BAC Information

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BAC

Clone NameB6Ng01-287M18
Chromosome2 (Build37)
Map Location 144,031,569 - 144,172,221
singlet/doubletdoublet
Overlap geneSnx5, 8430406I07Rik, Ovol2
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
Downstream genePpia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M18.bB6Ng01-287M18.g
ACCGA085623GA085624
length1,110733
definitionB6Ng01-287M18.b B6Ng01-287M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,031,569 - 144,032,703)(144,171,497 - 144,172,221)
sequence
gaattcacagcgatgttcctgcctctgtggtgtgcaccaccacaccctgc
caacctggctatctgaggctcactcacaacagtaacagagaatttatttt
ccttccatacccctcaccttcctcttcctttcccttctcaaaataactgt
gaatttattctgagcagtctgcgatggtcctctcggggatgaaagcatta
tccgttattcccatggacgagacttttaaaacccagttgatttttgttct
gaagaaagacacaaaaaccaatctgccccttgccccaaaggccagctctg
ggctttcaagttcaaacagcagccattccagtgcagcttcaagttttcct
tggggccttcaaaaaaaaaagaaaagaaaagaaagaaaagaaaagaaaaa
aagaaagaaagagagagagaaagaaaaaagaaaggaacactgcagagagt
taaaagaccctgttcaaaacaagactttgaatatcaagtggaccagcacg
aggaatgcaaacagcacactcacctgggcaaattgagaagagtttaatag
agaccatatacaaagatgcaggtcagtttataagacgatataaagctcat
cctatggccagcatcagtaggggaccctcccaaaggtgagggaacaatta
caggaactcagaaaagacaccacagagagggtcccagccagaaaatgtgg
ctttgggcaggagatgcacccaaacgacaggggctcaaaaaggaaaaggt
tatggggagggagacaccctgactctctctccctgtcctctaggtacatc
ttgaggacctagaacaacatcctaggaacccctgatgcaggctttaggat
ccagcatcccaagacactaagctgagtagatgaggcaccaggcaaagccc
aggtgcaaatgggacatctccagtacagatgcactgggagtccacattcc
aattagacatcacgggtgagtagagccaggactagcatttttcaggttta
tatctttacatatcatcactatttccctcaaagcaaggttaaccagcata
gaatttgattaatatggggtccttttgtccactgaccattgctgttcgac
tcatacttca
gacagtggtgacacgagcatttagtcccaacctttgaaaggcagaggcag
gtggatccccacaagtttgaggttagcctgatctacagagcgagttccag
gacagccaaggctacataaatttaaaggaataattccatgtaatatttct
cattttactgttgaaaactaaagacacatcttaaacaatatgctcttaac
ttacgttgattttacatagtggtgggtttcatcacacgtgtataggatgt
atttctagactatttctctagttccctctcttgtctcccttgccttcatc
tttccaactagttcccctataggggtgtgcttgtgtgtgtgtgtgtgtgt
gtgtgtgtatgtgtgcgatgagcttcattagcattgttcacacttgtgtg
ggcaccttacctgtgactatgcaatggaagaaagtttcaggataacatct
ttaaaaccaaccagaagggcaaaaggacactgggaaaacaagagtaagac
ctgcagccttcttctcaacagaatcaacaggaccctcagtgcactgggat
gtcttctaaggagctaagaggaaatttagccaccaaagagtctactttca
acttaaacatctgtgtaatgatgcaggtaaaataagatgtctccttacaa
tcaaaagcagaattttctttttttttttcattttttatttaggtatttta
gctcatttacattttccaattgctataccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144031569_144032703
seq2: B6Ng01-287M18.b_50_1159

seq1  GAATTCACAGCGATGTTCCTGCCTCTGTGGTGTGCACCACCACACCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCGATGTTCCTGCCTCTGTGGTGTGCACCACCACACCCTGC  50

seq1  CAACCTGGCTATCTGAGGCTCACTCACAACAGTAACAGAGAATTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCTATCTGAGGCTCACTCACAACAGTAACAGAGAATTTATTTT  100

seq1  CCTTCCATACCCCTCACCTTCCTCTTCCTTTCCCTTCTCAAAATAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATACCCCTCACCTTCCTCTTCCTTTCCCTTCTCAAAATAACTGT  150

