BAC Information

Click to search

BAC

Clone NameB6Ng01-288H23
Chromosome2 (Build37)
Map Location 123,254,207 - 123,255,356
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288H23.bB6Ng01-288H23.g
ACCGA086143GA086144
length3491,155
definitionB6Ng01-288H23.b B6Ng01-288H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgtactggaaggtctaggcctaagagtgattgtcttttcatgtttatgag
cttttgttgtgcaaaccatgttccttgatttaaaactgcttgttaaataa
aattgtctacagccaattactggagggattagaggtaggtgggtttgggg
tgacctgggtggagaaagagaagggaaggagaaggaagaagaaggggaga
cagaggaagccaccataaagggagatgaactgtgagcacatggccaggag
aaacagcaaatatcttgggtatatccttgggtaggtagtcagccaggtct
tcagttataagactcatctaattgttacccattgtaattgtcaaagtct

gaattctctttcagttatctagtaataagggcagaggaccttccttgtta
ttccaaggatccagaatcacctgaatcttcatgatcctagaaagaagaga
atggattgtagtggggacgtttattccttggtttcctctgtatattgcca
acacatgaatatgtgtttgtgtttctcaccacaatttcagtgaagattcg
tccctacccttttgtaagcaccatcatctaaggagaacagttgcagacag
ggaggcagccattgactcctcactgcccttcagccttttccaaggactgt
ttggaagttgaggatggaagacaagaaaagtctgggaatagaagacaagt
tttacttcccagggggctgagaaggataatcagaatctctgaaaccatga
aatagatcaaatgaaaaggtggaaggaatggagccaatgagaggctaaat
gtcttctaccctggggagggggcatttccatagtttaacaagacaggaat
gaaaggaacagaggtgttcagaagcattgctgtaggcgtcttggagccaa
cactatcattatctctagattgcatccttcttaatgtgacaatggtctga
aattggattgcttaggctcacaactatacatacttatctaaattcctaac
gcatacataaacaaagtggtaattaatgtaccaaagcagcttaagtatat
atgtaaggaaaatctctaattcacgaataaattcagtagctgattattaa
tggaaacatcaatacgtacaagaatcctagagtgtcacagtcaaggggat
gatatgagttaacatgtgcattgtgccgataaagaagctgaggtctaata
ggttaatagacttgtctaaaggttattctcaaggttaaccttgagttcca
cagcatgctcatatgagtctgctgctcacaatatccacagatcagtctgt
agttgaatactcagggttatattttacgcacctccagacctatgggagct
atatgaaaactggtgaatgacaatttacttccaggacgaactggagaaag
ttaaattacaaggaaaaacacagtttgaaaccttaggtaggtgacctact
ggcaacggcaggaggtaccatgccagtcatctgcctgacactaaggtaat
ggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123254207_123255356
seq2: B6Ng01-288H23.g_67_1221 (reverse)

seq1  TTTCCATTGTAGCTTCATTTCCTAATGTCAGGGCAGATGGCT-GCAT-GT  48
      |||||||  || ||        || ||||| |||||||| || |||| ||
seq2  TTTCCAT--TACCT--------TAGTGTCA-GGCAGATGACTGGCATGGT  39

seq1  TCCTTCTGCCGTTGGCAG-GTGTCA-CTACCT-AGGTT--CAACTGTG-T  92
       ||| ||||||||| |||   |||| |||||| |||||   ||||||| |
seq2  ACCTCCTGCCGTTGCCAGTAGGTCACCTACCTAAGGTTTCAAACTGTGTT  89

seq1  TTTCCTTGTAATTTA--CTTCTCCCGTTCGT-CTTGAAGTAAA-TGTCAT  138
      |||||||||||||||   |||||| |||||| || |||||||| ||||||
seq2  TTTCCTTGTAATTTAACTTTCTCCAGTTCGTCCTGGAAGTAAATTGTCAT  139

seq1  TCA-CAGTTTTCATATAGCTCCCATAGGTCT-GAGGTGCGTAAAATATAA  186
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCACCAGTTTTCATATAGCTCCCATAGGTCTGGAGGTGCGTAAAATATAA  189

seq1  CCCTGAGTATTCAACTACAGACTGATCTGTGGATATTGTGAGCAGCAGAC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTATTCAACTACAGACTGATCTGTGGATATTGTGAGCAGCAGAC  239

