BAC Information

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BAC

Clone NameB6Ng01-286H18
Chromosome2 (Build37)
Map Location 37,998,454 - 38,135,281
singlet/doubletdoublet
Overlap geneDennd1a
Upstream geneOlfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286H18.bB6Ng01-286H18.g
ACCGA084669GA084670
length1,1931,057
definitionB6Ng01-286H18.b B6Ng01-286H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,998,454 - 37,999,653)(38,134,222 - 38,135,281)
sequence
gaattcacaccccaaggccaaagctttcctgccaccagtccttcaaatct
gacttggacattacacgggaggaggctccaagcctccctgaggtctcact
ccttttacaacacacgaaaaagcagtcgataatgggcccatgctgaattc
actgctccccacgtctcctcttgggacacaagcctagcagatgtgataaa
aactgtgtcagagaagtggctctagtttgtgccttaatgacaacttaaac
ctctacaccaatacaaccaagagatgaacagagctgcctgttacctctct
ctgctgccaatcttccaataccttggaactaaattagcgcctctccccac
aacttcccctgccacccctcaaaacctattctaattttaaaagataaatg
agttcagaaaacacactggtggcacaagtgtctgggtgctgtgtgtgtgg
atgtcctataattaaacgctgacacatatttcatagagtttgtattttct
caaggtatgattgaacattcagatgtcataaaagactgcctactaaactc
cctctgatcaccaccccagtacccatattcacatataccgctgggagatt
tacagcctccaaaaaaaaaaatgcttcaaggtctaaagattatttttaaa
catgttcaaacataagagaggtgatattccaagttaatgaaacattctaa
ttattaaaatttatacaggacaatttcttaaaccataggcggttatactt
ttcttttaactcataagaactctttgtcttatctaatgatatggtaccat
aaaaatctatttaaatgtgtacctctgataacattttctaaattctataa
ttcagccttcagatgatgggtcttttaacccagtatcttgaaagcctatt
cagccacaattgcatacccacttaatcagcaatcattgttctgggatgtg
ggactttgttgtcagacaagcaacaaaaccctttaaaaaaaaaatttttt
tttttttcagaactgcatagaaaaaagtgattcttttgtcagacagaaca
atttatgcaaatcttttataaacattcacaaaacatttatttaagccttt
tgaatgttgctcaattgagagccatggaaatgaggggtagtgaaaacgca
agacgctagagctggcagcctcattaaatattcggaaaggaag
gaattcagtgagcactgcaatgggatcttgctggggcttttaagtagact
actagcagcagcagactagagtgcagtggccaaacagtggcatccctggg
ttgtgcaaggtgatccattggaacatggggaaaagacttagtttaatgat
aactttaaggacttctgtactttctaatttattgatgtaactataaacca
ttagagtatatatggatatgtgtaaagtgtgttgcttagtttttactgac
aggaatgtgtgtgggaaaaggaatgctgaaggattgtggaaggaactatg
caatagtttatgttgcaggagatgaaggcctgatctgaggttttggtatt
gaaaagaaaagaatgggtttcagagaaattttaggtagatgtgacaggag
gttgtagactctagaaatgagtgaagatgatctagtaaacttagctaagt
tatattttaaataagatgttcataaggtgaggatccgtgtacgatgtatt
tacatttgggagaaggtgttttggtctgcagtgaggatttttgtttgttt
gttttgttttgtttatgtgtaaccctggctgtactggagctcattctgca
aatcaggttggccttgaacagagattcatctgcctctgtctccctggtgc
tggggttaaaggtgctcaccactaccatctggggaaagggaaagaacttt
taagagccccatggtgaaggcatgagctctgctagacaagtaagacttaa
agtgggcaagaaaggaaatctatccctggcaattttagaaagagaaagca
acagaaagaaaccgtttttgaacttgttagccttaggaaaggtttcctgg
atgttgcattgatattgcttaggccttgtgaataaacagacagaagaaat
tggtctagagtaagtgctgtttgagtcctagctgagtttgtactccaggg
tgtgagtgaggctggaataagggtataatgctgagcagcaacccctttcc
caaatgtgttatgacatagcagctttgtatactgtctccaaattctggag
tctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37998454_37999653
seq2: B6Ng01-286H18.b_46_1238

seq1  GAATTCACACCCCAAGGCCAAAGCTTTCCTGCCACCAGTCCTTCAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCCCAAGGCCAAAGCTTTCCTGCCACCAGTCCTTCAAATCT  50

seq1  GACTTGGACATTACACGGGAGGAGGCTCCAAGCCTCCCTGAGGTCTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGACATTACACGGGAGGAGGCTCCAAGCCTCCCTGAGGTCTCACT  100

seq1  CCTTTTACAACACACGAAAAAGCAGTCGATAATGGGCCCATGCTGAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTACAACACACGAAAAAGCAGTCGATAATGGGCCCATGCTGAATTC  150

seq1  ACTGCTCCCCACGTCTCCTCTTGGGACACAAGCCTAGCAGATGTGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCCCACGTCTCCTCTTGGGACACAAGCCTAGCAGATGTGATAAA  200

