BAC Information

Click to search

BAC

Clone NameB6Ng01-285P03
Chromosome2 (Build37)
Map Location 140,587,989 - 140,761,465
singlet/doubletdoublet
Overlap genenone
Upstream geneTasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285P03.bB6Ng01-285P03.g
ACCGA084265GA084266
length7631,087
definitionB6Ng01-285P03.b B6Ng01-285P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,587,989 - 140,589,036)(140,760,374 - 140,761,465)
sequence
gaattctccaatattcttcacatgtggggatccctttactaaggcctctt
cttttgttgtcctcagtaattattaactgcggtctggctcttctgtgttc
caggtataaattccaactcttgataacatcttttctttcccttcacaaat
tagagagcagaacctcaagatgaagtgaccaaacatacctaagtcactta
gcacatggtttaattgttccataagtgattattactgtaaggtggttaca
ttggctacatcgctgtgtttatttttcttagcattgtaacttttaaccat
ttaaagaaaaaacaaaaacccatgtcatgaacaataggatagtataggtt
atttttacccatcaaagactccagagtaaaacccaaaatcgttaaagtgc
cctataaggctcaatctcttctagcaattctttccttcaatccaaaaagc
acagagatactgttgtatctgctggaattcatcttgctctgccaggtggc
caggtagcctacaccttctcctggcttctgcttagatgtcacttcattgg
tgatgccttacctgaggggacagaatccagagcccagagcacttcctatc
actcctccaaatgacttatttgtttgtttgtttgtttggcatgcttatca
tgtattacactgttggttacagatatatgtatatgtgtatctgtgtatat
gtttgtatgtggatatttgcatatgtgcatatgtgtatgtgtatatgtat
gtgtaggggagat

gaattctcactctaatagtcacacaaataagctgaataataatattgaaa
gtcaccttgaaattaataataaaatacttagaaaaatggtaaaaaaaatt
acttctggagaaaactgtgaaagtaaaaggataaaaaggataaaaacaag
acttttgtttcacctttagtcagaaatatctagattaagcaaaggggaga
tttggtgtgaacaggagtttgaatgaatcttcagatgtatatactttcaa
aaatgattctggggatttctacatgtttattacttgtgatgttcattcct
tttaaagtctaattaaaataaaatttcaatcccaatctgcactagaagct
gaagacaagcaaataaaagttgaagaccaccggcagtggtggcacatgcc
tttaatcccaacacttgggaagcagaggcaggtggatttctgagttcaag
gccagcccggtctacagagtgagttccaggacagccaggactacacaaag
aaaccctgtctcaaaaaaaaaaaaaaaaaaaaaagttgaagacattggat
aataagagtatctgtttaatcattcacagttgaaaacagagttacagtat
aacaaaatgacttaatgaaaaactatttaaatgtaataaaaatttaaatg
taacaaacaattttacgtgtttaaacataaaattttaaacttaataaaaa
tttaaatgcaataaaatattgaatgtataagttttctggatacggctatc
ttaacttaatgttagtgttggtaaatattgtactttatagctgaatgcaa
taagcaattttcatgtttctgactataatttcagaatctgaaatttataa
tggatgatatgacagactttttaaaaaccaacaccaccaaaaataattgg
agagggaaaaaaataaaaccaataagtaaaaagccaagcagaaacacctg
gggtaaaaagcaacaactgagctattatagctttctccccaagcaggact
ctccctgagctggggaagaaggcgatggattgtatttcatccaggaccct
ccctctgttttccttgacagatagcttggtagccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140587989_140589036
seq2: B6Ng01-285P03.b_47_809

seq1  GAATTCTCCAATATTCTTCACATGTGGGGATCCCTTTACTAAGGCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAATATTCTTCACATGTGGGGATCCCTTTACTAAGGCCTCTT  50

seq1  CTTTTGTTGTCCTCAGTAATTATTAACTGCGGTCTGGCTCTTCTGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGTCCTCAGTAATTATTAACTGCGGTCTGGCTCTTCTGTGTTC  100

seq1  CAGGTATAAATTCCAACTCTTGATAACATCTTTTCTTTCCCTTCACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATAAATTCCAACTCTTGATAACATCTTTTCTTTCCCTTCACAAAT  150

