BAC Information

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BAC

Clone NameB6Ng01-287M10
Chromosome2 (Build37)
Map Location 163,307,372 - 163,465,004
singlet/doubletdoublet
Overlap geneLOC100043899, Hnf4a, 5830472M02Rik, Serinc3
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik
Downstream genePkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M10.bB6Ng01-287M10.g
ACCGA085609GA085610
length1,112914
definitionB6Ng01-287M10.b B6Ng01-287M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,463,888 - 163,465,004)(163,307,372 - 163,308,306)
sequence
gaattccactgtaactcggctcatctacgcttttatcctcttccttggca
ctattgtgtcttgcatcatgatgacagaaggcatacaaactcaactgaag
aaggtaagtagaagttatagcgtcttaccatgtggttgttttttaaaatt
acttttttatactttacaatacttgtaatttttttactgttatacttgat
caaggtcatttaaaatagtttttaaaaaattttattttctgtgtatgagt
gttctcaaatgtgtcatgatgcctgcagaagccagaaagagggtgttgtg
tcccctagaactggagttatgaatggttgtgaacctaccatatgagttct
ggcattgcaacctaatagggtttcttgtagcctagattgaccttaaactt
actgtgtagtttaggctaactttgaactggcctcatgcttcaaacccccc
atggcttttgtggtgtatatctggcagacctatgctttgccactgtacct
ttctttcttgaacccagtcaaaccaccgcatgagggaaacaccacacaaa
gcttagttcagaaacaatggtaactcagtcgctgggtacaacaactagaa
tcctaatgtaagccatgttaaatctaaatcctctggtggcaaatccttgc
agattctccatagggcacactagtagctacatcttgccctcttactatcc
ctttccaaaaggcccctaactctctctcctcttcctctcttcctccctct
aacccagaagtcccaccttctcgcccagtgattgattcctttattcatta
ggggacccattccccattccccattccctggtccagacaaccctttctgg
gaaatggaaattaacatcaaaatacaacaactccccggccatccccaaca
accaaatttagaaattactctttttcttgtttgtgtaagctgtaagctat
tattagtactttactttgggaggagtttattatagctgaaaagtttgtgg
ggaaaagagaataactcgggaagatgggttatttaagactgacttatcct
gagtcctgcccttgtttcagaaatgcttactgagaaaacacccggaagcc
tgcattgcactt
gaattcttagggtccagctgggtggtggctgcgggccttgcaggaatgtg
cggcttggtggccaggcagggggcgctgacgcctggacttttccgctcca
gctgcttgggctggcgacacagcacattccgcggccacacctggcctgat
tgatgcagctgtcccagaccagggcgagaatttcctagtcctgcggccgc
cagccccgagggcatggccttgaccccggactgcaggggcatggcatagc
gggactatggagcatccctggggctctgggctaatggccacctcgccctg
cacagccaccagtcacccacacccacggcagggctctagccggcctgctc
tgctctgctctctggctctcctctccaccaccccagagcggctctctgac
ttagcctctgcaaacaccaggctaatgtccactgtctgtctctcggcaga
gctattcttaaatggggatgtgtctgcgcccttctcccgaaggttctggg
gactgtggaaaagcagacctttggcgggggagtaacgtgcaaagcgcctt
ccttgcgtggctcagcgctggtcttacctcaacctggcgcttagttgtgg
tctagggcggagcacggaggtctccagctgaaacttctgcggactggctt
ttggactctccagctccctctcagtcccagtattcccaaacatctcccta
gcctggccttcctgggtgcttcagtggaaccccgtttctgttttgctttg
ttttgtttttgttttttgggtttgtttgtttgtttgtttgttggttttcg
ggaggtggtcttgctccctgcctgagtcccgactcttccccagctaagca
cggctccttagtaatgaagatttgaagttttctgggcgtgtgtggggaag
gtattatatgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163463888_163465004
seq2: B6Ng01-287M10.b_46_1157 (reverse)

seq1  AAGTGCAGAGGCAGGCTTCCGGGTGTTTCTTCAGTAAGCAATTTTCTGAA  50
      ||||||| | ||||||||||||||||||  ||||||||||  ||||||||
seq2  AAGTGCA-ATGCAGGCTTCCGGGTGTTTTCTCAGTAAGCA--TTTCTGAA  47

seq1  --CAGGGCAGGACTCAGGATAAGTTCAGTTCTTAAATAACCCATCTTCCC  98
         |||||||||||||||||||| |||| |||||||||||||||||||||
seq2  ACAAGGGCAGGACTCAGGATAAG-TCAG-TCTTAAATAACCCATCTTCCC  95

