BAC Information

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BAC

Clone NameB6Ng01-285J02
Chromosome2 (Build37)
Map Location 78,925,811 - 78,926,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285J02.bB6Ng01-285J02.g
ACCGA083984GA083985
length1,131372
definitionB6Ng01-285J02.b B6Ng01-285J02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagactatcatgttcaaaatgatggttagatggccagcaccagtc
tgtagcctaaggcactttccaaaaagacattgaaaataaagatagatgaa
aactcttaccacatttgaaagcctggataaacctataataaaactaagta
ctgggaggcctttagaaaacacacatgtgcatacacgcagcccatgtttt
cataaggaaatacaactgactagtgtggtgcattctttgctggggtagat
aagcatgaccatgacttagaatccagaggtatggttgtgacattctgaca
gcaaaggaacacctgctctccttctcgctcgctccacccccacattctat
aacagtcacacagggtccttcctatgcccctctcagaattccacacctgt
tcattctcttcttggtctttgacccacattaaaatcatttctttttggaa
acccatgaaaggaggaaaataaattcactttcttttttgatttctgggca
tgtcgactctaactgcatttacgacaatctttgtgttggtgcctggatta
ctatgcttgcttgttgtctgcaccatgtctacactaatgaataagatcct
gggctgtagccaggcatggtggtgcatgcctttaatcctagcactcatga
ggcagaggcaggcagatttctgagttcgaggccagcctagtctacagagt
gagcttcaggacaacctgggtgatgcagagaaaccctgtctcaaaaaaaa
aaaaaaaaaaaaaaaaaaccaacaacaacaacaaaaaaaaaactgaataa
ttattcaagctatgcatcactaggatctagtaaaatgcctaatgagtggg
tatttcctgagtctgcagaagtgaaaggatgctgtctatacagcagatat
gtgtgctttaagtttcaaggagaaaaagagactttgtcgtattctactaa
cttactgggaaggaacctaagagttaaagctagacttctttctctcaggt
ctcaggacagagctactcctccactagaggtgacctacatgagtggctca
cttaaatctgcatatgaagtaggactatctgtggagactacatttttaaa
aaccaaccatgactcaatgaagccttaactt
aagaagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgagacaggagtagtgagctctggggaagagtaggtggcactag
gttaaggggagctagatgaacagattttcaggtcttgcatgagctttggc
tctcataaatggaaagctcttggagggtgtttttccacccaaagatgcta
gatatgatttaggtttgttaggctgactgggagagtgaagctgtaagagg
agacgacacacctaccaaaatttgagagcagttaggagactggatacgtg
ctatcagtggccttgacctgggtgacagtgttcttcataagaaatccctg
ggtctggattgaaggtagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78925811_78926955
seq2: B6Ng01-285J02.b_46_1176 (reverse)

seq1  AAGTTAA-GCTTCAATGTGAAGTCATTTGTTGTGTTTTTAAAAATTGTAA  49
      ||||||| |||||| ||   ||||| | |||| ||||||||||| ||| |
seq2  AAGTTAAGGCTTCATTG---AGTCA-TGGTTG-GTTTTTAAAAA-TGT-A  43

seq1  GTCT-CACAGAATAGTCCTTACTTTCAATATGCAAGGATTT-AGTGAGCC  97
      |||| ||||| ||||||| |||||   |||||||  ||||| ||||||||
seq2  GTCTCCACAG-ATAGTCC-TACTT--CATATGCA--GATTTAAGTGAGCC  87

seq1  ACTTCATGTAGGTCA-CTCTAGTTGGAGGAGTTAGCTCTGTCCTGAGACC  146
      || |||||||||||| |||||| |||||||| ||||||||||||||||||
seq2  AC-TCATGTAGGTCACCTCTAG-TGGAGGAG-TAGCTCTGTCCTGAGACC  134

seq1  TGAGAGAAAGAAGTCTTGGCTTTAACTCTTAGGTTCCTTCCCAGTAAGTT  196
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  TGAGAGAAAGAAGTC-TAGCTTTAACTCTTAGGTTCCTTCCCAGTAAGTT  183

