BAC Information

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BAC

Clone NameB6Ng01-285P20
Chromosome2 (Build37)
Map Location 9,833,897 - 9,967,591
singlet/doubletdoublet
Overlap geneTaf3
Upstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik
Downstream geneAtp5c1, Kin, Itih2, Itih5, Sfmbt2, LOC100040690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285P20.bB6Ng01-285P20.g
ACCGA084299GA084300
length1,100658
definitionB6Ng01-285P20.b B6Ng01-285P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,966,493 - 9,967,591)(9,833,897 - 9,834,548)
sequence
gaattcacagagatctgcttgtctctgcctcctgaatgctgggattaaag
atacgtgctgccactgtccagtatgaaactttttataattacccatcttt
ttctagtcagttttcttctcttccttttcgctcttttttttaatgagaat
atgattcgaagattcattatttcccatttggatttggtgacttgttaaaa
atgcttacttattaaacagatggttttagagtgcaaggttgcaggctatc
cattcattttctagctaacagtttcctgagtgtatatactggtttagctc
caccatagtgtgatacaaatacagttagggttctccagtctgttagcaca
ttagtactgtagtagaatatgaaaataatcaattcatcccatgagaaagg
gtacgtacatgtatgcacacacacacacacacacacacacacacacacac
agagaattacaaatttcttttaaaactgagttctgtaacttcaggttact
attatgtcatcttgtattctataatcagttctcttggtgtttctgacaag
cgtttattgagcactacttataaactgagcttgggctgagggttgtggaa
tacaagctctgtctaccagggtgtcagaatatcgacacacgtaggctgat
ggtgtgtgatcctttttctaaaataaatacataaaaattaaaacaagtac
agaagttgctattaattcctcaagtaacaaagttataaatttttctaagg
tgacagtttctcctacacatgttgacgcattggtccctgggtatgggtac
tgctatgtcgtactgaaagcaggtactaagcctttctgatgggtctcatg
attcgtaccctgacttcattatcttatggtactggcagtatatgtaaacc
gagtaaaacagagggaatatatgtttagctgtggattccagggaacactt
gctttggggggaaagataaagtttgagttgagttatgaagtatgtttgtg
tagaaatggagagactgtagtcagaagacagcattacatgtgtagtgaaa
gtacccactagactggactgctaaacctggcccaagctagctcaattaga


gaattcttacctaatgatctatctctccagatgcaaaatgttgcatttaa
aggacatgaaggataaactgtccagctcctggactgttctcattttcagt
gaccactaactggcctgcacatacggagtaacgtctgagcctcatacttt
ataaatgaatgcaagcatcccaaagaaacaatttcctaacagaaatgacc
ggtactgttatacaagatgacatgccgtcattcttcagccatagtaacta
tgcgacttttaaactagagagcaacagtgaggggaggaggttgggtataa
aagtatttgtattgagaactgtgtgttcagtgaacctcactggtgagagc
cttcttggtggaagctttctctatctcggtgttcactttatactttagtt
tggctggtaggtctttgtttaatcatcccattgaagggagaacagaggtg
ggttaggtgacatggtgagtaaatgcagtatatttttatctctgtaaaaa
gccccatggtcggaatactctgatagcctctgattttctccaggtttgga
atcacacatcagtttggaggataaagatcccccattgtatttagtggcag
acacctttctgaaagacaaatacctcgtcagctacagaagacgatgcctt
gccagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9966493_9967591
seq2: B6Ng01-285P20.b_46_1145 (reverse)

seq1  TCTAA-TGAGCTAGCT--GGGCAGGGTTAGCAGTCCAGTCTAGTGGGTAC  47
      ||||| ||||||||||  || |||| ||||||||||||||||||||||||
seq2  TCTAATTGAGCTAGCTTGGGCCAGGTTTAGCAGTCCAGTCTAGTGGGTAC  50