seq1  GAGGTTATCTCCTTTTTCCCCACAAAACTTTTCAGCTATAATAAACTCCT  148
      ||| |  ||||  |||||||||| ||||||||||||||||||||||||||
seq2  GAGTTATTCTC--TTTTCCCCAC-AAACTTTTCAGCTATAATAAACTCCT  142

seq1  TCCAAAGTAAAGTACTAAT-ATAGCTTACAGCTTACACAAACAAGAAAAA  197
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAAAGTAAAGTACTAATAATAGCTTACAGCTTACACAAACAAGAAAAA  192

seq1  GAGTAATTTCTAAATTTGGTTGTTGGGGATGGCCGGGGAGTTGTTGTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTTCTAAATTTGGTTGTTGGGGATGGCCGGGGAGTTGTTGTATT  242

seq1  TTGATGTTAATTTCCATTTCCCAGAAAGGGTTGTCTGGACCAGGGAATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAATTTCCATTTCCCAGAAAGGGTTGTCTGGACCAGGGAATGG  292

seq1  GGAATGGGGAATGGGTCCCCTAATGAATAAAGGAATCAATCACTGGGCGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGGAATGGGTCCCCTAATGAATAAAGGAATCAATCACTGGGCGA  342

seq1  GAAGGTGGGACTTCTGGGTTAGAGGGAGGAAGAGAGGAAGAGGAGAGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGACTTCTGGGTTAGAGGGAGGAAGAGAGGAAGAGGAGAGAGA  392

seq1  GTTAGGGGCCTTTTGGAAAGGGATAGTAAGAGGGCAAGATGTAGCTACTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGGCCTTTTGGAAAGGGATAGTAAGAGGGCAAGATGTAGCTACTA  442

seq1  GTGTGCCCTATGGAGAATCTGCAAGGATTTGCCACCAGAGGATTTAGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCTATGGAGAATCTGCAAGGATTTGCCACCAGAGGATTTAGATT  492

seq1  TAACATGGCTTACATTAGGATTCTAGTTGTTGTACCCAGCGACTGAGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGCTTACATTAGGATTCTAGTTGTTGTACCCAGCGACTGAGTTA  542

seq1  CCATTGTTTCTGAACTAAGCTTTGTGTGGTGTTTCCCTCATGCGGTGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTTCTGAACTAAGCTTTGTGTGGTGTTTCCCTCATGCGGTGGTT  592

seq1  TGACTGGGTTCAAGAAAGAAAGGTACAGTGGCAAAGCATAGGTCTGCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGTTCAAGAAAGAAAGGTACAGTGGCAAAGCATAGGTCTGCCAG  642

seq1  ATATACACCACAAAAGCCATGGGGGGTTTGAAGCATGAGGCCAGTTCAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACCACAAAAGCCATGGGGGGTTTGAAGCATGAGGCCAGTTCAAA  692

seq1  GTTAGCCTAAACTACACAGTAAGTTTAAGGTCAATCTAGGCTACAAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCTAAACTACACAGTAAGTTTAAGGTCAATCTAGGCTACAAGAAA  742

seq1  CCCTATTAGGTTGCAATGCCAGAACTCATATGGTAGGTTCACAACCATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTAGGTTGCAATGCCAGAACTCATATGGTAGGTTCACAACCATTC  792

seq1  ATAACTCCAGTTCTAGGGGACACAACACCCTCTTTCTGGCTTCTGCAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCAGTTCTAGGGGACACAACACCCTCTTTCTGGCTTCTGCAGGC  842

seq1  ATCATGACACATTTGAGAACACTCATACACAGAAAATAAAATTTTTTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACACATTTGAGAACACTCATACACAGAAAATAAAATTTTTTAAA  892

seq1  AACTATTTTAAATGACCTTGATCAAGTATAACAGTAAAAAAATTACAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTAAATGACCTTGATCAAGTATAACAGTAAAAAAATTACAAGT  942

seq1  ATTGTAAAGTATAAAAAAGTAATTTTAAAAAACAACCACATGGTAAGACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGTATAAAAAAGTAATTTTAAAAAACAACCACATGGTAAGACG  992

seq1  CTATAACTTCTACTTACCTTCTTCAGTTGAGTTTGTATGCCTTCTGTCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTTCTACTTACCTTCTTCAGTTGAGTTTGTATGCCTTCTGTCAT  1042

seq1  CATGATGCAAGACACAATAGTGCCAAGGAAGAGGATAAAAGCGTAGATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGCAAGACACAATAGTGCCAAGGAAGAGGATAAAAGCGTAGATGA  1092

seq1  GCCGAGTTACAGTGGAATTC  1117
      ||||||||||||||||||||
seq2  GCCGAGTTACAGTGGAATTC  1112

seq1: chr2_163307372_163308306
seq2: B6Ng01-287M10.g_68_981

seq1  GAATTCTTAGGGTCCAGCTGGGTGGTGGCTGCGGGCCTTGCAGGAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGTCCAGCTGGGTGGTGGCTGCGGGCCTTGCAGGAATGTG  50