seq1  AGTAGAATACGACAAAGTCTCTTTTTCTCC-TGAAACTTAAAGCACACAT  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTAGAATACGACAAAGTCTCTTTTTCTCCTTGAAACTTAAAGCACACAT  233

seq1  ATCTGCTGTATAGACAGCATCCTTTCACTTCTGCAGACTCAGGAAATACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTATAGACAGCATCCTTTCACTTCTGCAGACTCAGGAAATACC  283

seq1  CACTCATTAGGCATTTTACTAGATCCTAGTGATGCATAGCTTGAATAATT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTAGGCATTTTACTAGATCCTAGTGATGCATAGCTTGAATAATT  333

seq1  ATTCAGTTTTTTTTTTGTTGTTGTTGTTGGTTTTTTTTTTTTTTTTTTTT  395
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATTCAGTTTTTTTTTTGTTGTTGTTGTTGG--TTTTTTTTTTTTTTTTTT  381

seq1  TTTTTTTTGAGACAGGGTTTCTCTGCATCACCCAGGTTGTCCTGAAGCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAGACAGGGTTTCTCTGCATCACCCAGGTTGTCCTGAAGCTC  431

seq1  ACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACTAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCC  481

seq1  TCATGAGTGCTAGGATTAAAGGCATGCACCACCATGCCTGGCTACAGCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGTGCTAGGATTAAAGGCATGCACCACCATGCCTGGCTACAGCCC  531

seq1  AGGATCTTATTCATTAGTGTAGACATGGTGCAGACAACAAGCAAGCATAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTATTCATTAGTGTAGACATGGTGCAGACAACAAGCAAGCATAG  581

seq1  TAATCCAGGCACCAACACAAAGATTGTCGTAAATGCAGTTAGAGTCGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGGCACCAACACAAAGATTGTCGTAAATGCAGTTAGAGTCGACA  631

seq1  TGCCCAGAAATCAAAAAAGAAAGTGAATTTATTTTCCTCCTTTCATGGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAAATCAAAAAAGAAAGTGAATTTATTTTCCTCCTTTCATGGGT  681

seq1  TTCCAAAAAGAAATGATTTTAATGTGGGTCAAAGACCAAGAAGAGAATGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAGAAATGATTTTAATGTGGGTCAAAGACCAAGAAGAGAATGA  731

seq1  ACAGGTGTGGAATTCTGAGAGGGGCATAGGAAGGACCCTGTGTGACTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTGGAATTCTGAGAGGGGCATAGGAAGGACCCTGTGTGACTGTT  781

seq1  ATAGAATGTGGGGGTGGAGCGAGCGAGAAGGAGAGCAGGTGTTCCTTTGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTGGGGGTGGAGCGAGCGAGAAGGAGAGCAGGTGTTCCTTTGC  831

seq1  TGTCAGAATGTCACAACCATACCTCTGGATTCTAAGTCATGGTCATGCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAATGTCACAACCATACCTCTGGATTCTAAGTCATGGTCATGCTT  881

seq1  ATCTACCCCAGCAAAGAATGCACCACACTAGTCAGTTGTATTTCCTTATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCCAGCAAAGAATGCACCACACTAGTCAGTTGTATTTCCTTATG  931

seq1  AAAACATGGGCTGCGTGTATGCACATGTGTGTTTTCTAAAGGCCTCCCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGGCTGCGTGTATGCACATGTGTGTTTTCTAAAGGCCTCCCAG  981

seq1  TACTTAGTTTTATTATAGGTTTATCCAGGCTTTCAAATGTGGTAAGAGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTTTATTATAGGTTTATCCAGGCTTTCAAATGTGGTAAGAGTT  1031

seq1  TTCATCTATCTTTATTTTCAATGTCTTTTTGGAAAGTGCCTTAGGCTACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTATCTTTATTTTCAATGTCTTTTTGGAAAGTGCCTTAGGCTACA  1081

seq1  GACTGGTGCTGGCCATCTAACCATCATTTTGAACATGATAGTCTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGCTGGCCATCTAACCATCATTTTGAACATGATAGTCTGAATTC  1131