seq1  TTTCACTACACATGT-ATGCTGTCTTCTGACCTACAGTTCTCTCCATTTC  96
      ||||||||||||||| |||||||||||||| |||||| ||||||||||||
seq2  TTTCACTACACATGTAATGCTGTCTTCTGA-CTACAG-TCTCTCCATTTC  98

seq1  TACACAAACATACTTCATACTTCAACTCAAACTTTATCTTTTCCCCCCAA  146
      |||||||||||||||||||  ||||||||||||||||| |||||||||||
seq2  TACACAAACATACTTCATAACTCAACTCAAACTTTATC-TTTCCCCCCAA  147

seq1  AGCAAGTGTTCCCTGGAATCCACAGCTAAACATATATTCCCTCTGTTTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTTCCCTGGAATCCACAGCTAAACATATATTCCCTCTGTTTTA  197

seq1  CTCGGTTTACATATACTGCCAGTACCATAAGATAATGAAGTCAGGGTACG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTTTACATATACTGCCAGTACCATAAGATAATGAAGTCAGGGTACG  247

seq1  AATCATGAGACCCATCAGAAAGGCTTAGTACCTGCTTTCAGTACGACATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGACCCATCAGAAAGGCTTAGTACCTGCTTTCAGTACGACATA  297

seq1  GCAGTACCCATACCCAGGGACCAATGCGTCAACATGTGTAGGAGAAACTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACCCATACCCAGGGACCAATGCGTCAACATGTGTAGGAGAAACTG  347

seq1  TCACCTTAGAAAAATTTATAACTTTGTTACTTGAGGAATTAATAGCAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAGAAAAATTTATAACTTTGTTACTTGAGGAATTAATAGCAACT  397

seq1  TCTGTACTTGTTTTAATTTTTATGTATTTATTTTAGAAAAAGGATCACAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTGTTTTAATTTTTATGTATTTATTTTAGAAAAAGGATCACAC  447

seq1  ACCATCAGCCTACGTGTGTCGATATTCTGACACCCTGGTAGACAGAGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGCCTACGTGTGTCGATATTCTGACACCCTGGTAGACAGAGCTT  497

seq1  GTATTCCACAACCCTCAGCCCAAGCTCAGTTTATAAGTAGTGCTCAATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCACAACCCTCAGCCCAAGCTCAGTTTATAAGTAGTGCTCAATAA  547

seq1  ACGCTTGTCAGAAACACCAAGAGAACTGATTATAGAATACAAGATGACAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTGTCAGAAACACCAAGAGAACTGATTATAGAATACAAGATGACAT  597

seq1  AATAGTAACCTGAAGTTACAGAACTCAGTTTTAAAAGAAATTTGTAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAACCTGAAGTTACAGAACTCAGTTTTAAAAGAAATTTGTAATTC  647

seq1  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATACATGTACG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATACATGTACG  697

seq1  TACCCTTTCTCATGGGATGAATTGATTATTTTCATATTCTACTACAGTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTCTCATGGGATGAATTGATTATTTTCATATTCTACTACAGTAC  747

seq1  TAATGTGCTAACAGACTGGAGAACCCTAACTGTATTTGTATCACACTATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGCTAACAGACTGGAGAACCCTAACTGTATTTGTATCACACTATG  797

seq1  GTGGAGCTAAACCAGTATATACACTCAGGAAACTGTTAGCTAGAAAATGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTAAACCAGTATATACACTCAGGAAACTGTTAGCTAGAAAATGA  847

seq1  ATGGATAGCCTGCAACCTTGCACTCTAAAACCATCTGTTTAATAAGTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGCCTGCAACCTTGCACTCTAAAACCATCTGTTTAATAAGTAAG  897

seq1  CATTTTTAACAAGTCACCAAATCCAAATGGGAAATAATGAATCTTCGAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACAAGTCACCAAATCCAAATGGGAAATAATGAATCTTCGAAT  947

