BAC Information

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BAC

Clone NameB6Ng01-288B06
Chromosome2 (Build37)
Map Location 16,647,444 - 16,843,522
singlet/doubletdoublet
Overlap genePlxdc2, 4930515L03Rik
Upstream geneLOC625457
Downstream geneLOC383665, Nebl, LOC100041319, LOC100041047
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288B06.bB6Ng01-288B06.g
ACCGA085835GA085836
length7011,118
definitionB6Ng01-288B06.b B6Ng01-288B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,647,444 - 16,648,144)(16,842,392 - 16,843,522)
sequence
gaattcttttatgatatttccaagaaaagcataagaattttgatctcatg
accagattccttgcaaccatacttaaacattcccgatttacagactctgt
tgggcagcacaagaagtctatacctgaggtatgtgcagggttttctttgg
catgcctccctgccaatttaatagatcaacgctggttattttacaaagat
gacgttttaatttattgtcttttctgaggagatattggtttcagtttgtt
tgagtgttatccctttaggtgcatgaattaatacccaataaaaggtgtca
ccaaggacttttttttttttacattttagtttggctttgagatactcata
attttgatgactcctgcatgttgtctacaaataaccatgtgaatatctta
ctgtattgtttgagaagtaatgaaaaattgaaaaccaaatggagaactta
gaatccaaatacatcaatgcagatagatgtttcagttcaacaacctttaa
cactccaatatcatcctgttatctgtggatccccaaagtcttagaaagca
gtgggaataaaggaggtttttttttctacagtatttatacaatgatgagg
gaaggaaaaatattggttaaattatgtgggagtagagaaatatgttctca
aaaaattattatatatatatatatatatatatatatatatatatatgtgt
g

gaattctaggattaaaggaatgaaccactatgaccacatgagctgtagat
ttttaaatgtttgagaaaagtatatatgaatagtcttacttgttagaagc
aaacattaaaacaggttactagtgttcttggtaataccctaagacagcaa
taacagaacccttctgttttaaagtaagactgggactctacttaagagtt
gtaatgcttgtttttgtttgtttgtttgttttaacttgaatactttttta
aacttaagaagatcttgaacttagtctaaccttctattaactggtaatta
attgcattttccataatcccgttctttaatttcttttacctttgaggatt
ctagacttgtaaaatatagaaaaagcatagaatgtcagaaaggctgtaca
actctataaattcactggaagtcaataaagtgtataattgtaaatatatc
aataaattttaatcatatgtaaattatacctcagtagagcctctggcaat
atttcaggtttttcaatgtggaaactttcttagtatgctattgttttttg
cacatgtgaaacatatttctaatagctgcattgaggtataacatttatct
tcaaaatcactcattgtgtgtgcacaggtcaataactttcagacttactg
tgtctatatgtttgtatagctacggaatccattcccaatttcagttaatg
aagaatgccacttagatttgaaattagtttgctatttcactgaattcttg
ctattatagtgaccaaatgcaagggttcattatacccctgtcttgcttac
atctattgttctgtaatcattcattaagtgatcttttaataaaaggatta
atgtctgagatagctcagtgttgagactgctatttggcttcttactattg
tcagatgggtgcctcatgagagtcatatgccctaataagttgactgtgga
tcttcatttaattcaacttgcagatttctctttgcttagaaaatgggtag
aaaaaaaaagaaattagggttattacaccttagatttcctttgaagggaa
gagaaatgagtgggcgagacagacagtttcctatttatgttctgctgatt
gtgaatctcaggaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16647444_16648144
seq2: B6Ng01-288B06.b_43_743

seq1  GAATTCTTTTATGATATTTCCAAGAAAAGCATAAGAATTTTGATCTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGATATTTCCAAGAAAAGCATAAGAATTTTGATCTCATG  50

seq1  ACCAGATTCCTTGCAACCATACTTAAACATTCCCGATTTACAGACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTCCTTGCAACCATACTTAAACATTCCCGATTTACAGACTCTGT  100

