BAC Information

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BAC

Clone NameB6Ng01-289D23
Chromosome2 (Build37)
Map Location 26,463,286 - 26,634,141
singlet/doubletdoublet
Overlap geneB230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582
Upstream geneB230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2
Downstream geneAbo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289D23.bB6Ng01-289D23.g
ACCGA086702GA086703
length1,084294
definitionB6Ng01-289D23.b B6Ng01-289D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,633,121 - 26,634,141)(26,463,286 - 26,463,579)
sequence
gaattctataaaatcattaattaatctaaacagaattattacatgaaagt
acatctttatattgattctgcaggaaatctgcccaacagcatgggttaaa
acccaggaaacagtaggttatgccagatgtgtgagggatacagcaatggc
atgcacatcagaagcaagaagcaatcctgggataaagttcctgggatcta
tgcctattcagagcacacacatcacagctatgcaaaattatgagccatct
ccaggaagctcacttgcttgccacagcctttccttcattgctctcacaac
ttagttggaacgtgggcacaaagaattactgatgtctacaattcccctgc
acacttaactccctgggaagcctggctggctttattccatcagtagagca
tcatggggtttagacagtggacaggatggaccccattcagagcatctcct
gttggaggagtctcaggtcaataatttgtcccttcatggtgtttgcccta
gctgagaagaaagaagagattcatataaacagatggtatttcacaggtaa
ggcagtggcattaagttcaggggctgtggcaattggtaggagttcttacc
aaagccaaatggctaccaaatttgggaaaatttacatgatggtaagaaaa
acatgatgtctatatagataaatcaaatgttgtttaaaaccaatgttaat
accctcacaaactgtacaatccattgaacaattacttggttcaataatcc
cttatcttttctagtccccacccctctgtcttatgttgtgttatctctcc
ggttttgttgtggtacatctctgacttgtgttgtgttttattttgaagct
tccaccccacccaaaattttcactacaaataacattagagacagtcactc
caatgacacccctcctttataaaaagaaaaggaggaactgtgggacaatg
gccatgccaggaaacttggtaagatagagtgggtctgagacctagaaaat
cagtgggtacacactgagatgtatgtgtatccctgctctcaacatgggtc
agttcacatagtcaaaacagagtttttcatgcta
ttgttgtgctcctgaactattgggtgggggtaggggtacatgtaggggtg
ctgtgaccccaccttggagagagaagaggcaagactgaagcctggggtgg
gacccgagacagagtaggagtgccctctgtgagtcttattctcactggtg
ggacactctgggggttttgactccttaaggggaactcagagtagaggcaa
ctggaagataaagaaaaggaggaggaagaggagaaggaggaggataaaga
agaaaggaaggaggagcagagtggggagaaggagtgggaaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_26633121_26634141
seq2: B6Ng01-289D23.b_112_1128 (reverse)

seq1  TAGCATGAAAAACTCTGTTTTGGACTATGTGACCTGACCAATGTGAGGAG  50
      ||||||||||||||||||||| |||||||||| |||||| ||||   |||
seq2  TAGCATGAAAAACTCTGTTTT-GACTATGTGAACTGACCCATGTTGAGAG  49

seq1  CAGGGATACACATACCATCTCAGGTGTGTACCCACTGATTTTCTAAGGTC  100
      |||||||||||||| ||||||| ||||||||||||||||||||| |||||
seq2  CAGGGATACACATA-CATCTCA-GTGTGTACCCACTGATTTTCT-AGGTC  96

seq1  TCAGACCCACTCTATCTTACCAAGTTTCCTGGCATGGCCCATTGTCCCAC  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGACCCACTCTATCTTACCAAGTTTCCTGGCATGG-CCATTGTCCCAC  145

seq1  AGTTCCTCCTTTTCTTTTTATAAAGGAGGGGTGTCATTGGAGTGACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCCTTTTCTTTTTATAAAGGAGGGGTGTCATTGGAGTGACTGTC  195

seq1  TCTAATGTTATTTGTAGTGAAAATTTTGGGTGGGGTGGAAGCTTCAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTATTTGTAGTGAAAATTTTGGGTGGGGTGGAAGCTTCAAAAT  245

seq1  AAAACACAACACAAGTCAGAGATGTACCACAACAAAACCGGAGAGATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAACACAAGTCAGAGATGTACCACAACAAAACCGGAGAGATAAC  295

seq1  ACAACATAAGACAGAGGGGTGGGGACTAG-AAAGATAAGGGATTATTGAA  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAACATAAGACAGAGGGGTGGGGACTAGAAAAGATAAGGGATTATTGAA  345

