BAC Information

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BAC

Clone NameB6Ng01-282C10
Chromosome2 (Build37)
Map Location 38,991,409 - 38,992,565
singlet/doubletsinglet
Overlap geneA930041I02Rik
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1
Downstream geneLOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282C10.bB6Ng01-282C10.g
ACCGA081444GA081445
length1,1491,178
definitionB6Ng01-282C10.b B6Ng01-282C10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgataaaaatgagccagaaaaagtaaaataaaaaatgaagactg
gggatgtagcttagttaactcatgaaaaactagagttagcagatggctgg
ctcatcagacaaaggcactagccaccaagcatgatgatctagttccattg
ccaggacacacataggagagagactctactcccacaaattgtctgtagac
tgctacacatgccttaaatgcttttattaaaaatttaaaaactttaattg
attctttgtgaatttcatatcattcaccccaatcccactcatctccccat
ccctttacatctgccttccatccttgcaacctctccctactgaaataaaa
ccaaaaataaaataattaaaaaatgtaaagacccccaactaaccaaccaa
ccaaaaaagtcaactcactgtggaagtttcagtgtgtcacacagtatacc
cttttgcccaaacagctttacttgtaaatgttcattgcaataaatccttc
gtttggttccaggcctccggcttttgctacattatcctacattatcagta
ctggatccttaccagggctcatttcagatatcctgttgttgctctatgtc
atggagatcctgtagcttggatcagccccttcacgttccagcagttctta
aatgggttggtattggttgggatggacaacttagagccctgaatctgggc
ttgggaggaagcttaactggtcaggccactagctctcctacactgcccaa
atgagggacagggacagctctactgtgctgcccaggcaaagtgggtcctg
ctttcctgaatcctgaagtggccaaagggtggaggcagctctcccactct
caagccctaggggccagctcacaggcctgcctcagggatgagtgggttat
taatttttgaaatttaaatatgtttacatcatttatcctctcctctttcc
tccctccagtttgccctaaagagagaaagtgggggcacagcagcattttt
ctagagctcagtgtatagggtatgcaaggacagtgcttactggcagtcag
tctagtgaaacagtaaactcagactcagtgaacttgacctcaaaaagtag
gctggaaggccttgacaaataggctcatgactaagtatgtacagttctt
gaattctcccctgaggaatattgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcattaaggaaatgcaaatcaaaacagccctgagat
tccatctcacaccagtcagaatgtctaggatcaaaaattcatatgacagc
agatgctggcattgatgtggagaaagaggaacactcctccattgctggtg
ggattacaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattgaacatagtactaccggaggatcccacaatacctctcctgggc
ctatatccagatgttccaaccggtaagaaggacacatgctcccctatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatatagaacatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttattaaattcctaggcaaatg
gatgaacctggagggcatcatcctgattgaggtaacacaatcacaaaaga
actcacatattgtactcactgataagtggatattagcccagaaactttga
atatccaaaatacaagatacaaagcatatgaaaccaaagaagaataaaga
ccaaagtgtggacgctttaccccttcttagaattgggaacaaaacaccca
tggaaggagttacagagacaaagtttggagctgagacaaaaggatggacc
atctagagactaccatagccggggatccatcccataatcagctgccaaat
gcagacaccattgcatacactagcaagattttactgaaaggaccctaata
tagctgtctcttgtgagactatgccggggcctagcaaaaacagaagtcaa
tgctcacagtcagctattggatgggaacacagctccccaatagaggagct
agagaaagtatccaaggagctaaagggatctgcaaccctatagtggaaca
cattgataccagtacccctgaagctcgtgtctctagctgcatatgtatca
gaagatggcctagcctgtcatcagtgggaaagaagaggcccaatagttag
tgcaacctttataatgcctcagtagatcgccaggactagaatgcaattgg
ttggcctagaagagagaactacggcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_38991409_38992565
seq2: B6Ng01-282C10.b_49_1197

seq1  GAATTCTGATAAAAATGAGCCAGAAAAAGTAAAATAAAAAATGAAGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAAAAATGAGCCAGAAAAAGTAAAATAAAAAATGAAGACTG  50

seq1  GGGATGTAGCTTAGTTAACTCATGAAAAACTAGAGTTAGCAGATGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCTTAGTTAACTCATGAAAAACTAGAGTTAGCAGATGGCTGG  100

seq1  CTCATCAGACAAAGGCACTAGCCACCAAGCATGATGATCTAGTTCCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGACAAAGGCACTAGCCACCAAGCATGATGATCTAGTTCCATTG  150

seq1  CCAGGACACACATAGGAGAGAGACTCTACTCCCACAAATTGTCTGTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACACACATAGGAGAGAGACTCTACTCCCACAAATTGTCTGTAGAC  200

