BAC Information

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BAC

Clone NameB6Ng01-285M03
Chromosome2 (Build37)
Map Location 40,661,946 - 40,758,187
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285M03.bB6Ng01-285M03.g
ACCGA084125GA084126
length1,0831,055
definitionB6Ng01-285M03.b B6Ng01-285M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,757,108 - 40,758,187)(40,661,946 - 40,662,986)
sequence
gaattcactctgtgttagacatctgctgttttatattaggctgctgcaga
tcatacaacttagaacatggtacgttgggggcaggttatatttttattgg
atcaagttcagacagatagattgatatctatttctttatcatttctgtca
gcaaaactctgtatagaaccatttagctttttagagaactatttctataa
taataataataataataataataataataataataataataattactgcc
tcctgttgaatacaatgaaactaaataaaataatttaacatgtacacaca
cacacacacacacacacacacacacaatggtaatggacccatgcttaata
gacaccaattaatatggccccaaacaattctttgctcacttcatatgact
aaatctcacttgagttaaagttttgttcatatttactttttttctgaaaa
ttctttgaaaatggtatttgcacaaaattccttataaacacattatcttt
taaaagaaatttctctttatatgaagtcataataaatcactttgtaaaat
cccagtttttatatcaaagggtgtataacactctattatgttgagtttac
ttaaggtcttttttttctttcatttttgcatctccctctatccccccccc
ccccacatctttcaccctccattttccatccaaatttaatgccctctggc
tctttaagtattttacataaatgagagtaaaacaaacacatgtatgtaca
aataattacaactaactgtatctatttagtgcagttcctatttatagata
tttagggaggaccacttggtactgggcagtcaactaggtagagcatcatg
gagaatactgacagactgacacttcctctttcatcatccattatctgtag
ctctccatctaagagtaggtttatttttatttttattttttaattcagaa
ctttttaaacacatatattcacaaaaatttttatcatgtgactcctcact
cctcctcagattcaatcttactgctctaacccactttaaacattgtgctc
tctctttggctcttagctgtctttcgaaaaaac
gaattcctgatcactgtgttcatataaaaggcactttctcaattagttat
caaggggagagggccccttgtgggtgatgacatcccttggctggtattct
tgggttctataaaaaagcaagcagaggaaggcaggggaagcaagccagtg
agaagcattcctccatggcctctgtctgcatcagctcctgcttcctgacc
ttgagtaccagtcctgacttcttttagtggcaaacaaaaatgtggaaatg
tatgctgaataaacccttttctctccaacttgcttcttggtcatgatgtt
tgtgtaggaatagaaaccctgactaagacaataaagttttaaaacaacaa
aaaatccaaactcatgaaaacaatgagtaaaattggagcttttaggggct
ggggagaagactggagagagaataaaaacaggacacaaaagattcaacta
gacaagattaatatattccagagattgattacacaccataacagctatgt
ttaataacaacatattttatacttgatgattgctaagacagatgcttcat
gttctcaagacaaaatattgagcacataagataatatacatgccaaatgg
cttgaataaaccatttaacatatatatatatacacatatatatacatata
tatatgaacatatatatgtacatatatatgtgaacatatatatatatcat
cactatatatatgtatataatatatgcatatagtatatatatatatattt
actgttttaaaacacaaaatgtaaatacttatgtttttactaggtactta
tgttttactaggatcaggaccacacatcagcttttccaatagctgcgcat
cttctctgaatttttcaaaacaaaccatatatatttgaccatatatatga
taatagttaacccctgggaggacctcttaccaactctgtaactatgtagc
ttacctttcaacacaatgggttgtgtgatatttcaaagttataatagaaa
ttcagaaagttgcaaaatactgaaagagaaaaaattcatccgtgaagcct
gactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40757108_40758187
seq2: B6Ng01-285M03.b_48_1130 (reverse)

seq1  GTTTTTTCTGAAAGACAGCT-AGAGC--AAAAGAGAGCACAATGTT--AA  45
      |||||||| ||||||||||| |||||  || |||||||||||||||  ||
seq2  GTTTTTTC-GAAAGACAGCTAAGAGCCAAAGAGAGAGCACAATGTTTAAA  49

seq1  GTGGG-TAGAGCAGTAAGA-TGAATCTGA-GAGGAGTTGAGGAGTCACAT  92
      ||||| ||||||||||||| ||||||||| |||||| |||||||||||||
seq2  GTGGGTTAGAGCAGTAAGATTGAATCTGAGGAGGAG-TGAGGAGTCACAT  98