seq1  AACTGTGTCAGAGAAGTGGCTCTAGTTTGTGCCTTAATGACAACTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTCAGAGAAGTGGCTCTAGTTTGTGCCTTAATGACAACTTAAAC  250

seq1  CTCTACACCAATACAACCAAGAGATGAACAGAGCTGCCTGTTACCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACCAATACAACCAAGAGATGAACAGAGCTGCCTGTTACCTCTCT  300

seq1  CTGCTGCCAATCTTCCAATACCTTGGAACTAAATTAGCGCCTCTCCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCAATCTTCCAATACCTTGGAACTAAATTAGCGCCTCTCCCCAC  350

seq1  AACTTCCCCTGCCACCCCTCAAAACCTATTCTAATTTTAAAAGATAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCTGCCACCCCTCAAAACCTATTCTAATTTTAAAAGATAAATG  400

seq1  AGTTCAGAAAACACACTGGTGGCACAAGTGTCTGGGTGCTGTGTGTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAAAACACACTGGTGGCACAAGTGTCTGGGTGCTGTGTGTGTGG  450

seq1  ATGTCCTATAATTAAACGCTGACACATATTTCATAGAGTTTGTATTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTATAATTAAACGCTGACACATATTTCATAGAGTTTGTATTTTCT  500

seq1  CAAGGTATGATTGAACATTCAGATGTCATAAAAGACTGCCTACTAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATGATTGAACATTCAGATGTCATAAAAGACTGCCTACTAAACTC  550

seq1  CCTCTGATCACCACCCCAGTACCCATATTCACATATACCGCTGGGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATCACCACCCCAGTACCCATATTCACATATACCGCTGGGAGATT  600

seq1  TACAGCCTCCAAAAAAAAAAATGCTTCAAGGTCTAAAGATTATTTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTCCAAAAAAAAAAATGCTTCAAGGTCTAAAGATTATTTTTAAA  650

seq1  CATGTTCAAACATAAGAGAGGTGATATTCCAAGTTAATGAAACATTCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAACATAAGAGAGGTGATATTCCAAGTTAATGAAACATTCTAA  700

seq1  TTATTAAAATTTATACAGGACAATTTCTTAAACCATAGGCGGTTATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAATTTATACAGGACAATTTCTTAAACCATAGGCGGTTATACTT  750

seq1  TTCTTTTAACTCATAAGAACTCTTTGTCTTATCTAATGATATGGTACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAACTCATAAGAACTCTTTGTCTTATCTAATGATATGGTACCAT  800

seq1  AAAAATCTATTTAAATGTGTACCTCTGATAACATTTTCTAAATTCTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTATTTAAATGTGTACCTCTGATAACATTTTCTAAATTCTATAA  850

seq1  TTCAGCCTTCAGATGATGGGTCTTTTAACCCAGTATCTTGAAAGCCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTTCAGATGATGGGTCTTTTAACCCAGTATCTTGAAAGCCTATT  900

seq1  CAGCCACAATTGCATACCCACTTAATCAGCAATCATTGTTCTGGGATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAATTGCATACCCACTTAATCAGCAATCATTGTTCTGGGATGTG  950

seq1  GGACTTTGTTGTCAAGACAAGCACCAAAACC--TTTAAAAAAAAATTTTT  998
      ||||||||||||| ||||||||| |||||||  || ||||||||||||||
seq2  GGACTTTGTTGTC-AGACAAGCAACAAAACCCTTTAAAAAAAAAATTTTT  999

seq1  TTTTTTTTCAGAACTGGCATAAGAAAAAAGTGAT--CTTTGTCAGACAAG  1046
      ||||||||||||||| |||| |||||||||||||   |||||||||||  
seq2  TTTTTTTTCAGAACT-GCAT-AGAAAAAAGTGATTCTTTTGTCAGACA--  1045

seq1  GACAAATTTATGCAAATCTTTTATAAACATTCAC-AAACATTTATTT-AG  1094
      ||  |||||||||||||||||||||||||||||| |||||||||||| ||
seq2  GAACAATTTATGCAAATCTTTTATAAACATTCACAAAACATTTATTTAAG  1095

seq1  CTTTTGAAATGTTGGCCTCATTTGAGAG-CATGAAAATGAGGGGGAAGTA  1143
      | |||  |||||||  |||| ||||||| |||| |||||||||    |||
seq2  CCTTTTGAATGTTG--CTCAATTGAGAGCCATGGAAATGAGGG----GTA  1139

seq1  G-AAAAACGCAAAGGACAGCTTAGAAGCTGGCACGCTACATAAATATTCA  1192
      |  |||||||||  ||| || ||| ||||||||  ||   ||||||||| 
seq2  GTGAAAACGCAA--GAC-GC-TAG-AGCTGGCAGCCTCATTAAATATTCG  1184

seq1  G-AAGGAAG  1200
      | |||||||
seq2  GAAAGGAAG  1193

seq1: chr2_38134222_38135281
seq2: B6Ng01-286H18.g_69_1125 (reverse)

