BAC Information

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BAC

Clone NameB6Ng01-285G04
Chromosome2 (Build37)
Map Location 52,115,203 - 52,228,687
singlet/doubletdoublet
Overlap geneNeb
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285G04.bB6Ng01-285G04.g
ACCGA083848GA083849
length1,1811,116
definitionB6Ng01-285G04.b B6Ng01-285G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,227,519 - 52,228,687)(52,115,203 - 52,116,278)
sequence
gaattccttctacttttcaataagcatcaccatggtcctaggaaaaatcg
gattggagactcatcagtccttcagctgatgaacagttttgagttcccac
actcttaaatagaaaattcttttttttttttttccagtagggtgcttaaa
tcagttgagctttctgttcctgaggtcctctggagagactggagacatgg
cacaggaaatgcgtctatactacatcctcacaattcccaaaagtaacacc
cctctctctgccaggtggagagtaaatttgagtgacatgtgagacttcca
gtggttacagtgagaccaagacaaagcacacatccataaacacatacact
gggtccttatctgtttacgccagaagctctcataaatagcatatgctgac
agtcatgatgattatagtcgcctcaggaaacagactcgtgactaaaacta
ggatttatagagtccaaacaactgttatttctcagacacctcataatgag
atttgttagttggtaaccaacgacctttcagtgtgaactggctcctcaga
gttcttggaattgaacaaagtgctttcccagagtccactggggtggctcc
ggacagctgtgtttgcccaaccatttgatgtcacgtctctatttagttca
tggtcatatctgagaagagaaaaacaaaacagtggcaaacttcagatgta
agtacgatatgccagtgaaaatggcttgttggtttaaccatggagattgc
cccacggtatcagtggtaggcagaaaagggaggctgggctgagacttgag
atctgtgtgtgtaaatcaaagctgttacggtcttgtgaggttggtatgta
catccttcatgctcttctggagagcctgtgcttgggctgaccataaggag
gggagccagtaaaggaacagcatagcccaagagggggaataatgtatcct
cagaaagggaaacaaaaaccatcccaaagttgatgatgtggtacagtgat
gagtctgaagttgtattttggagaacagtttcctcagtgctgggtctgcg
tctaggccattttactgctacactgttttatccaagcttatcacctctgt
gcatgggaaggaagccaattgaatgctaagaacctcaggaatttctggac
ttagagaacgaaaaacattttccaaggagac
gaattcctcttattaaaaataatagtgagtggctatcccttctatgtggc
tagtgcatcatgagtcagtatctaactcatcccatgaggccactgaaagg
aactctgtcctctggcaagatggtggtccttcatgattaaaaaaatactt
tactgaattttaaaacttctgactataatttgctcattcagattgtgatg
taactgaataattcataatatattcaaacgtatttttacccagaaatcca
ttgtctactgttgttagacttctgttcatattttagtctttgtagtatta
ccgccgcatattctttaacattaaaaccactctattagggctcagaattt
atgtttgaatgtttaaatttttatatccatacatatgaaaggttaacatt
tgccagcagagtaatctggtaaaaatgaaaatatccttccattgattgtt
tgtttacttgttcaaaactttacctagaatctacttgtgaagcacaaaac
attgtaagcaataaaaatccagtaaaaattgaatcttcccatacaagaaa
gagcaagaatgctgtaaacatttccttatgataatacacataataaggaa
atataaatatagggagatctgtgctctaatgctgcttgagatagggagtg
ccaacactggacgtacaaaatccccaccaaatagggaatcagtcactcat
tgtctgctaattaaaatgatttggaattcaaaagattttttaaacaactt
tcactgacttagaagtgattagctgagctttctgaaaaaggcacactgag
tttgtaaactcacatcacttgtatttgattaagtttgctttagccagaat
gatgttcaggagtgtcaggcatgatgtggatctgagttcttgtcccttgt
tcccaagctttctcttattaaagtcttctaaaatggagaaaacaattaat
tttatccagtgggtattggtcaggtttcaaataacaccagtttggctccc
agattggccatttattagcaaggacggcaatataaaaggagacatatatt
tttcttattcctgaaattgcaacttacccttttcaaaaatatccagattt
attggcttaccttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52227519_52228687
seq2: B6Ng01-285G04.b_46_1226 (reverse)

