BAC Information

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BAC

Clone NameB6Ng01-289F03
Chromosome2 (Build37)
Map Location 138,555,687 - 138,681,247
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F03.bB6Ng01-289F03.g
ACCGA086757GA086758
length1,119881
definitionB6Ng01-289F03.b B6Ng01-289F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,555,687 - 138,556,808)(138,680,371 - 138,681,247)
sequence
gaattcacttacaaaatgcagtctttttgtttataacatataaaagaacc
ggggcagaagtgctgctagcaaccatgggcaaaaaacatatcaagaggca
aaagaagcacacagactacgtgtaaagtgcagaaggaataatttaagaag
aaccatcaaccccacacttatgtttactggaaaaaaaaggaaattgtgga
tatacatgtacacagatctagaggtctagaatactcaatgcagatatgtt
ttttgaatgcttctgctttctgatttctgtatactaaaatatatctgtat
ttttaagttggtaatttattttttaggtttatgcatggtttgcctgcatg
tatgtctgcttaccatgttcatgcttagtgctcagagcatctagaagagg
gcgatggattcccaggaactggagtacatacttcaaccaaatccaggtcc
ttggtaaaaacaaccagtcctcttaaacctgagccatctctctagacctc
caaatgcagaaaggagtagatgattgttttgcaaacattctaaaagtgag
ccacagtcacaactgcaacaatcttacaagacgaactgttgtttctttaa
atacctgaaaagagtatagaaaaccttctcttgcatccaggtgtcacatg
ttcctctctctttatcttgtcagaagggaaacaggaaatagctttgaaga
cgatgtgtagtgttcccctgcctagtttctttcagtcaactgaggaatga
agagctggtatctgttgctgcaagtttggacttttgtgcattccaaggct
aattgattctacttctgctttgtatacaaacctctcccacttgcatcttc
aattttcatttcaaatatcctgcatttaatccagaatcaatttgttgctt
aaaattttgtatcacacaaacaaaaatggattaaaacatagcagaccaga
accttgctagatatataacaagtacaacattttgcatgaactattttctc
ttgtgatggagtgtgtacatggtctcttactgtgtactcctctggtgttc
acagcagacaggatacgaagcaacatgctatctaggctttattttcaggt
aatgggaacatgttttctt

gaattcattataagcactgaatggtatattttaatcaggtaaattttata
gtgtgtgaattattcaccaataaaagtaattaaatgaaagaaagagggaa
cctaatttaattcttgacagtcttatgaaacagctacagggcatctggtc
attatgaacaaattcagtcatttttaattactgaacagtaaaaaagttga
aaataaaactcatattcactcatgtaagtttatacagcatccaaggaggt
ttgcagaagggattacatttacatttgctggttaattctagtgtgacatc
tagtatttgagctccagccctagaatattaaattatatttacatttttga
aagggttagaaaattccaaaagataacaattattttgacaagtagaatat
gtgcacaaaggtcatttagattttgggctttcaaagtaagaatttattgt
ttttttcttttatggaaaatgatttctcacataatataccctgattaaaa
ccgtcccttcatagttctttcccacatccctgcccatccagatccacccc
ttctatgtctctattaaaaaacaaacaaaatattctacgggataatattg
aaataaaacaaggcaaaacaaaaactaacacatcagaattgggcaaaaga
aacaagcagaaaagatcccaagaggaggcacaagaaacagagacccactc
attcacaaactcaaggatttcaaaaatacactaaactggaagccaatgac
atatgcacaaatgatgtgtagtataaaaagacggaatatatatatatata
tatatatatatatatatatatatgtatatatgtatatagagatatatata
tatatatacatatatagatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138555687_138556808
seq2: B6Ng01-289F03.b_45_1163

seq1  GAATTCACTTACAAAATGCAGTCTTTTTGTTTATAACATATAAAAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACAAAATGCAGTCTTTTTGTTTATAACATATAAAAGAACC  50

seq1  GGGGCAGAAGTGCTGCTAGCAACCATGGGCAAAAAACATATCAAGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGTGCTGCTAGCAACCATGGGCAAAAAACATATCAAGAGGCA  100

seq1  AAAGAAGCACACAGACTACGTGTAAAGTGCAGAAGGAATAATTTAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCACACAGACTACGTGTAAAGTGCAGAAGGAATAATTTAAGAAG  150

