BAC Information

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BAC

Clone NameB6Ng01-285J05
Chromosome2 (Build37)
Map Location 59,759,995 - 59,919,736
singlet/doubletdoublet
Overlap geneBaz2b
Upstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285J05.bB6Ng01-285J05.g
ACCGA083990GA083991
length1,0771,144
definitionB6Ng01-285J05.b B6Ng01-285J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,759,995 - 59,761,060)(59,918,576 - 59,919,736)
sequence
gaattcaataaatctaattcccttttttttttttttggtcggctatagac
tctgaacaaaagttttattagttgtagattccatcgttagtttactattc
cagattaagtactatctttccggtcaaaagagtttaaattccatctttcc
agcccaccagcctccaggagtctcacactaccagcatgacagcacattaa
cttacttgcggagtttaccttccaccatccatttatctcttctcaagtta
gacatgtattcaatgttcttgtcaatctcactgccaatacaaaaatgtat
gaagagatatatcagtttatgcaaggtaccttcttagtaggcataatcac
ctattttagtaggtaaaatgatacaacaccattccactgctacacggctt
tatgcacatatgggcatttactttaagaagcagccatttttttcattgga
tacaatattgctattaggaaatttactttggtttcaaaaatacagcgctg
taataccatttcacaattgttcataaaaacagcattctgatgtggttggt
atatatcgaaggagtgatcatttccaagttcatcttggaaatgaggatgt
acacggatatttatttaagtgtatactggttcacagggaatatcacttta
cacatgcccaaatggaaactaaaagtgtggtgttaggtggtggtgacaga
ctagtgctgcctctattcttctgaaacagcaaatgctagtgctctctgta
tgctgagtttacatgtgtgtacaaacgtctgaagagccactcagcattag
tactattatcatgcttatgcaaagtccaagaattccctcagtcaaagctg
tattaattacattctttggaaatactcccaaagaatacaagaagtaagta
acaatcatgttaatatatcatagctaagatattggacagaagcatatgcc
caccaacacccacaaataaattggcacgggaatactttcgaacgctgttt
ttaaagggtaaaagacttaaaagtaatgtaattttcaatttttttaaaca
atgatgacccaagcacaggaatgaacg
gaattcagtgccttgtctttattaagcatatattgagatctgcctacatt
ccttcggtgaaatcaaatgatgtatttaagagtattattttaacttggta
ttaatatccagaaatgcataattgtggggctatggtcaagctcaatcaat
aaagctatcaccttgagtacacaagaccctgggttctaccctgaatacca
taaagaaaaaagtgcacagttgtaccatttgaaatagtaaaaaataatta
aatatttaaagtttgcataaagcctctttgcgtagaactgaacaaactac
atcaccaatagtttccctagtattggatttctactttaaaaaatgtttat
ttatatttatgtatatatgtatgttccttcttacctgtctgtgagccaca
ttcgtgtggtaccctaagaggtctttattaagtaggtctcaaatccttgg
acaaacggctgaggagactattgaacatatcaaaacggactttgccagca
gcttctcccaacatcccgacctgttatagattatagatggtatttcaccc
caccccctccccagaggcccttccctaaacaatgccagccattttgatga
cccccgttgaccttttgcttgcttggctgctgcacctggttcccccctcc
ttcacctccccctggcctcttctcatgtggatcagggtcatgtctagact
ggactcttctggctgtctctgcctttggctgtgctttcctttccatctac
aataattgcccacaatccctccagtatatgcctataataaatgcccagga
tactgggtctcaggtcagagcttaggtgtgaagccctgggatctattctt
agcaaaaataaaacgggaaaaaggaagcttatcattgtttttaaatttgg
gcttatgtccacaatttcaagtttgcaatgcttgaaacacattatacaca
tgtaatttttgaattattttttctatatacactggaaattattatatgag
tctggattcaacccaaaccctaacacatgtcagcgaaccttctacacaga
gtatagcttcagacatgcttctcttattatgtagctactcttaaaaatgt
caacccagatcaaaactatttttaacatttgataagtctataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59759995_59761060
seq2: B6Ng01-285J05.b_44_1120

seq1  GAATTCAATAAATCTAATTCCCTTTTTTTTTTTTTTGGTCGGCTATAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATCTAATTCCCTTTTTTTTTTTTTTGGTCGGCTATAGAC  50

seq1  TCTGAACAAAAGTTTTATTAGTTGTAGATTCCATCGTTAGTTTACTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAAAAGTTTTATTAGTTGTAGATTCCATCGTTAGTTTACTATTC  100

seq1  CAGATTAAGTACTATCTTTCCGGTCAAAAGAGTTTAAATTCCATCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAGTACTATCTTTCCGGTCAAAAGAGTTTAAATTCCATCTTTCC  150

seq1  AGCCCACCAGCCTCCAGGAGTCTCACACTACCAGCATGACAGCACATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCAGCCTCCAGGAGTCTCACACTACCAGCATGACAGCACATTAA  200