seq1  TAGAGAGCAGAACCTCAAGATGAAGTGACCAAACATACCTAAGTCACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCAGAACCTCAAGATGAAGTGACCAAACATACCTAAGTCACTTA  200

seq1  GCACATGGTTTAATTGTTCCATAAGTGATTATTACTGTAAGGTGGTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTTTAATTGTTCCATAAGTGATTATTACTGTAAGGTGGTTACA  250

seq1  TTGGCTACATCGCTGTGTTTATTTTTCTTAGCATTGTAACTTTTAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTACATCGCTGTGTTTATTTTTCTTAGCATTGTAACTTTTAACCAT  300

seq1  TTAAAGAAAAAACAAAAACCCATGTCATGAACAATAGGATAGTATAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAAAACAAAAACCCATGTCATGAACAATAGGATAGTATAGGTT  350

seq1  ATTTTTACCCATCAAAGACTCCAGAGTAAAACCCAAAATCGTTAAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCCATCAAAGACTCCAGAGTAAAACCCAAAATCGTTAAAGTGC  400

seq1  CCTATAAGGCTCAATCTCTTCTAGCAATTCTTTCCTTCAATCCAAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGGCTCAATCTCTTCTAGCAATTCTTTCCTTCAATCCAAAAAGC  450

seq1  ACAGAGATACTGTTGTATCTGCTGGAATTCATCTTGCTCTGCCAGGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATACTGTTGTATCTGCTGGAATTCATCTTGCTCTGCCAGGTGGC  500

seq1  CAGGTAGCCTACACCTTCTCCTGGCTTCTGCTTAGATGTCACTTCATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCCTACACCTTCTCCTGGCTTCTGCTTAGATGTCACTTCATTGG  550

seq1  TGATGCCTTACCTGAGGGGACAGAATCCAGAGCCCAGAGCACTTCCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTTACCTGAGGGGACAGAATCCAGAGCCCAGAGCACTTCCTATC  600

seq1  ACTCCTCCAAATGACTTATTTGTTTGTTTGTTTGTTTGGCATGCTTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCAAATGACTTATTTGTTTGTTTGTTTGTTTGGCATGCTTATCA  650

seq1  TGTATTACACTGTTGGTTACAGATATATGTATATGTGTATCTGTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACACTGTTGGTTACAGATATATGTATATGTGTATCTGTGTATAT  700

seq1  GTTTGTATGTGGATATTTGCATATGTGCATATGTGTATGTGTATATGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATGTGGATATTTGCATATGTGCATATGTGTATGTGTATATGTAT  750

seq1  GTGTA-GGGAGATGGGGATTACTCGATTGTTTCTTTCTACTAAGGGACAT  799
      ||||| |||||||                                     
seq2  GTGTAGGGGAGAT-------------------------------------  763

seq1  AGGTTTCATGACGGAAGAAATGATTCTTTAGAACCTAAAAGTGCCTGGAA  849
                                                        
seq2  --------------------------------------------------  763

seq1  TTTAGTCTGAGTGTAATAAATATTTGTAGAATGAATCAAGAAATACTTGC  899
                                                        
seq2  --------------------------------------------------  763

seq1  CCTTTTACAATTTTTGCCAGAACAAAGCACAAAGGAAATATCACTAAGAA  949
                                                        
seq2  --------------------------------------------------  763

seq1  GATGCCGAAAAGCACAGTGAGTGAGCACTTTTATGCCAGCCTGTGACACA  999
                                                        
seq2  --------------------------------------------------  763

seq1  AAGGATTGACCTATGGACTACAACTAGGATTTTGTGAAATGGTAGAGAT  1048
                                                       
seq2  -------------------------------------------------  763


seq1: chr2_140760374_140761465
seq2: B6Ng01-285P03.g_68_1154 (reverse)

seq1  GCTGGCTTACCCAGCTATCCTGTTTCAAGGAAAACAGAGGAAGGTTCTTG  50
      |||||| |||| |||||||   | |||||||||||||||| ||| || ||
seq2  GCTGGC-TACCAAGCTATC---TGTCAAGGAAAACAGAGGGAGGGTCCTG  46

seq1  GATGAAATACAATCCATCGCCTTCTTCCCCAGCCTCAGGGAGAGTCCTGC  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATGAAATACAATCCATCGCCTTCTTCCCCAG-CTCAGGGAGAGTCCTGC  95