seq1  AACCATCAACCCCACACTTATGTTTACTGGAAAAAAAAGGAAATTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAACCCCACACTTATGTTTACTGGAAAAAAAAGGAAATTGTGGA  200

seq1  TATACATGTACACAGATCTAGAGGTCTAGAATACTCAATGCAGATATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTACACAGATCTAGAGGTCTAGAATACTCAATGCAGATATGTT  250

seq1  TTTTGAATGCTTCTGCTTTCTGATTTCTGTATACTAAAATATATCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGCTTCTGCTTTCTGATTTCTGTATACTAAAATATATCTGTAT  300

seq1  TTTTAAGTTGGTAATTTATTTTTTAGGTTTATGCATGGTTTGCCTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTGGTAATTTATTTTTTAGGTTTATGCATGGTTTGCCTGCATG  350

seq1  TATGTCTGCTTACCATGTTCATGCTTAGTGCTCAGAGCATCTAGAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGCTTACCATGTTCATGCTTAGTGCTCAGAGCATCTAGAAGAGG  400

seq1  GCGATGGATTCCCAGGAACTGGAGTACATACTTCAACCAAATCCAGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGGATTCCCAGGAACTGGAGTACATACTTCAACCAAATCCAGGTCC  450

seq1  TTGGTAAAAACAACCAGTCCTCTTAAACCTGAGCCATCTCTCTAGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAAACAACCAGTCCTCTTAAACCTGAGCCATCTCTCTAGACCTC  500

seq1  CAAATGCAGAAAGGAGTAGATGATTGTTTTGCAAACATTCTAAAAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGAAAGGAGTAGATGATTGTTTTGCAAACATTCTAAAAGTGAG  550

seq1  CCACAGTCACAACTGCAACAATCTTACAAGACGAACTGTTGTTTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCACAACTGCAACAATCTTACAAGACGAACTGTTGTTTCTTTAA  600

seq1  ATACCTGAAAAGAGTATAGAAAACCTTCTCTTGCATCCAGGTGTCACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAAAAGAGTATAGAAAACCTTCTCTTGCATCCAGGTGTCACATG  650

seq1  TTCCTCTCTCTTTATCTTGTCAGAAGGGAAACAGGAAATAGCTTTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTCTTTATCTTGTCAGAAGGGAAACAGGAAATAGCTTTGAAGA  700

seq1  CGATGTGTAGTGTTCCCCTGCCTAGTTTCTTTCAGTCAACTGAGGAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTGTAGTGTTCCCCTGCCTAGTTTCTTTCAGTCAACTGAGGAATGA  750

seq1  AGAGCTGGTATCTGTTGCTGCAAGTTTGGACTTTTGTGCATTCCAAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTATCTGTTGCTGCAAGTTTGGACTTTTGTGCATTCCAAGGCT  800

seq1  AATTGATTCTACTTCTGCTTTGTATACAAACCTCTCCCACTTGCATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTCTACTTCTGCTTTGTATACAAACCTCTCCCACTTGCATCTTC  850

seq1  AATTTTCATTTCAAATATCCTGCATTTAATCCAGAATCAATTTGTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCATTTCAAATATCCTGCATTTAATCCAGAATCAATTTGTTGCTT  900

seq1  AAAATTTTGTATCACACAAACAAAAATGGATTAAAACATAGCAGACCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTGTATCACACAAACAAAAATGGATTAAAACATAGCAGACCAGA  950

seq1  ACCTTGCTAGATATATAACAAGTACAACATTTTGCATGAACTA-TTTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTTGCTAGATATATAACAAGTACAACATTTTGCATGAACTATTTTCTC  1000

seq1  TTGTGATGGAGTGTGGTACATGGTCTCTTACTGTTGTACTCCTCTGGGTG  1049
      |||||||||||||| |||||||||||||||||| ||||||||||| ||||
seq2  TTGTGATGGAGTGT-GTACATGGTCTCTTACTG-TGTACTCCTCT-GGTG  1047

seq1  TTCACAGCAGACAGGATACCGAAGCAACATGCTATCTAGGGCTTTATTTT  1099
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TTCACAGCAGACAGGATA-CGAAGCAACATGCTATCTA-GGCTTTATTTT  1095