seq1  CTTACTTGCGGAGTTTACCTTCCACCATCCATTTATCTCTTCTCAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGCGGAGTTTACCTTCCACCATCCATTTATCTCTTCTCAAGTTA  250

seq1  GACATGTATTCAATGTTCTTGTCAATCTCACTGCCAATACAAAAATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTATTCAATGTTCTTGTCAATCTCACTGCCAATACAAAAATGTAT  300

seq1  GAAGAGATATATCAGTTTATGCAAGGTACCTTCTTAGTAGGCATAATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATATATCAGTTTATGCAAGGTACCTTCTTAGTAGGCATAATCAC  350

seq1  CTATTTTAGTAGGTAAAATGATACAACACCATTCCACTGCTACACGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGTAGGTAAAATGATACAACACCATTCCACTGCTACACGGCTT  400

seq1  TATGCACATATGGGCATTTACTTTAAGAAGCAGCCATTTTTTTCATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATATGGGCATTTACTTTAAGAAGCAGCCATTTTTTTCATTGGA  450

seq1  TACAATATTGCTATTAGGAAATTTACTTTGGTTTCAAAAATACAGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTGCTATTAGGAAATTTACTTTGGTTTCAAAAATACAGCGCTG  500

seq1  TAATACCATTTCACAATTGTTCATAAAAACAGCATTCTGATGTGGTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCATTTCACAATTGTTCATAAAAACAGCATTCTGATGTGGTTGGT  550

seq1  ATATATCGAAGGAGTGATCATTTCCAAGTTCATCTTGGAAATGAGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCGAAGGAGTGATCATTTCCAAGTTCATCTTGGAAATGAGGATGT  600

seq1  ACACGGATATTTATTTAAGTGTATACTGGTTCACAGGGAATATCACTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGATATTTATTTAAGTGTATACTGGTTCACAGGGAATATCACTTTA  650

seq1  CACATGCCCAAATGGAAACTAAAAGTGTGGTGTTAGGTGGTGGTGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCCAAATGGAAACTAAAAGTGTGGTGTTAGGTGGTGGTGACAGA  700

seq1  CTAGTGCTGCCTCTATTCTTCTGAAACAGCAAATGCTAGTGCTCTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTGCCTCTATTCTTCTGAAACAGCAAATGCTAGTGCTCTCTGTA  750

seq1  TGCTGAGTTTACATGTGTGTACAAACGTCTGAAGAGCCACTCAGCATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTTACATGTGTGTACAAACGTCTGAAGAGCCACTCAGCATTAG  800

seq1  TACTATTATCATGCTTATGCAAAGTCCAAGAATTCCCTCAGTCAAAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATCATGCTTATGCAAAGTCCAAGAATTCCCTCAGTCAAAGCTG  850

seq1  TATT-ATTACATTC-TTGGAAATACTCCCAAAGAATACAAGAAGTAAGTA  898
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATTAATTACATTCTTTGGAAATACTCCCAAAGAATACAAGAAGTAAGTA  900

seq1  ACAATCATGTTAATATATCATAGCTAAGATA-TGGACAGAAGCCATATGC  947
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  ACAATCATGTTAATATATCATAGCTAAGATATTGGACAGAAG-CATATGC  949

seq1  CCACCAACA-CCACAAATAAA-TGGCAC-GGAATACTTTCGAACGCTGTT  994
      ||||||||| ||||||||||| |||||| |||||||||||||||||||||
seq2  CCACCAACACCCACAAATAAATTGGCACGGGAATACTTTCGAACGCTGTT  999

seq1  TTTAAA-GGTAAAAGAC-TAAAAGTAATGTA--TTTCAATTTTTTAAACA  1040
      |||||| |||||||||| |||||||||||||  |||||||||||| ||  
seq2  TTTAAAGGGTAAAAGACTTAAAAGTAATGTAATTTTCAATTTTTTTAAAC  1049

seq1  AATGAAGA-CCAAGCACAGG-ATGAACG  1066
      ||||| || ||||||||||| |||||||
seq2  AATGATGACCCAAGCACAGGAATGAACG  1077

seq1: chr2_59918576_59919736
seq2: B6Ng01-285J05.g_65_1208 (reverse)

seq1  GTTATAGAC-TATTAAATAGTTAAACAAAATAGTTTTTGTATCTTGTGTT  49
      ||||||||| ||| |||| ||||   |||||||||||   ||| || |||
seq2  GTTATAGACTTATCAAAT-GTTA---AAAATAGTTTT--GATC-TGGGTT  43

seq1  GTACACTTTTTTAAAGAGGTAGCTACATAATAAAGAGAACCATGTCTGAA  99
      | |||   |||| |||| ||||||||||||| ||||||| ||||||||||
seq2  G-ACA---TTTTTAAGA-GTAGCTACATAAT-AAGAGAAGCATGTCTGAA  87

