACAGAAAAGAGAGAGAATGCCAGCAACAGAGAAAACATGTAAGA  645

seq1  AATTCATACAAAAATAGTCTTTGGCTTAAAAACAGGTTAAAAATAAAACA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATACAAAAATAGTCTTTGGCTTAAAAACAGGTTAAAAATAAAACA  695

seq1  GGTGAAATTTGCTAGGAAGATCCAAGGAATTGCCTTGTCTGATCTAAGTA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTTGCTAGGAAGATCCAAGGAATTGCCTTGTCTGATCTAAGTA  745

seq1  GTAGCAGTGAAGTCAATTATTTCCATGTGTTCTTTGTACTTGAATGCAAT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGTGAAGTCAATTATTTCCATGTGTTCTTTGTACTTGAATGCAAT  795

seq1  ACTTAGGTTTTTGTGTTGAGGATGTTAACACAAAATCAGTGTCATTTGAT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTTTTTGTGTTGAGGATGTTAACACAAAATCAGTGTCATTTGAT  845

seq1  GCAGCCTAGAAAGAGTGATCAAAGTGTGACCAAATTGACTGAGAAACTGT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTAGAAAGAGTGATCAAAGTGTGACCAAATTGACTGAGAAACTGT  895

seq1  TACTACATAAGAACCCATAACTATGTACACACTGTTATTGCTACATTGTA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATAAGAACCCATAACTATGTACACACTGTTATTGCTACATTGTA  945

seq1  ATGCTGGCACAAACTTATGCGCTTAAGGCTTTGACGATCTGCACATGTTA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGCACAAACTTATGCGCTTAAGGCTTTGACGATCTGCACATGTTA  995

seq1  CTTTTCTAACTTCCCCAAGATCCTAATATTTTACTGATCCAAAGAAGCTG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAACTTCCCCAAGATCCTAATATTTTACTGATCCAAAGAAGCTG  1045

seq1  GGTGGGTTACAACACTTGTATTTAATTTGTAGAAAGCCTTATGCAAGTGC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTACAACACTTGTATTTAATTTGTAGAAAGCCTTATGCAAGTGC  1095

seq1  ATTCAAGAAAGGTTAAACAGATGCGCAATCATTAAAATCATGTTGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAAAGGTTAAACAGATGCGCAATCATTAAAATCATGTTGAATTC  1145

seq1: chr2_36272690_36273761
seq2: B6Ng01-281O24.g_69_1170

seq1  GAATTCTCTTACCCTAGCCTCTAGACATCTGGGGTTGGATAATTAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACCCTAGCCTCTAGACATCTGGGGTTGGATAATTAAATTT  50

seq1  GTATGTACTGATTTCTGAGTTTTGCTTTGTTGACTGGGTGTTTTTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACTGATTTCTGAGTTTTGCTTTGTTGACTGGGTGTTTTTATATG  100

seq1  GTTTCTGTTGGATTCTAAGTCTGTGTGGACTTTAGAAGAACAGGTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTGGATTCTAAGTCTGTGTGGACTTTAGAAGAACAGGTACTAT  150

seq1  GCATCCCAGTTGTAGGCTGGGGGAAAGGAAACTAGGAGGCCACAGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCAGTTGTAGGCTGGGGGAAAGGAAACTAGGAGGCCACAGTTATT  200

seq1  GGGTTGAGAGATCCCAAGAGAGTGAGGGAGTGAAGGATATTGCCCAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGAGATCCCAAGAGAGTGAGGGAGTGAAGGATATTGCCCAACAA  250

seq1  CTAGCATATCTTGACTTCTAATCTGCTTTGTCCCTAGCACAATAGGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATATCTTGACTTCTAATCTGCTTTGTCCCTAGCACAATAGGTAGT  300

seq1  CTCTGCCCCAGTTGGGTGTTAGGACATGGCAAATAGTAGGAATGAGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCCAGTTGGGTGTTAGGACATGGCAAATAGTAGGAATGAGATAG  350

