BAC Information

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BAC

Clone NameB6Ng01-284H12
Chromosome2 (Build37)
Map Location 172,650,817 - 172,769,738
singlet/doubletdoublet
Overlap geneBmp7
Upstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
Downstream geneLOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284H12.bB6Ng01-284H12.g
ACCGA083162GA083163
length1,088741
definitionB6Ng01-284H12.b B6Ng01-284H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,650,817 - 172,651,905)(172,769,012 - 172,769,738)
sequence
gaattccgtgcaagttccagcagctggaggccccgctgggatggatgcgc
gctactgcggccccctctgctggcagcctcaaggctgcgccttccgggga
ggtggccaagcaggaggctgcacagccaagccctcagaccgggtttacag
ccatgggatgtgagatcccagccaccatcccaccatttccacaaaagaga
aggcgtttccaacaaaaacacaggagcgcacaactgcagaaaagatcagc
ccacagcccgtgtgcaggtcttggcagtgatggacagctctgtacggcat
aactgagaggttattagacacccagagaaagtataatgaccccaccgccc
tggggttctgcacggttctgccttacagtatgcctcaagcaccacgcgag
acgtacgaacgttaaaagttggctatttatcggaatttacatttatctga
gtatttaaaatattttgcctatttctatatagcgatgctttttttctcta
gcctcagacttctagactccatcttgcttgtgttcagttacctggaactc
aagggcggcttgcttccaaggacgaaacttgattggtccccaacagtcct
gaaaatctattgctggccagggactgggttagaaagatcacgtgacatag
ttctggccaatgagacttgaggaaatctgcatcttttggcgcccgagaga
aagcggtgcgtcaagtgaaaggaacacggctttcttcctgcctgaaccgg
gctgaacatgttatatgtaaccaccttgcaaccaggacggatgcctggga
tgtgaaggaaatatgtgagaatagcagagtagaaagatgcatcccccccc
ccaccccacccttggctcctgaaccttcgagttgtggcgggtcctggagg
cactgctaactggagttagcaaggactaaagtggtgcctttctcctcctc
gcttcttccacgccaaaacacagccaggacagggaggtctcttgggcctc
ttccagagagccatccgagcttatgtgtcttgctgaggactgcgttccac
gcctaatgtcagcctggcttgttagcagatgtgtgtcc
tccgcggaattcttttctttctttctttctttctctctctctttctttct
ttctttctttctttttctttttctttttctttttctttttctttttcttt
ttctttttctttttctttttctttttctttttctttttctttttttattg
ccttggagacatcaggggctggggtcagaatcgcctctgcaggatatgaa
gtggtgtaccagatgaaaatgtcttgcccaggctgggaggctagcagcag
agagcagcttccagacacaatgacacccctccattccaggcccaggtggc
ccaggtgtggaacagcctggggggatcgcattacactgtggagcctgtgc
tgggtgccctggcggggtgggggtggggaaccagtttggggctgaggctg
atgtgggtcagggcctggctactcaggaagtccctggaccaaggctggcc
tggggtggggactgggggacaagggggagctggcaggggattgagggata
gatgaacattaatgctggctggggtcctcctttcctctcaggccatggct
gtttgatgggggctgtctttcttgctcctctgttcactgtggagcactgt
ggaaaatttgattcatctgaactgacagaagcttcttcttggtgggtttt
cctcttggtgggttttctgttaaccagatagcaactaacattttaccaag
gatgctctcttgtaccccatgtacctggaaggtccctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_172650817_172651905
seq2: B6Ng01-284H12.b_45_1132

seq1  GAATTCCGTGCAAGTTCCAGCAGCTGGAGGCCCCGCTGGGATGGATGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGCAAGTTCCAGCAGCTGGAGGCCCCGCTGGGATGGATGCGC  50

seq1  GCTACTGCGGCCCCCTCTGCTGGCAGCCTCAAGGCTGCGCCTTCCGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCGGCCCCCTCTGCTGGCAGCCTCAAGGCTGCGCCTTCCGGGGA  100