seq1  GATAAAAATTTTTTGTGAATATATTGTGTTTAAAAAGTTCCTGAATTAAA  142
      |||||||| |||||||||||||| ||||||||||||||| ||||||||||
seq2  GATAAAAA-TTTTTGTGAATATA-TGTGTTTAAAAAGTT-CTGAATTAAA  145

seq1  AAATAAAAATAAAAATAAACCTACTCTTAGATGGAGAGCTACAGATAATG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAAATAAACCTACTCTTAGATGGAGAGCTACAGATAATG  195

seq1  GATGATGAAAGAGGAAGTGTCAGTCTGTCAGTATTCTCCATGATGCTCTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGAAAGAGGAAGTGTCAGTCTGTCAGTATTCTCCATGATGCTCTA  245

seq1  CCTAGTTGACTGCCCAGTACCAAGTGGTCCTCCCTAAATATCTATAAATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGACTGCCCAGTACCAAGTGGTCCTCCCTAAATATCTATAAATA  295

seq1  GGAACTGCACTAAATAGATACAGTTAGTTGTAATTATTTGTACATACATG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCACTAAATAGATACAGTTAGTTGTAATTATTTGTACATACATG  345

seq1  TGTTTGTTTTACTCTCATTTATGTAAAATACTTAAAGAGCCAGAGGGCAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTACTCTCATTTATGTAAAATACTTAAAGAGCCAGAGGGCAT  395

seq1  TAAATTTGGATGGAAAATGGAGGGTGAAAGATGTGGGGGGGGGGGGGATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGGATGGAAAATGGAGGGTGAAAGATGTGGGGGGGGGGGGGATA  445

seq1  GAGGGAGATGCAAAAATGAAAGAAAAAAAAGACCTTAAGTAAACTCAACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGATGCAAAAATGAAAGAAAAAAAAGACCTTAAGTAAACTCAACA  495

seq1  TAATAGAGTGTTATACACCCTTTGATATAAAAACTGGGATTTTACAAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTGTTATACACCCTTTGATATAAAAACTGGGATTTTACAAAGT  545

seq1  GATTTATTATGACTTCATATAAAGAGAAATTTCTTTTAAAAGATAATGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTATGACTTCATATAAAGAGAAATTTCTTTTAAAAGATAATGTG  595

seq1  TTTATAAGGAATTTTGTGCAAATACCATTTTCAAAGAATTTTCAGAAAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGGAATTTTGTGCAAATACCATTTTCAAAGAATTTTCAGAAAAA  645

seq1  AAGTAAATATGAACAAAACTTTAACTCAAGTGAGATTTAGTCATATGAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATATGAACAAAACTTTAACTCAAGTGAGATTTAGTCATATGAAG  695

seq1  TGAGCAAAGAATTGTTTGGGGCCATATTAATTGGTGTCTATTAAGCATGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAGAATTGTTTGGGGCCATATTAATTGGTGTCTATTAAGCATGG  745

seq1  GTCCATTACCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTACCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATG  795

seq1  TTAAATTATTTTATTTAGTTTCATTGTATTCAACAGGAGGCAGTAATTAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTTTATTTAGTTTCATTGTATTCAACAGGAGGCAGTAATTAT  845

seq1  TATTATTATTATTATTATTATTATTATTATTATTATTATTATAGAAATAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTATTATTATTATTATTATTATAGAAATAG  895

seq1  TTCTCTAAAAAGCTAAATGGTTCTATACAGAGTTTTGCTGACAGAAATGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAAAAGCTAAATGGTTCTATACAGAGTTTTGCTGACAGAAATGA  945

seq1  TAAAGAAATAGATATCAATCTATCTGTCTGAACTTGATCCAATAAAAATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATAGATATCAATCTATCTGTCTGAACTTGATCCAATAAAAATA  995

seq1  TAACCTGCCCCCAACGTACCATGTTCTAAGTTGTATGATCTGCAGCAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGCCCCCAACGTACCATGTTCTAAGTTGTATGATCTGCAGCAGCC  1045

seq1  TAATATAAAACAGCAGATGTCTAACACAGAGTGAATTC  1080
      ||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAACAGCAGATGTCTAACACAGAGTGAATTC  1083

seq1: chr2_40661946_40662986
seq2: B6Ng01-285M03.g_69_1123

seq1  GAATTCCTGATCACTGTGTTCATATAAAAGGCACTTTCTCAATTAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCACTGTGTTCATATAAAAGGCACTTTCTCAATTAGTTAT  50