seq1  TTGGGGAGAAAGCTATAATTAGCTCAGTTGTTGCTTTTTACCCCAGTTGT  150
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TTGGGGAGAAAGCTATAA-TAGCTCAGTTGTTGCTTTTTACCCCAGGTGT  144

seq1  TTCTGCTTGGCTTTTTACTTATTGGTTTTATTTTTTT-CCTCTCCAATTA  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCTGCTTGGCTTTTTACTTATTGGTTTTATTTTTTTCCCTCTCCAATTA  194

seq1  TTTTTGGTGGTGTTGGTTTTTAAAAAGTCTGTCATATCATCCCTTATAAA  249
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTGGTGGTGTTGGTTTTTAAAAAGTCTGTCATATCATCCATTATAAA  244

seq1  TTTCAGATTCTGAAATTATAGTCAGAAACATGAAAATTGCTTATTGCATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATTCTGAAATTATAGTCAGAAACATGAAAATTGCTTATTGCATT  294

seq1  CAGCTATAAAGTACAATATTTACCAACACTAACATTAAGTTAAGATAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAAAGTACAATATTTACCAACACTAACATTAAGTTAAGATAGCC  344

seq1  GTATCCAGAAAACTTATACATTCAATATTTTATTGCATTTAAATTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGAAAACTTATACATTCAATATTTTATTGCATTTAAATTTTTAT  394

seq1  TAAGTTTAAAATTTTATGTTTAAACACGTAAAATTGTTTGTTACATTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAAAATTTTATGTTTAAACACGTAAAATTGTTTGTTACATTTAA  444

seq1  ATTTTTATTACATTTAAATAGTTTTTCATTAAGTCATTTTGTTATACTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTACATTTAAATAGTTTTTCATTAAGTCATTTTGTTATACTGT  494

seq1  AACTCTGTTTTCAACTGTGAATGATTAAACAGATACTCTTATTATCCAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTTTCAACTGTGAATGATTAAACAGATACTCTTATTATCCAAT  544

seq1  GTCTTCAACTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTTTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAACTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTTTGTG  594

seq1  TAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCGGGCTGGCCTTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCGGGCTGGCCTTGAAC  644

seq1  TCAGAAATCCACCTGCCTCTGCTTCCCAAGTGTTGGGATTAAAGGCATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCACCTGCCTCTGCTTCCCAAGTGTTGGGATTAAAGGCATGT  694

seq1  GCCACCACTGCCGGTGGTCTTCAACTTTTATTTGCTTGTCTTCAGCTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTGCCGGTGGTCTTCAACTTTTATTTGCTTGTCTTCAGCTTCT  744

seq1  AGTGCAGATTGGGATTGAAATTTTATTTTAATTAGACTTTAAAAGGAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGATTGGGATTGAAATTTTATTTTAATTAGACTTTAAAAGGAATG  794

seq1  AACATCACAAGTAATAAACATGTAGAAATCCCCAGAATCATTTTTGAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACAAGTAATAAACATGTAGAAATCCCCAGAATCATTTTTGAAAG  844

seq1  TATATACATCTGAAGATTCATTCAAACTCCTGTTCACACCAAATCTCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATCTGAAGATTCATTCAAACTCCTGTTCACACCAAATCTCCCC  894

seq1  TTTGCTTAATCTAGATATTTCTGACTAAAGGTGAAACAAAAGTCTTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAATCTAGATATTTCTGACTAAAGGTGAAACAAAAGTCTTGTTT  944

seq1  TTATCCTTTTTATCCTTTTACTTTCACAGTTTTCTCCAGAAGTAATTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTTTTATCCTTTTACTTTCACAGTTTTCTCCAGAAGTAATTTTT  994

seq1  TTTACCATTTTTCTAAGTATTTTATTATTAATTTCAAGGTGACTTTCAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTTTTCTAAGTATTTTATTATTAATTTCAAGGTGACTTTCAAT  1044

seq1  ATTATTATTCAGCTTATTTGTGTGACTATTAGAGTGAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTCAGCTTATTTGTGTGACTATTAGAGTGAGAATTC  1087


| Home | SequenceCutter | Blast | Download |