seq1  GTCTCCTGG---AATGTTTTTTGGTCTCTAAGTTCAGAAAATTCCTGAGG  47
      ||||||| |   ||||||||| | ||||||||| ||| ||||||||||||
seq2  GTCTCCTTGGAAAATGTTTTTCGTTCTCTAAGTCCAG-AAATTCCTGAGG  49

seq1  TTCTTAGCA-TCAA-TGGCTT-CTTCCCATTGCACAGA-GTGATAAGCTG  93
      ||||||||| |||| |||||| ||||||| |||||||| |||||||||| 
seq2  TTCTTAGCATTCAATTGGCTTCCTTCCCA-TGCACAGAGGTGATAAGCTT  98

seq1  GGAT-AAACAGTGTAGCAGTAAAATGGCCTTAGACGCAGA-CCAGCACTG  141
      |||| |||||||||||||||||||||||| |||||||||| |||||||||
seq2  GGATAAAACAGTGTAGCAGTAAAATGGCC-TAGACGCAGACCCAGCACTG  147

seq1  A-GAAACTGTTCTCC-AAATAC-ACTTCAGACTCATCACTGTACCACATC  188
      | ||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGGAAACTGTTCTCCAAAATACAACTTCAGACTCATCACTGTACCACATC  197

seq1  ATC-ACTTT-GGATGGTTTTTGTTTCCCTTTCTGAGGATACATTATT-CC  235
      ||| ||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  ATCAACTTTGGGATGGTTTTTGTTTCCCTTTCTGAGGATACATTATTCCC  247

seq1  CCTCTTGGGCTATGCTGTTCCTTTACTGGCTCCCCTCCTTATGGTCAGCC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGCTATGCTGTTCCTTTACTGGCTCCCCTCCTTATGGTCAGCC  297

seq1  CAAGCACAGGCTCTCCAGAAGAGCATGAAGGATGTACATACCAACCTCAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACAGGCTCTCCAGAAGAGCATGAAGGATGTACATACCAACCTCAC  347

seq1  AAGACCGTAACAGCTTTGATTTACACACACAGATCTCAAGTCTCAGCCCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGTAACAGCTTTGATTTACACACACAGATCTCAAGTCTCAGCCCA  397

seq1  GCCTCCCTTTTCTGCCTACCACTGATACCGTGGGGCAATCTCCATGGTTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTTTTCTGCCTACCACTGATACCGTGGGGCAATCTCCATGGTTA  447

seq1  AACCAACAAGCCATTTTCACTGGCATATCGTACTTACATCTGAAGTTTGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAAGCCATTTTCACTGGCATATCGTACTTACATCTGAAGTTTGC  497

seq1  CACTGTTTTGTTTTTCTCTTCTCAGATATGACCATGAACTAAATAGAGAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTGTTTTTCTCTTCTCAGATATGACCATGAACTAAATAGAGAC  547

seq1  GTGACATCAAATGGTTGGGCAAACACAGCTGTCCGGAGCCACCCCAGTGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAAATGGTTGGGCAAACACAGCTGTCCGGAGCCACCCCAGTGG  597

seq1  ACTCTGGGAAAGCACTTTGTTCAATTCCAAGAACTCTGAGGAGCCAGTTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGAAAGCACTTTGTTCAATTCCAAGAACTCTGAGGAGCCAGTTC  647

seq1  ACACTGAAAGGTCGTTGGTTACCAACTAACAAATCTCATTATGAGGTGTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGGTCGTTGGTTACCAACTAACAAATCTCATTATGAGGTGTC  697