seq1  GGTGGCCAAGCAGGAGGCTGCACAGCCAAGCCCTCAGACCGGGTTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAAGCAGGAGGCTGCACAGCCAAGCCCTCAGACCGGGTTTACAG  150

seq1  CCATGGGATGTGAGATCCCAGCCACCATCCCACCATTTCCACAAAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGATGTGAGATCCCAGCCACCATCCCACCATTTCCACAAAAGAGA  200

seq1  AGGCGTTTCCAACAAAAACACAGGAGCGCACAACTGCAGAAAAGATCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTTTCCAACAAAAACACAGGAGCGCACAACTGCAGAAAAGATCAGC  250

seq1  CCACAGCCCGTGTGCAGGTCTTGGCAGTGATGGACAGCTCTGTACGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCCGTGTGCAGGTCTTGGCAGTGATGGACAGCTCTGTACGGCAT  300

seq1  AACTGAGAGGTTATTAGACACCCAGAGAAAGTATAATGACCCCACCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGGTTATTAGACACCCAGAGAAAGTATAATGACCCCACCGCCC  350

seq1  TGGGGTTCTGCACGGTTCTGCCTTACAGTATGCCTCAAGCACCACGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCTGCACGGTTCTGCCTTACAGTATGCCTCAAGCACCACGCGAG  400

seq1  ACGTACGAACGTTAAAAGTTGGCTATTTATCGGAATTTACATTTATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACGAACGTTAAAAGTTGGCTATTTATCGGAATTTACATTTATCTGA  450

seq1  GTATTTAAAATATTTTGCCTATTTCTATATAGCGATGCTTTTTTTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAATATTTTGCCTATTTCTATATAGCGATGCTTTTTTTCTCTA  500

seq1  GCCTCAGACTTCTAGACTCCATCTTGCTTGTGTTCAGTTACCTGGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGACTTCTAGACTCCATCTTGCTTGTGTTCAGTTACCTGGAACTC  550

seq1  AAGGGCGGCTTGCTTCCAAGGACGAAACTTGATTGGTCCCCAACAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGGCTTGCTTCCAAGGACGAAACTTGATTGGTCCCCAACAGTCCT  600

seq1  GAAAATCTATTGCTGGCCAGGGACTGGGTTAGAAAGATCACGTGACATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTATTGCTGGCCAGGGACTGGGTTAGAAAGATCACGTGACATAG  650

seq1  TTCTGGCCAATGAGACTTGAGGAAATCTGCATCTTTTGGCGCCCGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCAATGAGACTTGAGGAAATCTGCATCTTTTGGCGCCCGAGAGA  700

seq1  AAGCGGTGCGTCAAGTGAAAGGAACACGGCTTTCTTCCTGCCTGAACCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGTGCGTCAAGTGAAAGGAACACGGCTTTCTTCCTGCCTGAACCGG  750

seq1  GCTGAACATGTTATATGTAACCACCTTGCAACCAGGACGGATGCCTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACATGTTATATGTAACCACCTTGCAACCAGGACGGATGCCTGGGA  800

seq1  TGTGAAGGAAATATGTGAGAATAGCAGAGTAGAAAGATGCATCCCCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGAAATATGTGAGAATAGCAGAGTAGAAAGATGCATCCCCCCCC  850

seq1  CCACCCCACCCTTGGCTCCTGAACCTTCGAGTTGTGGCGGGTCCTGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCTTGGCTCCTGAACCTTCGAGTTGTGGCGGGTCCTGGAGG  900

seq1  CACTGCTAACTGGAGTTAGCAAGGACTAAAGTGGTGCC-TTCTCCTCCTC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACTGCTAACTGGAGTTAGCAAGGACTAAAGTGGTGCCTTTCTCCTCCTC  950

seq1  GCTCCTTCCACGCC-AAACACAGCCCAGGGACAGGGAGGTCTCCTTGGCC  998
      ||| |||||||||| ||||||||||   ||||||||||||||| | ||||
seq2  GCTTCTTCCACGCCAAAACACAGCC--AGGACAGGGAGGTCTCTTGGGCC  998