seq1  CATATTCTCATTAAAAAAAAGAGCGAAAAGGAAGAGAAGAAAACTGACTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTCATTAAAAAAAAGAGCGAAAAGGAAGAGAAGAAAACTGACTA  997

seq1  GAAAAAGATGGGTAATTATAAAAAGTTTCATACTGGACAGTGGCAGCACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATGGGTAATTATAAAAAGTTTCATACTGGACAGTGGCAGCACG  1047

seq1  TATCTTTAATCCCAGCATTCAGGAGGCAGAGACAAGCAGATCTCTGTGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAATCCCAGCATTCAGGAGGCAGAGACAAGCAGATCTCTGTGAA  1097

seq1  TTC  1099
      |||
seq2  TTC  1100


seq1: chr2_9833897_9834548
seq2: B6Ng01-285P20.g_63_720

seq1  GAATTCTTACCTAATGATCTATCTCTCCAGATGCAAAATGTTGCATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTAATGATCTATCTCTCCAGATGCAAAATGTTGCATTTAA  50

seq1  AGGACATGAAGGATAAACTGTCCAGCTCCTGGACTGTTCTCATTTTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGAAGGATAAACTGTCCAGCTCCTGGACTGTTCTCATTTTCAGT  100

seq1  GACCACTAACTGGCCTGCACATACGGAGTAACGTCTGAGCCTCATACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTAACTGGCCTGCACATACGGAGTAACGTCTGAGCCTCATACTTT  150

seq1  ATAAATGAATGCAAGCATCCCAAAGAAACAATTTCCTAACAGAAATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAATGCAAGCATCCCAAAGAAACAATTTCCTAACAGAAATGACC  200

seq1  GGTACTGTTATACAAGATGACATGCCGTCATTCTTCAGCCATAGTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTTATACAAGATGACATGCCGTCATTCTTCAGCCATAGTAACTA  250

seq1  TGCGACTTTTAAACTAGAGAGCAACAGTGAGGGGAGGAGGTTGGGTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGACTTTTAAACTAGAGAGCAACAGTGAGGGGAGGAGGTTGGGTATAA  300

seq1  AAGTATTTGTATTGAGAACTGTGTGTTCAGTGAACCTCACTGGTGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGTATTGAGAACTGTGTGTTCAGTGAACCTCACTGGTGAGAGC  350

seq1  CTTCTTGGTGGAAGCTTTCTCTATCTCGGTGTTCACTTTATACTTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGTGGAAGCTTTCTCTATCTCGGTGTTCACTTTATACTTTAGTT  400

seq1  TGGCTGGTAGGTCTTTGTTTAATCATCCCATTGAAGGGAGAACAGAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTAGGTCTTTGTTTAATCATCCCATTGAAGGGAGAACAGAGGTG  450

seq1  GGTTAGGTGACATGGTGAGT-AATGCAGTATATTTTTATCTCTGTAAAAA  499
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTTAGGTGACATGGTGAGTAAATGCAGTATATTTTTATCTCTGTAAAAA  500

seq1  GCCCCATGGTCGGAATACTCTGATAGCCTCTGATTTTCTCCAGGTTTGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGGTCGGAATACTCTGATAGCCTCTGATTTTCTCCAGGTTTGGA  550

seq1  ATCACACATCAG-TTGGAGGATAAAGAT-CCCCACTGTATTTAGTGGCAG  597
      |||||||||||| ||||||||||||||| ||||| |||||||||||||||
seq2  ATCACACATCAGTTTGGAGGATAAAGATCCCCCATTGTATTTAGTGGCAG  600

seq1  ACACC-TTCTG-AAGACAAATACCTCGTCAGCTACAG-AGACGATGCCTT  644
      ||||| ||||| ||||||||||||||||||||||||| ||||||||||||
seq2  ACACCTTTCTGAAAGACAAATACCTCGTCAGCTACAGAAGACGATGCCTT  650

seq1  GCCAGCCT  652
      ||||||||
seq2  GCCAGCCT  658


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