seq1  TGAGAAATAACAGTTGTTTGGACTCTATAAATCCTAGTTTTAGTCACGAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATAACAGTTGTTTGGACTCTATAAATCCTAGTTTTAGTCACGAG  747

seq1  TCTGTTTCCTGAGGCGACTATAATCATCATGACTGTCAGCATATGCTATT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCTGAGGCGACTATAATCATCATGACTGTCAGCATATGCTATT  797

seq1  TATGAGAGCTTCTGGCGTAAACAGATAAGGACCCAGTGTATGTGTTTATG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGCTTCTGGCGTAAACAGATAAGGACCCAGTGTATGTGTTTATG  847

seq1  GATGTGTGCTTTGTCTTGGTCTCACTGTAACCACTGGAAGTCTCACATGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCTTTGTCTTGGTCTCACTGTAACCACTGGAAGTCTCACATGT  897

seq1  CACTCAAATTTACTCTCCACCTGGCAGAGAGAGGGGTGTTACTTTTGGGA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAATTTACTCTCCACCTGGCAGAGAGAGGGGTGTTACTTTTGGGA  947

seq1  ATTGTGAGGATGTAGTATAGACGCATTTCCTGTGCCATGTCTCCAGTCTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGGATGTAGTATAGACGCATTTCCTGTGCCATGTCTCCAGTCTC  997

seq1  TCCAGAGGACCTCAGGAACAGAAAGCTCAACTGATTTAAGCACCCTACTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGACCTCAGGAACAGAAAGCTCAACTGATTTAAGCACCCTACTG  1047

seq1  GAAAAAAAAAAAAAAGAATTTTCTATTTAAGAGTGTGGGAACTCAAAACT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAAAGAATTTTCTATTTAAGAGTGTGGGAACTCAAAACT  1097

seq1  GTTCATCAGCTGAAGGACTGATGAGTCTCCAATCCGATTTTTCCTAGGAC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAGCTGAAGGACTGATGAGTCTCCAATCCGATTTTTCCTAGGAC  1147

seq1  CATGGTGATGCTTATTGAAAAGTAGAAGGAATTC  1169
      ||||||||||||||||||||||||||||||||||
seq2  CATGGTGATGCTTATTGAAAAGTAGAAGGAATTC  1181

seq1: chr2_52115203_52116278
seq2: B6Ng01-285G04.g_67_1182

seq1  GAATTCCTCTTATTAAAAATAATAGTGAGTGGCTATCCCTTCTATGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTATTAAAAATAATAGTGAGTGGCTATCCCTTCTATGTGGC  50

seq1  TAGTGCATCATGAGTCAGTATCTAACTCATCCCATGAGGCCACTGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATCATGAGTCAGTATCTAACTCATCCCATGAGGCCACTGAAAGG  100

seq1  AACTCTGTCCTCTGGCAAGATGGTGGTCCTTCATGATTAAAAAAATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCCTCTGGCAAGATGGTGGTCCTTCATGATTAAAAAAATACTT  150

seq1  TACTGAATTTTAAAACTTCTGACTATAATTTGCTCATTCAGATTGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTTTAAAACTTCTGACTATAATTTGCTCATTCAGATTGTGATG  200

seq1  TAACTGAATAATTCATAATATATTCAAACGTATTTTTACCCAGAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAATAATTCATAATATATTCAAACGTATTTTTACCCAGAAATCCA  250

seq1  TTGTCTACTGTTGTTAGACTTCTGTTCATATTTTAGTCTTTGTAGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACTGTTGTTAGACTTCTGTTCATATTTTAGTCTTTGTAGTATTA  300

seq1  CCGCCGCATATTCTTTAACATTAAAACCACTCTATTAGGGCTCAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCATATTCTTTAACATTAAAACCACTCTATTAGGGCTCAGAATTT  350