seq1  GAATTTATTCTGAGCAGTCTGCGATGGTCCTCTCGGGGATGAAAGCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTCTGAGCAGTCTGCGATGGTCCTCTCGGGGATGAAAGCATTA  200

seq1  TCCGTTATTCCCATGGACGAGACTTTTAAAACCCAGTTGATTTTTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTATTCCCATGGACGAGACTTTTAAAACCCAGTTGATTTTTGTTCT  250

seq1  GAAGAAAGACACAAAAACCAATCTGCCCCTTGCCCCAAAGGCCAGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGACACAAAAACCAATCTGCCCCTTGCCCCAAAGGCCAGCTCTG  300

seq1  GGCTTTCAAGTTCAAACAGCAGCCATTCCAGTGCAGCTTCAAGTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAAGTTCAAACAGCAGCCATTCCAGTGCAGCTTCAAGTTTTCCT  350

seq1  TGGGGCCTTCAAAAAAAAAAGAAAAGAAAAGAAAGAAAAGAAAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTTCAAAAAAAAAAGAAAAGAAAAGAAAGAAAAGAAAAGAAAAA  400

seq1  AAGAAAGAAAGAGAGAGAGAAAGAAAAAAGAAAGGAACACTGCAGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAGAGAGAGAAAGAAAAAAGAAAGGAACACTGCAGAGAGT  450

seq1  TAAAAGACCCTGTTCAAAACAAGACTTTGAATATCAAGTGGACCAGCACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACCCTGTTCAAAACAAGACTTTGAATATCAAGTGGACCAGCACG  500

seq1  AGGAATGCAAACAGCACACTCACCTGGGCAAATTGAGAAGAGTTTAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCAAACAGCACACTCACCTGGGCAAATTGAGAAGAGTTTAATAG  550

seq1  AGACCATATACAAAGATGCAGGTCAGTTTATAAGACGATATAAAGCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATATACAAAGATGCAGGTCAGTTTATAAGACGATATAAAGCTCAT  600

seq1  CCTATGGCCAGCATCAGTAGGGGACCCTCCCAAAGGTGAGGGAACAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCCAGCATCAGTAGGGGACCCTCCCAAAGGTGAGGGAACAATTA  650

seq1  CAGGAACTCAGAAAAGACACCACAGAGAGGGTCCCAGCCAGAAAATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCAGAAAAGACACCACAGAGAGGGTCCCAGCCAGAAAATGTGG  700

seq1  CTTTGGGCAGGAGATGCACCCAAACGACAGGGGCTCAAAAAGGAAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGCAGGAGATGCACCCAAACGACAGGGGCTCAAAAAGGAAAAGGT  750

seq1  TATGGGGAGGGAGACACCCTGACTCTCTCTCCCTGTCCTCTAGGTACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGAGGGAGACACCCTGACTCTCTCTCCCTGTCCTCTAGGTACATC  800

seq1  TTGAGGACCTAGAACAACATCCTAGGAACCCCTGATGCAGGCTTTAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACCTAGAACAACATCCTAGGAACCCCTGATGCAGGCTTTAGGAT  850

seq1  CCAGCATCCCAAGACACTAAGCTGAGTAGATGAGGCACCAGGCAAAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCCAAGACACTAAGCTGAGTAGATGAGGCACCAGGCAAAGCCC  900

seq1  AGGTGCAAATGGGACATCTCCAGTACAGATGCACTGGGAGTCCACATTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAAATGGGACATCTCCAGTACAGATGCACTGGGAGTCCACATTCC  950

seq1  AATTAGACATCACCGGGTGAGTAGAGCCAGGGACTAGCAATTTTTCCAGG  1000
      |||||||||||| |||||||||||||||| |||||||||  |||| ||||
seq2  AATTAGACATCA-CGGGTGAGTAGAGCCA-GGACTAGCA--TTTTTCAGG  996

seq1  TTTATTATTCTTTTACAAATATCATCAACTATTTCCCTTCAAAAGGCAAA  1050
      |||||   |||||   | |||||||| |||||||||| |||||  || ||
seq2  TTTAT--ATCTTT---ACATATCATC-ACTATTTCCC-TCAAA--GC-AA  1036