seq1  CAAGGGGAGAGGGCCCCTTGTGGGTGATGACATCCCTTGGCTGGTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGAGAGGGCCCCTTGTGGGTGATGACATCCCTTGGCTGGTATTCT  100

seq1  TGGGTTCTATAAAAAAGCAAGCAGAGGAAGGCAGGGGAAGCAAGCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTATAAAAAAGCAAGCAGAGGAAGGCAGGGGAAGCAAGCCAGTG  150

seq1  AGAAGCATTCCTCCATGGCCTCTGTCTGCATCAGCTCCTGCTTCCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTCCTCCATGGCCTCTGTCTGCATCAGCTCCTGCTTCCTGACC  200

seq1  TTGAGTACCAGTCCTGACTTCTTTTAGTGGCAAACAAAAATGTGGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACCAGTCCTGACTTCTTTTAGTGGCAAACAAAAATGTGGAAATG  250

seq1  TATGCTGAATAAACCCTTTTCTCTCCAACTTGCTTCTTGGTCATGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAATAAACCCTTTTCTCTCCAACTTGCTTCTTGGTCATGATGTT  300

seq1  TGTGTAGGAATAGAAACCCTGACTAAGACAATAAAGTTTTAAAACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGAATAGAAACCCTGACTAAGACAATAAAGTTTTAAAACAACAA  350

seq1  AAAATCCAAACTCATGAAAACAATGAGTAAAATTGGAGCTTTTAGGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAACTCATGAAAACAATGAGTAAAATTGGAGCTTTTAGGGGCT  400

seq1  GGGGAGAAGACTGGAGAGAGAATAAAAACAGGACACAAAAGATTCAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGACTGGAGAGAGAATAAAAACAGGACACAAAAGATTCAACTA  450

seq1  GACAAGATTAATATATTCCAGAGATTGATTACACACCATAACAGCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATTAATATATTCCAGAGATTGATTACACACCATAACAGCTATGT  500

seq1  TTAATAACAACATATTTTATACTTGATGATTGCTAAGACAGATGCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACAACATATTTTATACTTGATGATTGCTAAGACAGATGCTTCAT  550

seq1  GTTCTCAAGACAAAATATTGAGCACATAAGATAATATACATGCCAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAGACAAAATATTGAGCACATAAGATAATATACATGCCAAATGG  600

seq1  CTTGAATAAACCATTTAACATATATATATATACACATATATATACATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAAACCATTTAACATATATATATATACACATATATATACATATA  650

seq1  TATATGAACATATATATGTACATATATATGTGAACATATATATATATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAACATATATATGTACATATATATGTGAACATATATATATATCAT  700

seq1  CACTATATATATGTATATAATATATGCATATAGTATATATATATATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATATATGTATATAATATATGCATATAGTATATATATATATATTT  750

seq1  ACTG-TTTAAAACACAAAATGTAAATACTTATG-TTTTACTAGGTACTTA  798
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTGTTTTAAAACACAAAATGTAAATACTTATGTTTTTACTAGGTACTTA  800

seq1  TGTTTTACTAGGATCAGGACCACACATCAGC-TTTCCAATAGCTGCGCAT  847
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTTACTAGGATCAGGACCACACATCAGCTTTTCCAATAGCTGCGCAT  850

seq1  CTTCTCTGAATTTTTC-AAACAAA-CATATATATTTGACCATATATATGA  895
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  CTTCTCTGAATTTTTCAAAACAAACCATATATATTTGACCATATATATGA  900

seq1  TAATAGTTTACCCCTGGGAGGACCTCTTACCAACTCTGTAACTATGTAGC  945
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTAACCCCTGGGAGGACCTCTTACCAACTCTGTAACTATGTAGC  950

seq1  TAACTTTTCACACCAATGGGTTGTGTGATATTTCAAAGTTATAATAG-AA  994
      | || |||||   |||||||||||||||||||||||||||||||||| ||
seq2  TTACCTTTCAACACAATGGGTTGTGTGATATTTCAAAGTTATAATAGAAA  1000

seq1  TTCAG-AAGGTGC-AAATACTG-AAGAGAAAA---TCAT-CGTG-AGCCT  1036
      ||||| ||| ||| |||||||| |||||||||   |||| |||| |||||
seq2  TTCAGAAAGTTGCAAAATACTGAAAGAGAAAAAATTCATCCGTGAAGCCT  1050

seq1  GACTG  1041
      |||||
seq2  GACTG  1055