seq1  ATGTTTGAATGTTTAAATTTTTATATCCATACATATGAAAGGTTAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAATGTTTAAATTTTTATATCCATACATATGAAAGGTTAACATT  400

seq1  TGCCAGCAGAGTAATCTGGTAAAAATGAAAATATCCTTCCATTGATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGAGTAATCTGGTAAAAATGAAAATATCCTTCCATTGATTGTT  450

seq1  TGTTTACTTGTTCAAAACTTTACCTAGAATCTACTTGTGAAGCACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTGTTCAAAACTTTACCTAGAATCTACTTGTGAAGCACAAAAC  500

seq1  ATTGTAAGCAATAAAAATCCAGTAAAAATTGAATCTTCCCATACAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCAATAAAAATCCAGTAAAAATTGAATCTTCCCATACAAGAAA  550

seq1  GAGCAAGAATGCTGTAAACATTTCCTTATGATAATACACATAATAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAATGCTGTAAACATTTCCTTATGATAATACACATAATAAGGAA  600

seq1  ATATAAATATAGGGAGATCTGTGCTCTAATGCTGCTTGAGATAGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATAGGGAGATCTGTGCTCTAATGCTGCTTGAGATAGGGAGTG  650

seq1  CCAACACTGGACGTACAAAATCCCCACCAAATAGGGAATCAGTCACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGGACGTACAAAATCCCCACCAAATAGGGAATCAGTCACTCAT  700

seq1  TGTCTGCTAATTAAAATGATTTGGAATTCAAAAGATTTTTTAAACAAC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCTGCTAATTAAAATGATTTGGAATTCAAAAGATTTTTTAAACAACTT  750

seq1  TCACTGACTTAGAAGTGATTAGCTGAGCTTTCTG-AAAAGGCACACTGAG  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCACTGACTTAGAAGTGATTAGCTGAGCTTTCTGAAAAAGGCACACTGAG  800

seq1  TTTGTAAACTCACATCACTTGTA-TTGATTAAGTTTGCTTTAGCCAGAAT  847
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTAAACTCACATCACTTGTATTTGATTAAGTTTGCTTTAGCCAGAAT  850

seq1  GATG-TCAGGAGTGTCAGGCATGATGTGGATCTGAG-TCTTGT-CCTTG-  893
      |||| ||||||||||||||||||||||||||||||| |||||| ||||| 
seq2  GATGTTCAGGAGTGTCAGGCATGATGTGGATCTGAGTTCTTGTCCCTTGT  900

seq1  TCCCAAGC-TTCTCT--ATAAAGTC-TCTAAAAT-GAG-AAACAA-TAAT  936
      |||||||| ||||||   ||||||| |||||||| ||| |||||| ||||
seq2  TCCCAAGCTTTCTCTTATTAAAGTCTTCTAAAATGGAGAAAACAATTAAT  950

seq1  TTTAT-CAGT-GGTATT-GTCAGG-TTCAAAT-ACAACAG-TTGGCT-CC  979
      ||||| |||| |||||| |||||| ||||||| ||| ||| |||||| ||
seq2  TTTATCCAGTGGGTATTGGTCAGGTTTCAAATAACACCAGTTTGGCTCCC  1000

seq1  AGAT--GGCATT--ATAGCAA-GACGGCAATATAAAAGGAGAC--ATAAT  1022
      ||||  | ||||   |||||| |||||||||||||||||||||  ||| |
seq2  AGATTGGCCATTTATTAGCAAGGACGGCAATATAAAAGGAGACATATATT  1050

seq1  TTTCTTAT--CTGAAA-TGCAAC-TACC--TTTCAA----ATACAGATT-  1061
      ||||||||  |||||| |||||| ||||  ||||||    || |||||| 
seq2  TTTCTTATTCCTGAAATTGCAACTTACCCTTTTCAAAAATATCCAGATTT  1100

seq1  -ATGGCTTACCTTTTT  1076
        ||||||||||||||
seq2  ATTGGCTTACCTTTTT  1116