seq1  TGCTACACATGCCTTAAATGCTTTTATTAAAAATTTAAAAACTTTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACATGCCTTAAATGCTTTTATTAAAAATTTAAAAACTTTAATTG  250

seq1  ATTCTTTGTGAATTTCATATCATTCACCCCAATCCCACTCATCTCCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGTGAATTTCATATCATTCACCCCAATCCCACTCATCTCCCCAT  300

seq1  CCCTTTACATCTGCCTTCCATCCTTGCAACCTCTCCCTACTGAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACATCTGCCTTCCATCCTTGCAACCTCTCCCTACTGAAATAAAA  350

seq1  CCAAAAATAAAATAATTAAAAAATGTAAAGACCCCCAACTAACCAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAAAATAATTAAAAAATGTAAAGACCCCCAACTAACCAACCAA  400

seq1  CCAAAAAAGTCAACTCACTGTGGAAGTTTCAGTGTGTCACACAGTATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGTCAACTCACTGTGGAAGTTTCAGTGTGTCACACAGTATACC  450

seq1  CTTTTGCCCAAACAGCTTTACTTGTAAATGTTCATTGCAATAAATCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCCAAACAGCTTTACTTGTAAATGTTCATTGCAATAAATCCTTC  500

seq1  GTTTGGTTCCAGGCCTCCGGCTTTTGCTACATTATCCTACATTATCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTCCAGGCCTCCGGCTTTTGCTACATTATCCTACATTATCAGTA  550

seq1  CTGGATCCTTACCAGGGCTCATTTCAGATATCCTGTTGTTGCTCTATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCTTACCAGGGCTCATTTCAGATATCCTGTTGTTGCTCTATGTC  600

seq1  ATGGAGATCCTGTAGCTTGGATCAGCCCCTTCACGTTCCAGCAGTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATCCTGTAGCTTGGATCAGCCCCTTCACGTTCCAGCAGTTCTTA  650

seq1  AATGGGTTGGTATTGGTTGGGATGGACAACTTAGAGCCCTGAATCTGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTGGTATTGGTTGGGATGGACAACTTAGAGCCCTGAATCTGGGC  700

seq1  TTGGGAGGAAGCTTAACTGGTCAGGCCACTAGCTCTCCTACACTGCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGAAGCTTAACTGGTCAGGCCACTAGCTCTCCTACACTGCCCAA  750

seq1  ATGAGGGACAGGGACAGCTCTACTGTGCTGCCCAGGCAAAGTGGGTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACAGGGACAGCTCTACTGTGCTGCCCAGGCAAAGTGGGTCCTG  800

seq1  CTTTCCTGAATCCTGAAGTGGCCAAAGGGTGGAGGCAGCTCTCCCACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAATCCTGAAGTGGCCAAAGGGTGGAGGCAGCTCTCCCACTCT  850

seq1  CAAGCCCTAGGGGCCAGCTCACAGGCCTGCCTCAGGGATGAGTGGGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTAGGGGCCAGCTCACAGGCCTGCCTCAGGGATGAGTGGGTTAT  900

seq1  TAATTTTTGAAATTTAAATATGTTTACATCATTTATCCTCTCCTCTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGAAATTTAAATATGTTTACATCATTTATCCTCTCCTCTTTCC  950

seq1  TCCCTCCAGTTTG-CCTAAAGAGAGAAAGGTGGGGCACAGCAGCA-TTTT  998
      ||||||||||||| |||||||||||||||  |||||||||||||| ||||
seq2  TCCCTCCAGTTTGCCCTAAAGAGAGAAAGTGGGGGCACAGCAGCATTTTT  1000

seq1  CTAGAGCTCAGTGTTATAGGGTATGCAGGGACAGGGTGCTTACTGGCAGG  1048
      ||||||||||||| ||||||||||||| |||||  ||||||||||||| |
seq2  CTAGAGCTCAGTG-TATAGGGTATGCAAGGACA--GTGCTTACTGGCA-G  1046

seq1  TCAGTCTAGGTGAAACAGTAAAACTCCAGACTCAGTGAAACCTGA-CTCA  1097
      |||||||| |||||||||| ||||| ||||||||||| ||| ||| ||||
seq2  TCAGTCTA-GTGAAACAGT-AAACT-CAGACTCAGTG-AACTTGACCTCA  1092

seq1  AAAAGTAAGCTGGAAAGGGCTGGACAAATA-GCTCAGTGACTAAAAGTAT  1146
      ||||||| ||||| |||| || |||||||| ||||| |||||  ||||||
seq2  AAAAGTAGGCTGG-AAGGCCTTGACAAATAGGCTCA-TGACT--AAGTAT  1138

seq1  GTACAGTTCTT  1157
      |||||||||||
seq2  GTACAGTTCTT  1149