seq1  GCCTTATCGTGGGTGGGATGCTAAAACAGATAGAAGGGGAGTTTGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATCGTGGGTGGGATGCTAAAACAGATAGAAGGGGAGTTTGGCAGG  400

seq1  TAGGCAGCCTACCTCTACAAATCCTCTAGAAGAGCTGGGAGCCTCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGCCTACCTCTACAAATCCTCTAGAAGAGCTGGGAGCCTCTGCCC  450

seq1  CAAGATAGTCTCTGGTATAGTAGGGTATCTCCACACATCTGGGTTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGTCTCTGGTATAGTAGGGTATCTCCACACATCTGGGTTCCAGG  500

seq1  CTATGGCAACCAGCAGAGTAGAAATCTGGAGATATTGTGGGCAGATCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCAACCAGCAGAGTAGAAATCTGGAGATATTGTGGGCAGATCCTG  550

seq1  GCAGGCAGGTAGTCTACATGGATTTCTCCCAGTTTACCCTGTTTCTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGTAGTCTACATGGATTTCTCCCAGTTTACCCTGTTTCTAGTA  600

seq1  GTGGAGTGGGGAG-AACCTATGCCCCTATTGA-GGGCT-GGGGAACAGGA  647
      ||||||||||||| |||||||||||||||||| ||||| |||||||||||
seq2  GTGGAGTGGGGAGAAACCTATGCCCCTATTGAGGGGCTGGGGGAACAGGA  650

seq1  AACAAGAGAACAAGTATCTCGGTGAAGGTTTACATTGCTGTGAAAAGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGAACAAGTATCTCGGTGAAGGTTTACATTGCTGTGAAAAGACA  700

seq1  ACATGACCAAGGCAACTCTTATGAAGTTCAACACTTAATTGGGATAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATGACCAAGGCAACTCTTATGAAGTTCAACACTTAATTGGGAT-AATT  749

seq1  GTTTAAAGTTTCAGAGGTTCAGTTCAGTATCATCAAGGCAGGAGAATAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGTTTCAGAGGTTCAGTTCAGTATCATCAAGGCAGGAGAATAGC  799

seq1  AGTTTCCATGCAAGCGTGGCAAAGGAAGAAATGAGAGTTCTGCATCTTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGCAAGCGTGGCAAAGGAAGAAATGAGAGTTCTGCATCTTGG  849

seq1  TA-TGACTGCAGTTGAGGAGAAAACTGATTTT-CCACATTTTGCAGAAA-  894
      || |||||||||||||||||| |||||||||| |||||||||||||||| 
seq2  TATTGACTGCAGTTGAGGAGATAACTGATTTTCCCACATTTTGCAGAAAT  899

seq1  TTAATAGACAACCC--TCAGAG-TAACAAA-TGTCC-TCCAACAAGGCC-  938
      ||| ||||||||||  | | || || |||| ||||| |||||||||||| 
seq2  TTATTAGACAACCCTTTAAAAGTTATCAAATTGTCCTTCCAACAAGGCCA  949

seq1  AGGACTC-CTAACAGTA-CCATTT--CCAATGGG---CCCACCATATTCT  981
      |||||||  |||||||| ||||||  | ||||||   ||  |||||||||
seq2  AGGACTCGTTAACAGTATCCATTTTCCTAATGGGGCTCCATCCATATTCT  999

seq1  --AATCACT--ACAGCAAGAGACT-GGAAGTGGGGG---CCCTGAG-ATA  1022
        | |||||   |||||||| ||| |||||||||||   || |||| |||
seq2  CAATTCACTTACCAGCAAGATACTGGGAAGTGGGGGGGCCCTTGAGAATA  1049

seq1  -GTGAGAGAGAAGTTTGG-AGGGC-AGAAAGCC-TACCTGGGATTCTTCA  1068
       |||| | |||||||||| ||||| |||||||| ||||| ||| ||||||
seq2  GGTGAAAAAGAAGTTTGGAAGGGCAAGAAAGCCTTACCT-GGAATCTTCA  1098

seq1  ATTC  1072
      ||||
seq2  ATTC  1102