seq1  TCTTCCAAGAGGAGCATCCGAGCTTATGTGTCTTGCTGAGGGACTGCGTC  1048
      |||||| ||||   ||||||||||||||||||||||||| ||||||||| 
seq2  TCTTCC-AGAGAGCCATCCGAGCTTATGTGTCTTGCTGA-GGACTGCGTT  1046

seq1  CCACGCCTTAATGTCAGGCTGCCT--GTAGCAGATGTGTGTCC  1089
      ||||||| ||||||||| ||| ||   ||||||||||||||||
seq2  CCACGCC-TAATGTCAGCCTGGCTTGTTAGCAGATGTGTGTCC  1088

seq1: chr2_172769012_172769738
seq2: B6Ng01-284H12.g_66_800 (reverse)

seq1  GGAAAGGGACCTGCCAGGTGCATGGGGTAC-AGAGAACATCCTTGGT-AA  48
      |||||||||||| |||||| |||||||||| ||||| |||||||||| ||
seq2  GGAAAGGGACCTTCCAGGTACATGGGGTACAAGAGAGCATCCTTGGTAAA  50

seq1  ATGTTAGTTGCTATCTGGTTAACAGAAAACCCACCAAGAGGAAAACCCAC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTTGCTATCTGGTTAACAGAAAACCCACCAAGAGGAAAACCCAC  100

seq1  CAAGAAGAAGCTTCTGTCAGTTCAGATGAATCAAATTTTCCACAGTGCTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAGCTTCTGTCAGTTCAGATGAATCAAATTTTCCACAGTGCTC  150

seq1  CACAGTGAACAGAGGAGCAAGAAAGACAGCCCCCATCAAACAGCCATGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAACAGAGGAGCAAGAAAGACAGCCCCCATCAAACAGCCATGGC  200

seq1  CTGAGAGGAAAGGAGGACCCCAGCCAGCATTAATGTTCATCTATCCCTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAAAGGAGGACCCCAGCCAGCATTAATGTTCATCTATCCCTCA  250

seq1  ATCCCCTGCCAGCTCCCCCTTGTCCCCCAGTCCCCACCCCAGGCCAGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGCCAGCTCCCCCTTGTCCCCCAGTCCCCACCCCAGGCCAGCCT  300

seq1  TGGTCCAGGGACTTCCTGAGTAGCCAGGCCCTGACCCACATCAGCCTCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGGGACTTCCTGAGTAGCCAGGCCCTGACCCACATCAGCCTCAG  350

seq1  CCCCAAACTGGTTCCCCACCCCCACCCCGCCAGGGCACCCAGCACAGGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACTGGTTCCCCACCCCCACCCCGCCAGGGCACCCAGCACAGGCT  400

seq1  CCACAGTGTAATGCGATCCCCCCAGGCTGTTCCACACCTGGGCCACCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTAATGCGATCCCCCCAGGCTGTTCCACACCTGGGCCACCTGG  450

seq1  GCCTGGAATGGAGGGGTGTCATTGTGTCTGGAAGCTGCTCTCTGCTGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATGGAGGGGTGTCATTGTGTCTGGAAGCTGCTCTCTGCTGCTA  500

seq1  GCCTCCCAGCCTGGGCAAGACATTTTCATCTGGTACACCACTTCATATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGCCTGGGCAAGACATTTTCATCTGGTACACCACTTCATATCC  550

seq1  TGCAGAGGCGATTCTGACCCCAGCCCCTGATGTCTCCAAGGCAATAA---  595
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TGCAGAGGCGATTCTGACCCCAGCCCCTGATGTCTCCAAGGCAATAAAAA  600

seq1  ---AAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAA  642
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAA  650

seq1  GAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAGAAAGAAAGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAGAAAGAAAGAAA  700

seq1  GAGAGAGAGAAAGAAAGAAAGAAAGAAAAGAATTC  727
      |||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAAGAAAGAAAGAAAGAAAAGAATTC  735