seq1  GCTATACCTCTGTGGTAGGATGTTCGCCTGACATGTGTAAGGTTTGGGTT  149
      |||||| |||||| |||| | ||||| ||||||||||| ||| || || |
seq2  GCTATA-CTCTGT-GTAGAAGGTTCG-CTGACATGTGTTAGGGTTTGGGT  134

seq1  TGAATCCCAGAACTCATATAATTATTTCCAAGGTGTATATAAGAAAAATA  199
      ||||| |||| ||||||||||| |||||||  |||||||||  |||||||
seq2  TGAAT-CCAG-ACTCATATAATAATTTCCA--GTGTATATAGAAAAAATA  180

seq1  ATTTCAAAAATTACATGTGTATAATGTGTTTCAAGCATTGCAAACTTG-A  248
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  A-TTCAAAAATTACATGTGTATAATGTGTTTCAAGCATTGCAAACTTGAA  229

seq1  ATTGTGGACATAAG-CCAAATTT-AAAACAATGATAAGCTTCCTTTTTCC  296
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  ATTGTGGACATAAGCCCAAATTTAAAAACAATGATAAGCTTCCTTTTTCC  279

seq1  CCTTTTATTTTTGCTAAGAATAGATCCCAGGGCTTCACACCTAAGCTCTG  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTATTTTTGCTAAGAATAGATCCCAGGGCTTCACACCTAAGCTCTG  329

seq1  ACCTGAGACCCAGTATCCTGGGCATTTATTATAGGCATATACTGGAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGACCCAGTATCCTGGGCATTTATTATAGGCATATACTGGAGGGA  379

seq1  TTGTGGGCAATTATTGTAGATGGAAAGGAAAGCACAGCCAAAGGCAGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCAATTATTGTAGATGGAAAGGAAAGCACAGCCAAAGGCAGAGA  429

seq1  CAGCCAGAAGAGTCCAGTCTAGACATGACCCTGATCCACATGAGAAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAAGAGTCCAGTCTAGACATGACCCTGATCCACATGAGAAGAGG  479

seq1  CCAGGGGGAGGGGAAGGAGGGGGGAACCAGGTGCAGCAGCCAAGCAAGCA  546
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGAGGTGAAGGAGGGGGGAACCAGGTGCAGCAGCCAAGCAAGCA  529

seq1  AAAGGTCAACGGGGGTCATCAAAATGGCTGGCATTGTTTAGGGAAGGGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAACGGGGGTCATCAAAATGGCTGGCATTGTTTAGGGAAGGGCC  579

seq1  TCTGGGGAGGGGGTGGGGTGAAATACCATCTATAATCTATAACAGGTCGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAGGGGGTGGGGTGAAATACCATCTATAATCTATAACAGGTCGG  629

seq1  GATGTTGGGAGAAGCTGCTGGCAAAGTCCGTTTTGATATGTTCAATAGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGGAGAAGCTGCTGGCAAAGTCCGTTTTGATATGTTCAATAGTC  679

seq1  TCCTCAGCCGTTTGTCCAAGGATTTGAGACCTACTTAATAAAGACCTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCGTTTGTCCAAGGATTTGAGACCTACTTAATAAAGACCTCTT  729

seq1  AGGGTACCACACGAATGTGGCTCACAGACAGGTAAGAAGGAACATACATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACCACACGAATGTGGCTCACAGACAGGTAAGAAGGAACATACATA  779

seq1  TATACATAAATATAAATAAACATTTTTTAAAGTAGAAATCCAATACTAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAATATAAATAAACATTTTTTAAAGTAGAAATCCAATACTAGG  829

seq1  GAAACTATTGGTGATGTAGTTTGTTCAGTTCTACGCAAAGAGGCTTTATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTGGTGATGTAGTTTGTTCAGTTCTACGCAAAGAGGCTTTATG  879

seq1  CAAACTTTAAATATTTAATTATTTTTTACTATTTCAAATGGTACAACTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTAAATATTTAATTATTTTTTACTATTTCAAATGGTACAACTGT  929

seq1  GCACTTTTTTCTTTATGGTATTCAGGGTAGAACCCAGGGTCTTGTGTACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTTTCTTTATGGTATTCAGGGTAGAACCCAGGGTCTTGTGTACT  979

seq1  CAAGGTGATAGCTTTATTGATTGAGCTTGACCATAGCCCCACAATTATGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGATAGCTTTATTGATTGAGCTTGACCATAGCCCCACAATTATGC  1029

seq1  ATTTCTGGATATTAATACCAAGTTAAAATAATACTCTTAAATACATCATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGATATTAATACCAAGTTAAAATAATACTCTTAAATACATCATT  1079

seq1  TGATTTCACCGAAGGAATGTAGGCAGATCTCAATATATGCTTAATAAAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCACCGAAGGAATGTAGGCAGATCTCAATATATGCTTAATAAAGA  1129

seq1  CAAGGCACTGAATTC  1161
      |||||||||||||||
seq2  CAAGGCACTGAATTC  1144