seq1  CCAAGTAATTGTTCAATGGATTGTACAGTTTGTGAGGGTATTAACATTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAATTGTTCAATGGATTGTACAGTTTGTGAGGGTATTAACATTGG  395

seq1  TTTTAAACAACATTTGATTTATCTATATAGACATCATGTTTTTCTTACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAACATTTGATTTATCTATATAGACATCATGTTTTTCTTACCA  445

seq1  TCATGTAAATTTTCCCAAATTTGGTAGCCATTTGGCTTTGGTAAGAACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAATTTTCCCAAATTTGGTAGCCATTTGGCTTTGGTAAGAACTC  495

seq1  CTACCAATTGCCACAGCCCCTGAACTTAATGCCACTGCCTTACCTGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATTGCCACAGCCCCTGAACTTAATGCCACTGCCTTACCTGTGAA  545

seq1  ATACCATCTGTTTATATGAATCTCTTCTTTCTTCTCAGCTAGGGCAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATCTGTTTATATGAATCTCTTCTTTCTTCTCAGCTAGGGCAAACA  595

seq1  CCATGAAGGGACAAATTATTGACCTGAGACTCCTCCAACAGGAGATGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGGGACAAATTATTGACCTGAGACTCCTCCAACAGGAGATGCTC  645

seq1  TGAATGGGGTCCATCCTGTCCACTGTCTAAACCCCATGATGCTCTACTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGGTCCATCCTGTCCACTGTCTAAACCCCATGATGCTCTACTGA  695

seq1  TGGAATAAAGCCAGCCAGGCTTCCCAGGGAGTTAAGTGTGCAGGGGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAGCCAGCCAGGCTTCCCAGGGAGTTAAGTGTGCAGGGGAATT  745

seq1  GTAGACATCAGTAATTCTTTGTGCCCACGTTCCAACTAAGTTGTGAGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATCAGTAATTCTTTGTGCCCACGTTCCAACTAAGTTGTGAGAGC  795

seq1  AATGAAGGAAAGGCTGTGGCAAGCAAGTGAGCTTCCTGGAGATGGCTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGAAAGGCTGTGGCAAGCAAGTGAGCTTCCTGGAGATGGCTCAT  845

seq1  AATTTTGCATAGCTGTGATGTGTGTGCTCTGAATAGGCATAGATCCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCATAGCTGTGATGTGTGTGCTCTGAATAGGCATAGATCCCAGG  895

seq1  AACTTTATCCCAGGATTGCTTCTTGCTTCTGATGTGCATGCCATTGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATCCCAGGATTGCTTCTTGCTTCTGATGTGCATGCCATTGCTGT  945

seq1  ATCCCTCACACATCTGGCATAACCTACTGTTTCCTGGGTTTTAACCCATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCACACATCTGGCATAACCTACTGTTTCCTGGGTTTTAACCCATG  995

seq1  CTGTTGGGCAGATTTCCTGCAG  1021
      ||||||||||||||||||||||
seq2  CTGTTGGGCAGATTTCCTGCAG  1017

seq1: chr2_26463286_26463579
seq2: B6Ng01-289D23.g_79_372

seq1  TTGTTGTGCTCCTGAACTATTGGGTGGGGGTAGGGGTACATGTAGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGCTCCTGAACTATTGGGTGGGGGTAGGGGTACATGTAGGGGTG  50

seq1  CTGTGACCCCACCTTGGAGAGAGAAGAGGCAAGACTGAAGCCTGGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCCACCTTGGAGAGAGAAGAGGCAAGACTGAAGCCTGGGGTGG  100

seq1  GACCCGAGACAGAGTAGGAGTGCCCTCTGTGAGTCTTATTCTCACTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGAGACAGAGTAGGAGTGCCCTCTGTGAGTCTTATTCTCACTGGTG  150

seq1  GGACACTCTGGGGGTTTTGACTCCTTAAGGGGAACTCAGAGTAGAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCTGGGGGTTTTGACTCCTTAAGGGGAACTCAGAGTAGAGGCAA  200

seq1  CTGGAAGATAAAGAAAAGGAGGAGGAAGAGGAGAAGGAGGAGGATAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGATAAAGAAAAGGAGGAGGAAGAGGAGAAGGAGGAGGATAAAGA  250

seq1  AGAAAGGAAGGAGGAGCAGAGTGGGGAGAAGGAGTGGGAAGGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAAGGAGGAGCAGAGTGGGGAGAAGGAGTGGGAAGGAC  294