seq1  AGAGAGACT-CAGAATTTGGGAGACAGTATAC-AAGCTGGCTATGTCATA  48
      ||||||||| |||||||| ||||||||||||| ||||| |||||||||||
seq2  AGAGAGACTCCAGAATTT-GGAGACAGTATACAAAGCT-GCTATGTCATA  48

seq1  TACACATTTGGGGAAGGGGTTGCTGCTTCAGCATTATACCCCTTATTCCA  98
       ||||||||||| ||||||||||||| ||||||||||| |||||||||||
seq2  -ACACATTTGGGAAAGGGGTTGCTGC-TCAGCATTATA-CCCTTATTCCA  95

seq1  GCCTCACTCACACCCTGGAGTACAAACTCAGCTAGGACTCAAACAGCACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACTCACACCCTGGAGTACAAACTCAGCTAGGACTCAAACAGCACT  145

seq1  TACTCTAGACCAATTTCCTTCTGTCTGTTTATTCACAAGGCCTAAGCAAT  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACTCTAGACCAATTT-CTTCTGTCTGTTTATTCACAAGGCCTAAGCAAT  194

seq1  ATCAATGCAACATCCAGGAAACCTTTCCTAAGGCTAACAAGTTCAAAAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCAACATCCAGGAAACCTTTCCTAAGGCTAACAAGTTCAAAAAC  244

seq1  GGTTTCTTTCTGTTGCTTTCTCTTTCTAAAATTGCCAGGGATAGATTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTCTGTTGCTTTCTCTTTCTAAAATTGCCAGGGATAGATTTCC  294

seq1  -TTCTTGCCCACTTTAAGTCTTACTTGTCTAGCAGAGCTCATGCCTTCAC  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCCACTTTAAGTCTTACTTGTCTAGCAGAGCTCATGCCTTCAC  344

seq1  CATGGGGCTCTTAAAAGTTCTTTCCCTTTCCCCAGATGGTAGTGGTGAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGCTCTTAAAAGTTCTTTCCCTTTCCCCAGATGGTAGTGGTGAGC  394

seq1  ACCTTTAACCCCAGCACCAGGGAGACAGAGGCAGATGAATCTCTGTTCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACCCCAGCACCAGGGAGACAGAGGCAGATGAATCTCTGTTCAA  444

seq1  GGCCAACCTGATTTGCAGAATGAGCTCCAGTACAGCCAGGGTTACACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGATTTGCAGAATGAGCTCCAGTACAGCCAGGGTTACACATA  494

seq1  AACAAAACAAAACAAACAAACAAAAATCCTCACTGCAGACCAAAACACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAACAAACAAAAATCCTCACTGCAGACCAAAACACCT  544

seq1  TCTCCCAAATGTAAATACATCGTACACGGATCCTCACCTTATGAACATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAATGTAAATACATCGTACACGGATCCTCACCTTATGAACATCT  594

seq1  TATTTAAAATATAACTTAGCTAAGTTTACTAGATCATCTTCACTCATTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATATAACTTAGCTAAGTTTACTAGATCATCTTCACTCATTTC  644

seq1  TAGAGTCTACAACCTCCTGTCACATCTACCTAAAATTTCTCTGAAACCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTACAACCTCCTGTCACATCTACCTAAAATTTCTCTGAAACCCA  694

seq1  TTCTTTTCTTTTCAATACCAAAACCTCAGATCAGGCCTTCATCTCCTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTCAATACCAAAACCTCAGATCAGGCCTTCATCTCCTGCA  744

seq1  ACATAAACTATTGCATAGTTCCTTCCACAATCCTTCAGCATTCCTTTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTATTGCATAGTTCCTTCCACAATCCTTCAGCATTCCTTTTCC  794

seq1  CACACACATTCCTGTCAGTAAAAACTAAGCAACACACTTTACACATATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATTCCTGTCAGTAAAAACTAAGCAACACACTTTACACATATCC  844

seq1  ATATATACTCTAATGGTTTATAGTTACATCAATAAATTAGAAAGTACAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTCTAATGGTTTATAGTTACATCAATAAATTAGAAAGTACAGA  894

seq1  AGTCCTTAAAGTTATCATTAAACTAAGTCTTTTCCCCATGTTCCAATGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTAAAGTTATCATTAAACTAAGTCTTTTCCCCATGTTCCAATGGA  944

seq1  TCACCTTGCACAACCCAGGGATGCCACTGTTTGGCCACTGCACTCTAGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGCACAACCCAGGGATGCCACTGTTTGGCCACTGCACTCTAGTC  994

seq1  TGCTGCTGCTAGTAGTCTACTTAAAAGCCCCAGCAAGATCCCATTGCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCTAGTAGTCTACTTAAAAGCCCCAGCAAGATCCCATTGCAGT  1044

seq1  GCTCACTGAATTC  1060
      |||||||||||||
seq2  GCTCACTGAATTC  1057