BAC Information

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BAC

Clone NameB6Ng01-285F20
Chromosome2 (Build37)
Map Location 4,071,890 - 4,207,137
singlet/doubletdoublet
Overlap geneFrmd4a, EG634452
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik
Downstream genePrpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426, 1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F20.bB6Ng01-285F20.g
ACCGA083832GA083833
length1,122188
definitionB6Ng01-285F20.b B6Ng01-285F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,206,034 - 4,207,137)(4,071,890 - 4,072,077)
sequence
gaattcctcactgcccaccccatacccccagccctctggaatgattgctt
cacaaacaaatctgattcctccagggaacgcaaacagaagtggtttgatc
tctgcgggggtagtgggaagtgttgttttctctgttccgcccattcattt
agacctctagagctgacttcattcaaaatgccacacctctgccagtggtg
tggcattgatccatgtgggcagttctgtgtcactggacatttaggaacaa
tacccaccccaccccaccccaccccaccccaacttccccttctgtatatt
ggagtagaaacagcacaattgcaagctagaagcttctgttcatatgggga
cacaatccctatttgggattgcagggacaatccttgcatgtgggaatgga
aagcttttacttacaaacacatccatgaacaggtgctccagtgtcatctc
gaagtcatccagtctggcagctaatgtcatggtcaatgtcccaataggac
tcacggagcccaaatctgcaaacccttcagctcacagaacacctttggtg
tcaggtcggtaactaggcaaagtcgctactaatgcaaagtggaaaatctt
aaaataagacagagcattgcagaacgggctgccagggctcccgagaagaa
attctaacttaaaaaacaaaaacaaatcaaaacaactctatttaatggtt
ctatgctactgggctgggccaagaagggcagcaagtgaagaaaggtagct
tcctctgcagaactgtacaaagtaaggtgcccacaaaatgccaggcacct
cagcagaggcttgcggagacagctgaatggagcagaaacgagactggggg
aaatgcttgaaggcgtctgactctgatattttatagggccacatgttttt
gactccagccatttctcagttcatttctgacctttcataaatggctacac
acagtggagtgttttgtcgaacgaaggggcaatgggtccgcagaaacttg
gctgtgaccaaagccagagcaatttccaaccagacacgccatcattggtt
tcttttgtgatggacgcatcatgatctttgtttctggtgcacccacgacc
aggagaaacaccacagtcttgt
tttggagacaagccactttaagtctcctgagagagagctgacagtgaatg
tccgggaaggagaaatgtctcacaggcagcagcccttgaagtcaagagga
ggtcacacgagcacatcgcatacataatcactgtgccagtgtcatgggca
cagagtgaggtcacggggacgggggacggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_4206034_4207137
seq2: B6Ng01-285F20.b_48_1169 (reverse)

seq1  ACAAGACTGT-GTGTTTCTC--TGTCGT-GGTGCA-CAGAA--CAAGGTC  43
      |||||||||| |||||||||   ||||| |||||| |||||   ||| ||
seq2  ACAAGACTGTGGTGTTTCTCCTGGTCGTGGGTGCACCAGAAACAAAGATC  50

seq1  -TGATGCGTCCTTCACAAA--GAACCATTGATGGCGTGTCTG--TGTGAA  88
       |||||||||| |||||||   ||||| ||||||||||||||  ||  ||
seq2  ATGATGCGTCCATCACAAAAGAAACCAATGATGGCGTGTCTGGTTGGAAA  100

seq1  TTGCCCTGGCTTTGGTCACAGCCAAG-TTCTGCGGGACCCACTGCCCC-T  136
      |||| ||||||||||||||||||||| |||||| ||||||| |||||| |
seq2  TTGCTCTGGCTTTGGTCACAGCCAAGTTTCTGC-GGACCCATTGCCCCTT  149

seq1  CGTTCGACAATACACTCCACTGTGTGTAGCCATTTATGAAAGGTCAGAAA  186
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CGTTCGACAAAACACTCCACTGTGTGTAGCCATTTATGAAAGGTCAGAAA  199

seq1  TGAACTGAGAAATGGCTGGAGTCAAAAACATGTGGCCCTAT-AAATATCA  235
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAACTGAGAAATGGCTGGAGTCAAAAACATGTGGCCCTATAAAATATCA  249

seq1  GAGTCAGACGGCTTCAGGCATTT-CCCCAGTCTCGTTTCTGCTCCATTCA  284
      |||||||||| ||||| |||||| ||||||||||||||||||||||||||
seq2  GAGTCAGACGCCTTCAAGCATTTCCCCCAGTCTCGTTTCTGCTCCATTCA  299