seq1  TGGGCAGCACAAGAAGTCTATACCTGAGGTATGTGCAGGGTTTTCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCACAAGAAGTCTATACCTGAGGTATGTGCAGGGTTTTCTTTGG  150

seq1  CATGCCTCCCTGCCAATTTAATAGATCAACGCTGGTTATTTTACAAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCCCTGCCAATTTAATAGATCAACGCTGGTTATTTTACAAAGAT  200

seq1  GACGTTTTAATTTATTGTCTTTTCTGAGGAGATATTGGTTTCAGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTTAATTTATTGTCTTTTCTGAGGAGATATTGGTTTCAGTTTGTT  250

seq1  TGAGTGTTATCCCTTTAGGTGCATGAATTAATACCCAATAAAAGGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTATCCCTTTAGGTGCATGAATTAATACCCAATAAAAGGTGTCA  300

seq1  CCAAGGACTTTTTTTTTTTTACATTTTAGTTTGGCTTTGAGATACTCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGACTTTTTTTTTTTTACATTTTAGTTTGGCTTTGAGATACTCATA  350

seq1  ATTTTGATGACTCCTGCATGTTGTCTACAAATAACCATGTGAATATCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGACTCCTGCATGTTGTCTACAAATAACCATGTGAATATCTTA  400

seq1  CTGTATTGTTTGAGAAGTAATGAAAAATTGAAAACCAAATGGAGAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTTTGAGAAGTAATGAAAAATTGAAAACCAAATGGAGAACTTA  450

seq1  GAATCCAAATACATCAATGCAGATAGATGTTTCAGTTCAACAACCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAATACATCAATGCAGATAGATGTTTCAGTTCAACAACCTTTAA  500

seq1  CACTCCAATATCATCCTGTTATCTGTGGATCCCCAAAGTCTTAGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAATATCATCCTGTTATCTGTGGATCCCCAAAGTCTTAGAAAGCA  550

seq1  GTGGGAATAAAGGAGGTTTTTTTTTTTACAGTATTTATACAATGATGAGG  600
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGGAATAAAGGAGGTTTTTTTTTCTACAGTATTTATACAATGATGAGG  600

seq1  GAAGGAAAAATATTGGTTAAATTATGTGGGAGTAGAGAAATATGTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAATATTGGTTAAATTATGTGGGAGTAGAGAAATATGTTCTCA  650

seq1  AAAAATTATTATATATATATATATATATATATATATATATATATATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTATATATATATATATATATATATATATATATATATATGTGT  700

seq1  G  701
      |
seq2  G  701


seq1: chr2_16842392_16843522
seq2: B6Ng01-288B06.g_72_1189 (reverse)

seq1  TTTGTTCCTTGAGGAATTCACAAACAAGCAAGAAACATAATAAGGAAAAC  50
      |||||||| ||||  |||||||| | ||||   |||||||  ||||||  
seq2  TTTGTTCC-TGAG--ATTCACAATC-AGCA--GAACATAAATAGGAAA--  42

seq1  CTGGTCTGTCTCGCCCACTCATTTTCTCTTCCCTTCAAAGGAAATCTAAG  100
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CT-GTCTGTCTCGCCCACTCA-TTTCTCTTCCCTTCAAAGGAAATCTAAG  90

seq1  GTGTAATAACCCTAATTTCTTTTTTTTTCTACCCATTTTCTAAGCAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTAATAACCCTAATTTCTTTTTTTTTCTACCCATTTTCTAAGCAAAG-  139

seq1  AGAAATCTTGCAAAGTTGAATTAAATGAAGATCCACAGTCAACTTATTAG  200
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAATC-TGC-AAGTTGAATTAAATGAAGATCCACAGTCAACTTATTAG  187