seq1  GTTTACCCAGCAATTAGAATTTGATTTTAATTATGGGGTTCTTTTTGTCC  1100
      | ||| ||||||  ||||||||||||   | ||||||| || ||||||||
seq2  GGTTAACCAGCA--TAGAATTTGATT---AATATGGGG-TCCTTTTGTCC  1080

seq1  ACTGACACATTGCTGTTTCTGGCCTCATACATTCA  1135
      |||||| |||||||||   | | ||||||| ||||
seq2  ACTGAC-CATTGCTGT---TCGACTCATAC-TTCA  1110

seq1: chr2_144171497_144172221
seq2: B6Ng01-287M18.g_78_810 (reverse)

seq1  TTTTGGTATAGC-ATTGG-AAATGTAAATGAGCT-AAATACCT-AATAAA  46
      |||||||||||| ||||| ||||||||||||||| |||||||| ||||||
seq2  TTTTGGTATAGCAATTGGAAAATGTAAATGAGCTAAAATACCTAAATAAA  50

seq1  AAATGGAAAAAAAAA--GAAATTCTGCTTTTGATTGTAAGGAGACATCTT  94
      ||||| |||||||||   ||||||||||||||||||||||||||||||||
seq2  AAATGAAAAAAAAAAAGAAAATTCTGCTTTTGATTGTAAGGAGACATCTT  100

seq1  ATTTTACCTGCATCATTACACAGATGTTTAAGTTGAAAGTAGACTCTTTG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTGCATCATTACACAGATGTTTAAGTTGAAAGTAGACTCTTTG  150

seq1  GTGGCT-AATTTCCTTTTAGCTCCTTAG-AGACATCCCAGTGCACTGAGG  192
      |||||| |||||||| |||||||||||| |||||||||||||||||||||
seq2  GTGGCTAAATTTCCTCTTAGCTCCTTAGAAGACATCCCAGTGCACTGAGG  200

seq1  GTCCTGTTGATTCTGTTGAGAAGAAGGCTGCAGGTCTTACTCTTGTTTTC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTGATTCTGTTGAGAAGAAGGCTGCAGGTCTTACTCTTGTTTTC  250

seq1  CCAGTGTCCTTTTGCCCTTCTGGTTGGTTTTAAAGATGTTATCCTGAAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCCTTTTGCCCTTCTGGTTGGTTTTAAAGATGTTATCCTGAAAC  300

seq1  TTTCTTCCATTGCATAGTCACAGGTAAGGTGCCCACACAAGTGTGAACAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATTGCATAGTCACAGGTAAGGTGCCCACACAAGTGTGAACAA  350

seq1  TGCTAATGAAGCTCATTGCACACATACACACACACACACACACACACACA  392
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTAATGAAGCTCATCGCACACATACACACACACACACACACACACACA  400

seq1  CAAGCACACCCCTATAGGGGAACTAGTTGGAAAGATGAAGGCAAGGGAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACACCCCTATAGGGGAACTAGTTGGAAAGATGAAGGCAAGGGAGA  450

seq1  CAAGAGAGGGAACTAGAGAAATAGTCTAGAAATACATCCTATACACGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGGAACTAGAGAAATAGTCTAGAAATACATCCTATACACGTGT  500

seq1  GATGAAACCCACCACTATGTAAAATCAACGTAAGTTAAGAGCATATTGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACCCACCACTATGTAAAATCAACGTAAGTTAAGAGCATATTGTT  550

seq1  TAAGATGTGTCTTTAGTTTTCAACAGTAAAATGAGAAATATTACATGGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTGTCTTTAGTTTTCAACAGTAAAATGAGAAATATTACATGGAA  600

seq1  TTATTCCTTTAAATTTATGTAGCCTTGGCTGTCCTGGAACTCGCTCTGTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTTAAATTTATGTAGCCTTGGCTGTCCTGGAACTCGCTCTGTA  650

seq1  GATCAGGCTAACCTCAAACTTGTGGGGATCCACCTGCCTCTGCCTTTCAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCTAACCTCAAACTTGTGGGGATCCACCTGCCTCTGCCTTTCAA  700

seq1  AGGTTGGGACTAAATGCTCGTGTCACCACTGTC  725
      |||||||||||||||||||||||||||||||||
seq2  AGGTTGGGACTAAATGCTCGTGTCACCACTGTC  733