seq1  TCATATGAGCATGCTGTGGAACTCAAGGTTAACCTTGAGAATAACC-TTA  285
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCATATGAGCATGCTGTGGAACTCAAGGTTAACCTTGAGAATAACCTTTA  289

seq1  GACAAGTCTATTAACCTATTAGACCTCAGCTTCTTTATCGGCACAATGCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCTATTAACCTATTAGACCTCAGCTTCTTTATCGGCACAATGCA  339

seq1  CATGTTAACTCATATCAT-CCCTTGACTGTGACACTCTAGGATTCTTGTA  384
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATGTTAACTCATATCATCCCCTTGACTGTGACACTCTAGGATTCTTGTA  389

seq1  CGTATTGATGTTTCCATTAATAATCAGCTACTGAATTTATTCGTGAATTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTGATGTTTCCATTAATAATCAGCTACTGAATTTATTCGTGAATTA  439

seq1  GAGATTTTCCTTACATATATACTTAAGCTGCTTTGGTACATTAATTACCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCCTTACATATATACTTAAGCTGCTTTGGTACATTAATTACCA  489

seq1  CTTTGTTTATGTATGCGTTAGGAATTTAGATAAGTATGTATAGTTGTGAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTATGTATGCGTTAGGAATTTAGATAAGTATGTATAGTTGTGAG  539

seq1  CCTAAGCAATCCAATTTCAGACCATTGTCACATTAAGAAGGATGCAATCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCAATCCAATTTCAGACCATTGTCACATTAAGAAGGATGCAATCT  589

seq1  AGAGATAATGATAGTGTTGGCTCCAAGACGCCTACAGCAATGCTTCTGAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAATGATAGTGTTGGCTCCAAGACGCCTACAGCAATGCTTCTGAA  639

seq1  CACCTCTGTTCCTTTCATTCCTGTCTTGTTAAACTATGGAAATGCCCCCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGTTCCTTTCATTCCTGTCTTGTTAAACTATGGAAATGCCCCCT  689

seq1  CCCCAGGGTAGAAGACATTTAGCCTCTCATTGGCTCCATTCCTTCCACCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGTAGAAGACATTTAGCCTCTCATTGGCTCCATTCCTTCCACCT  739

seq1  TTTCATTTGATCTATTTCATGGTTTCAGAGATTCTGATTATCCTTCTCAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTGATCTATTTCATGGTTTCAGAGATTCTGATTATCCTTCTCAG  789

seq1  CCCCCTGGGAAGTAAAACTTGTCTTCTATTCCCAGACTTTTCTTGTCTTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGGAAGTAAAACTTGTCTTCTATTCCCAGACTTTTCTTGTCTTC  839

seq1  CATCCTCAACTTCCAAACAGTCCTTGGAAAAGGCTGAAGGGCAGTGAGGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAACTTCCAAACAGTCCTTGGAAAAGGCTGAAGGGCAGTGAGGA  889

seq1  GTCAATGGCTGCCTCCCTGTCTGCAACTGTTCTCCTTAGATGATGGTGCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGCTGCCTCCCTGTCTGCAACTGTTCTCCTTAGATGATGGTGCT  939

seq1  TACAAAAGGGTAGGGACGAATCTTCACTGAAATTGTGGTGAGAAACACAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGGTAGGGACGAATCTTCACTGAAATTGTGGTGAGAAACACAA  989

seq1  ACACATATTCATGTGTTGGCAATATACAGAGGAAACCAAGGAATAAACGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCATGTGTTGGCAATATACAGAGGAAACCAAGGAATAAACGT  1039

seq1  CCCCACTACAATCCATTCTCTTCTTTCTAGGATCATGAAGATTCAGGTGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTACAATCCATTCTCTTCTTTCTAGGATCATGAAGATTCAGGTGA  1089

seq1  TTCTGGATCCTTGGAATAACAAGGAAGGTCCTCTGCCCTTATTACTAGAT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATCCTTGGAATAACAAGGAAGGTCCTCTGCCCTTATTACTAGAT  1139

seq1  AACTGAAAGAGAATTC  1150
      ||||||||||||||||
seq2  AACTGAAAGAGAATTC  1155


| Home | SequenceCutter | Blast | Download |