seq1  CGGCTTGGTGGCCAGGCAGGGGGCGCTGACGCCTGGACTTTTCCGCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTGGTGGCCAGGCAGGGGGCGCTGACGCCTGGACTTTTCCGCTCCA  100

seq1  GCTGCTTGGGCTGGCGACACAGCACATTCCGCGGCCACACCTGGCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGGGCTGGCGACACAGCACATTCCGCGGCCACACCTGGCCTGAT  150

seq1  TGATGCAGCTGTCCCAGACCAGGGCGAGAATTTCCTAGTCCTGCGGCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGCTGTCCCAGACCAGGGCGAGAATTTCCTAGTCCTGCGGCCGC  200

seq1  CAGCCCCGAGGGCATGGCCTTGACCCCGGACTGCAGGGGCATGGCATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCGAGGGCATGGCCTTGACCCCGGACTGCAGGGGCATGGCATAGC  250

seq1  GGGACTATGGAGCATCCCTGGGGCTCTGGGCTAATGGCCACCTCGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATGGAGCATCCCTGGGGCTCTGGGCTAATGGCCACCTCGCCCTG  300

seq1  CACAGCCACCAGTCACCCACACCCACGGCAGGGCTCTAGCCGGCCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACCAGTCACCCACACCCACGGCAGGGCTCTAGCCGGCCTGCTC  350

seq1  TGCTCTGCTCTCTGGCTCTCCTCTCCACCACCCCAGAGCGGCTCTCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTCTCTGGCTCTCCTCTCCACCACCCCAGAGCGGCTCTCTGAC  400

seq1  TTAGCCTCTGCAAACACCAGGCTAATGTCCACTGTCTGTCTCTCGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTCTGCAAACACCAGGCTAATGTCCACTGTCTGTCTCTCGGCAGA  450

seq1  GCTATTCTTAAATGGGGATGTGTCTGCGCCCTTCTCCCGAAGGTTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCTTAAATGGGGATGTGTCTGCGCCCTTCTCCCGAAGGTTCTGGG  500

seq1  GACTGTGGAAAAGCAGACCTTTGGCGGGGGAGTAACGTGCAAAGCGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGAAAAGCAGACCTTTGGCGGGGGAGTAACGTGCAAAGCGCCTT  550

seq1  CCTTGCGTGGCTCAGCGCTGGTCTTACCTCAACCTGGCGCTTAGTTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCGTGGCTCAGCGCTGGTCTTACCTCAACCTGGCGCTTAGTTGTGG  600

seq1  TCTAGGGCGGAGCACGGAGGTCTCCAGCTGAAACTTCTGCGGACTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCGGAGCACGGAGGTCTCCAGCTGAAACTTCTGCGGACTGGCTT  650

seq1  TTGGACTCTCCAGCTCCCTCTCAGTCCCAGTATTCCCAAACATCTCCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTCTCCAGCTCCCTCTCAGTCCCAGTATTCCCAAACATCTCCCTA  700

seq1  GCCTGGCCTTCCTGGGTGCTTCAGTGGAACCCCGTTTCTTGTTTTTGCTT  750
      |||||||||||||||||||||||||||||||||||||||   |||||| |
seq2  GCCTGGCCTTCCTGGGTGCTTCAGTGGAACCCCGTTTCT--GTTTTGC-T  747

seq1  TTGTTTTGTTTTTTGTTTTTTTGGGTTTTGTTTTGTTTTGTTTTGTTTTG  800
      |||||||| ||||||||||||  || |||||||   |||||||   ||||
seq2  TTGTTTTG-TTTTTGTTTTTT--GGGTTTGTTT--GTTTGTTT--GTTTG  790

seq1  TTGGTTTTTCGGGAGGTGGTTCTTGCTCCCTGCCTGAGTCCCGACTCTTC  850
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGG-TTTTCGGGAGGTGG-TCTTGCTCCCTGCCTGAGTCCCGACTCTTC  838

seq1  CCCAGCTAAGCACGGCTCCTTAAGGTTAATGAAGGATTTTGAAGTTTTTC  900
      ||||||||||||||||||||||    ||||||||   ||||||| |||||
seq2  CCCAGCTAAGCACGGCTCCTTA---GTAATGAAG--ATTTGAAG-TTTTC  882

seq1  TGGGCGGTGTGTTGGGGAAGGTATTTATATGTGGT  935
      ||||| ||||| ||||||||||| |||||||||||
seq2  TGGGC-GTGTG-TGGGGAAGGTA-TTATATGTGGT  914