seq1  GGCATATGACTCTCATGAGGCACCCATCTGACAATAGTAAGAAGCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGACTCTCATGAGGCACCCATCTGACAATAGTAAGAAGCCAAAT  237

seq1  AGCAGTCTCAACACTGAGCTATCTCAGACATTAATCCTTTTATTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCAACACTGAGCTATCTCAGACATTAATCCTTTTATTAAAAGA  287

seq1  TCACTTAATGAATGATTACAGAACAATAGATGTAAGCAAGACAGGGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAATGAATGATTACAGAACAATAGATGTAAGCAAGACAGGGGTAT  337

seq1  AATGAACCCTTGCATTTGGTCACTATAATAGCAAGAATTCAGTGAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCCTTGCATTTGGTCACTATAATAGCAAGAATTCAGTGAAATAG  387

seq1  CAAACTAATTTCAAATCTAAGTGGCATTCTTCATTAACTGAAATTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATTTCAAATCTAAGTGGCATTCTTCATTAACTGAAATTGGGAA  437

seq1  TGGATTCCGTAGCTATACAAACATATAGACACAGTAAGTCTGAAAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCCGTAGCTATACAAACATATAGACACAGTAAGTCTGAAAGTTAT  487

seq1  TGACCTGTGCACACACAATGAGTGATTTTGAAGATAAATGTTATACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTGCACACACAATGAGTGATTTTGAAGATAAATGTTATACCTCA  537

seq1  ATGCAGCTATTAGAAATATGTTTCACATGTGCAAAAAACAATAGCATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTATTAGAAATATGTTTCACATGTGCAAAAAACAATAGCATACT  587

seq1  AAGAAAGTTTCCACATTGAAAAACCTGAAATATTGCCAGAGGCTCTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTTCCACATTGAAAAACCTGAAATATTGCCAGAGGCTCTACTG  637

seq1  AGGTATAATTTACATATGATTAAAATTTATTGATATATTTACAATTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAATTTACATATGATTAAAATTTATTGATATATTTACAATTATAC  687

seq1  ACTTTATTGACTTCCAGTGAATTTATAGAGTTGTACAGCCTTTCTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGACTTCCAGTGAATTTATAGAGTTGTACAGCCTTTCTGACAT  737

seq1  TCTATGCTTTTTCTATATTTTACAAGTCTAGAATCCTCAAAGGTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTTTTTCTATATTTTACAAGTCTAGAATCCTCAAAGGTAAAAGA  787

seq1  AATTAAAGAACGGGATTATGGAAAATGCAATTAATTACCAGTTAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGAACGGGATTATGGAAAATGCAATTAATTACCAGTTAATAGAA  837

seq1  GGTTAGACTAAGTTCAAGATCTTCTTAAGTTTAAAAAAGTATTCAAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGACTAAGTTCAAGATCTTCTTAAGTTTAAAAAAGTATTCAAGTTA  887

seq1  AAACAAACAAACAAACAAAAACAAGCATTACAACTCTTAAGTAGAGTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAAACAAGCATTACAACTCTTAAGTAGAGTCCC  937

seq1  AGTCTTACTTTAAAACAGAAGGGTTCTGTTATTGCTGTCTTAGGGTATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACTTTAAAACAGAAGGGTTCTGTTATTGCTGTCTTAGGGTATTA  987

seq1  CCAAGAACACTAGTAACCTGTTTTAATGTTTGCTTCTAACAAGTAAGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACACTAGTAACCTGTTTTAATGTTTGCTTCTAACAAGTAAGACT  1037

seq1  ATTCATATATACATTTCTCAAACATTTAAAAATCTACAGCTCATGTGGTC  1100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATACTTTTCTCAAACATTTAAAAATCTACAGCTCATGTGGTC  1087

seq1  ATAGTGGTGCACTCCTTTAATCCTAGAATTC  1131
      |||||||| || |||||||||||||||||||
seq2  ATAGTGGTTCATTCCTTTAATCCTAGAATTC  1118


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