seq1  CAGTTAAT-GGAACATGTTTTCTT  1122
      ||| |||| |||||||||||||||
seq2  CAGGTAATGGGAACATGTTTTCTT  1119


seq1: chr2_138680371_138681247
seq2: B6Ng01-289F03.g_68_948 (reverse)

seq1  ATATATATATATATACATATATATATATACATATATATA----TATATAC  46
      ||||||||||||||  |||||| |||||| |||||||||    |||||||
seq2  ATATATATATATATCTATATATGTATATATATATATATATCTCTATATAC  50

seq1  ATATATACATATATATATATATATATATATATATATATATATATATTCCG  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATATATATATATATATATATATATATATATATATATATTCCG  100

seq1  TCTTTTTATACTACACATCATTTGTGCATATGTCATTGGCTTCCAGTTTA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATACTACACATCATTTGTGCATATGTCATTGGCTTCCAGTTTA  150

seq1  GTGTATTTTTGAAATCCTTGAGTTTGTGAATGAGTGGGTCTCTGTTTCTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTTTGAAATCCTTGAGTTTGTGAATGAGTGGGTCTCTGTTTCTT  200

seq1  GTGCCTCCTCTTGGGATCTTTTCTGCTTGTTTCTTTTGCCCAATTCTGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCTCTTGGGATCTTTTCTGCTTGTTTCTTTTGCCCAATTCTGAT  250

seq1  GTGTTAGTTTTTGTTTTGCCTTGTTTTATTTCAATATTATCCCGTAGAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTTTTTGTTTTGCCTTGTTTTATTTCAATATTATCCCGTAGAAT  300

seq1  ATTTTGTTTGTTTTTTAATAGAGACATAGAAGGGGTGGATCTGGATGGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTGTTTTTTAATAGAGACATAGAAGGGGTGGATCTGGATGGGC  350

seq1  AGGGATGTGGGAAAGAACTATGAAGGGACGGTTTTAATCAGGGTATATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGGGAAAGAACTATGAAGGGACGGTTTTAATCAGGGTATATTA  400

seq1  TGTGAGAAATCATTTTCCATAAAAGAAAAAAACAATAAATTCTTACTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAATCATTTTCCATAAAAGAAAAAAACAATAAATTCTTACTTTG  450

seq1  AAAGCCCAAAATCTAAATGACCTTTGTGCACATATTCTACTTGTCAAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAAAATCTAAATGACCTTTGTGCACATATTCTACTTGTCAAAAT  500

seq1  AATTGTTATCTTTTGGAATTTTCTAACCCTTTCAAAAATGTAAATATAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTATCTTTTGGAATTTTCTAACCCTTTCAAAAATGTAAATATAAT  550

seq1  TTAATATTCTAGGGCTGGAGCTCAAATACTAGATGTCACACTAGAATTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCTAGGGCTGGAGCTCAAATACTAGATGTCACACTAGAATTAA  600

seq1  CCAGCAAATGTAAATGTAATCCCTTCTGCAAACCTCCTTGGATGCTGTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATGTAAATGTAATCCCTTCTGCAAACCTCCTTGGATGCTGTAT  650

seq1  AAACTTACATGAGTGAATATGAGTTTTATTTTCAACTTTTTTACTGTTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACATGAGTGAATATGAGTTTTATTTTCAACTTTTTTACTGTTCA  700

seq1  GTAATTAAAAATGACTGAATTTGTTCATAATGACCAGATGCCCTGTAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAAAATGACTGAATTTGTTCATAATGACCAGATGCCCTGTAGCT  750

seq1  GTTTCATAAGACTGTCAAGAATTAAATTAGGTTCCCTCTTTCTTTCATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAAGACTGTCAAGAATTAAATTAGGTTCCCTCTTTCTTTCATTT  800

seq1  AATTACTTTTATTGGTGAATAATTCACACACTATAAAATTTACCTGATTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTTTATTGGTGAATAATTCACACACTATAAAATTTACCTGATTA  850

seq1  AAATATACCATTCAGTGCTTATAATGAATTC  877
      |||||||||||||||||||||||||||||||
seq2  AAATATACCATTCAGTGCTTATAATGAATTC  881


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