seq1  GCTGTCTCCGCAAGCCTCTGCTGAGGTGCCTGGCATTTTGTGGGCACCTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCGCAAGCCTCTGCTGAGGTGCCTGGCATTTTGTGGGCACCTT  349

seq1  ACTTTGTACAGTTCTGCAGAGGAAGCTACC-TTCTTCACTTGCTGCCCTT  383
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTTGTACAGTTCTGCAGAGGAAGCTACCTTTCTTCACTTGCTGCCCTT  399

seq1  CTT-GCCCAGCCCAGTAGCATAGAACCATT-AATAGAGTTGTTTTGATTT  431
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGGCCCAGCCCAGTAGCATAGAACCATTAAATAGAGTTGTTTTGATTT  449

seq1  GTTTTTGTTTTTTAAGTTAGAATTTCTTCTCGGGAGCCCTGGCAGCCCGT  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTAAGTTAGAATTTCTTCTCGGGAGCCCTGGCAGCCCGT  499

seq1  TCTGCAATGCTCTGTCTTATTTTAAGATTTTCCACTTTGCATTAGTAGCG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATGCTCTGTCTTATTTTAAGATTTTCCACTTTGCATTAGTAGCG  549

seq1  ACTTTGCCTAGTTACCGACCTGACACCAAAGGTGTTCTGTGAGCTGAAGG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCTAGTTACCGACCTGACACCAAAGGTGTTCTGTGAGCTGAAGG  599

seq1  GTTTGCAGATTTGGGCTCCGTGAGTCCTATTGGGACATTGACCATGACAT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAGATTTGGGCTCCGTGAGTCCTATTGGGACATTGACCATGACAT  649

seq1  TAGCTGCCAGACTGGATGACTTCGAGATGACACTGGAGCACCTGTTCATG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCCAGACTGGATGACTTCGAGATGACACTGGAGCACCTGTTCATG  699

seq1  GATGTGTTTGTAAGTAAAAGCTTTCCATTCCCACATGCAAGGATTGTCCC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTTGTAAGTAAAAGCTTTCCATTCCCACATGCAAGGATTGTCCC  749

seq1  TGCAATCCCAAATAGGGATTGTGTCCCCATATGAACAGAAGCTTCTAGCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCCAAATAGGGATTGTGTCCCCATATGAACAGAAGCTTCTAGCT  799

seq1  TGCAATTGTGCTGTTTCTACTCCAATATACAGAAGGGGAAGTTGGGGTGG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGTGCTGTTTCTACTCCAATATACAGAAGGGGAAGTTGGGGTGG  849

seq1  GGTGGGGTGGGGTGGGGTGGGTATTGTTCCTAAATGTCCAGTGACACAGA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGGGTGGGGTGGGTATTGTTCCTAAATGTCCAGTGACACAGA  899

seq1  ACTGCCCACATGGATCAATGCCACACCACTGGCAGAGGTGTGGCATTTTG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCACATGGATCAATGCCACACCACTGGCAGAGGTGTGGCATTTTG  949

seq1  AATGAAGTCAGCTCTAGAGGTCTAAATGAATGGGCGGAACAGAGAAAACA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTCAGCTCTAGAGGTCTAAATGAATGGGCGGAACAGAGAAAACA  999

seq1  ACACTTCCCACTACCCCCGCAGAGATCAAACCACTTCTGTTTGCGTTCCC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCCACTACCCCCGCAGAGATCAAACCACTTCTGTTTGCGTTCCC  1049

seq1  TGGAGGAATCAGATTTGTTTGTGAAGCAATCATTCCAGAGGGCTGGGGGT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATCAGATTTGTTTGTGAAGCAATCATTCCAGAGGGCTGGGGGT  1099

seq1  ATGGGGTGGGCAGTGAGGAATTC  1104
      |||||||||||||||||||||||
seq2  ATGGGGTGGGCAGTGAGGAATTC  1122

seq1: chr2_4071890_4072077
seq2: B6Ng01-285F20.g_72_259

seq1  TTTGGAGACAAGCCACTTTAAGTCTCCTGAGAGAGAGCTGACAGTGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACAAGCCACTTTAAGTCTCCTGAGAGAGAGCTGACAGTGAATG  50

seq1  TCCGGGAAGGAGAAATGTCTCACAGGCAGCAGCCCTTGAAGTCAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAAGGAGAAATGTCTCACAGGCAGCAGCCCTTGAAGTCAAGAGGA  100

seq1  GGTCACACGAGCACATCGCATACATAATCACTGTGCCAGTGTCATGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACGAGCACATCGCATACATAATCACTGTGCCAGTGTCATGGGCA  150

seq1  CAGAGTGAGGTCACGGGGACGGGGGACGGGGGGGGGGG  188
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGGTCACGGGGACGGGGGACGGGGGGGGGGG  188