BAC Information

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BAC

Clone NameB6Ng01-289F18
Chromosome2 (Build37)
Map Location 154,740,437 - 154,918,444
singlet/doubletdoublet
Overlap genea, Ahcy
Upstream geneRya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F18.bB6Ng01-289F18.g
ACCGA086785GA086786
length1,0541,093
definitionB6Ng01-289F18.b B6Ng01-289F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,740,437 - 154,741,489)(154,917,349 - 154,918,444)
sequence
gaattcttctaaaaaaaaataataataacctttccattgttttactgatt
ttgagaattctccctttttcattccttgggcttccctttctcctataact
tcagtaggacaacattttttttttcgccactgaacttctatagcacctta
tttatgcttcttttatcatttgtcatgatgtctttagcatcacagccccc
ccccctttatatagaaacttaaggtctgacctaattcacaagccataaac
atctataatgcacattttttatcatcttaaagttacgttttataatattt
aaagactcatttttaaaaagatgtcgtgttattttcatttttgtgcatga
gtccttgtctgcagttgttgtgaaccagctgtgaactactgggtgggcac
tgggtcctgagctctgatgatctctataagagcagggtggctcttaacca
atgagctatttctctggcctctataaggttaattttgattaaccttggtt
tttatctgtgtgaatattttgttatctgaactaagtctgtctctccagaa
aggtttgttatttgctcttgtaaaatgtcttcatatacagacagagatag
caacattgccctcccctgttgtttttttcaagacagattttctctgataa
tccctggctgccctgacactcactctatagaccatgctgacctcgaactc
agagcctgcctctgcctcctaaatgctgggattaaaggcatcaccatcca
atgtccaggctatggagacatgttcttaagggaggcattgctttcctgta
gagcaagaatatgagacttgtgtccttctcctgtgtgtttgatggtagaa
aaaaaatctagttaattctctgaccaaatgtccatgttctcatgttcctc
ctgtgcatccatcaatttcatgtctcattctctgtccctgagttttgttg
tttgtttgcttgattgaatatgtgtgtgtgtatatatatatatatatata
tatatatatatatacatacctccgacaactctcacaacttcaggcatcag
atcc
gaattctctatgtagaccaggttggccctgaactgtcagagatccttcag
ccgctgccttccaagtgctgggattaaaggaatacaccagcacacctggc
tcaaatgcttcttatctaggaaatgtgtttttaaaagatcacagtacatg
gcttggatggctttgaactcactaagtagcccaggctggactcaaattct
taattctccttcctcagcatccaaaatactggcgttacaggtaagtgcca
ccatgcctatttgaaacattactttctttttttttttttttttaaagatt
tatttatttattatatgtaagtacactgtagctgtcttcagacactccag
aagagggagtcagatctcgttacggatggttgtgagccaccatgtggttg
ctgggatttgaactcctgaccttcggaagagcagtcgggtgctcttaccc
gctgagccatctcaccagcccgaaacattactttcttaatcctcttcatt
tttcttttcttttctgcttcgtgtactgagtctaattttgctgaccttca
agcactgagctaagtgatgggcagagaacaatgttagtcatggaaaattt
tttactaggcagttggagtcaaagtggggagacatctgagaaaatctcct
ttctttgaaactggatctcggatagcgcatgctgctctggaagtagacac
agagagacaagagtgaccctgaactccttattctctttgctggcttggag
attttctttccttgatacaaaatagtagaaggctgctgaggccctctctt
ctgcttctggacactgtcctaaagataagatagttcagtttcagtagctg
tctgctgagcttgtgagaagctagtctgatggcccagctaatgccttggt
gatagcagaatatggagaaagaacctgggtcgtggtggaagctacagatc
tgctactaaattaatggacccggaacctgccaagtactgctcttgtaaat
caggattaaacgtccttccaatttctggagcctctgcagctggacttaga
caatttgtagcaaacttcttggataagttgtgggagtaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154740437_154741489
seq2: B6Ng01-289F18.b_46_1099

seq1  GAATTCTTCTAAAAAAAAATAATAATAACCTTTCCATTGTTTTACTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAAAAAAAATAATAATAACCTTTCCATTGTTTTACTGATT  50

seq1  TTGAGAATTCTCCCTTTTTCATTCCTTGGGCTTCCCTTTCTCCTATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTCTCCCTTTTTCATTCCTTGGGCTTCCCTTTCTCCTATAACT  100

seq1  TCAGTAGGACAACATTTTTTTTTTCGCCACTGAACTTCTATAGCACCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGACAACATTTTTTTTTTCGCCACTGAACTTCTATAGCACCTTA  150

seq1  TTTATGCTTCTTTTATCATTTGTCATGATGTCTTTAGCATCACAGCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTCTTTTATCATTTGTCATGATGTCTTTAGCATCACAGCCCCC  200

seq1  CCCCCTTTATATAGAAACTTAAGGTCTGACCTAATTCACAAGCCATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTATATAGAAACTTAAGGTCTGACCTAATTCACAAGCCATAAAC  250

seq1  ATCTATAATGCACATTTTTTATCATCTTAAAGTTACGTTTTATAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGCACATTTTTTATCATCTTAAAGTTACGTTTTATAATATTT  300

seq1  AAAGACTCATTTTTAAAAAGATGTCGTGTTATTTTCATTTTTGTGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCATTTTTAAAAAGATGTCGTGTTATTTTCATTTTTGTGCATGA  350

seq1  GTCCTTGTCTGCAGTTGTTGTGAACCAGCTGTGAACTACTGGGTGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCTGCAGTTGTTGTGAACCAGCTGTGAACTACTGGGTGGGCAC  400

seq1  TGGGTCCTGAGCTCTGATGATCTCTATAAGAGCAGGGTGGCTCTTAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGAGCTCTGATGATCTCTATAAGAGCAGGGTGGCTCTTAACCA  450

seq1  ATGAGCTATTTCTCTGGCCTCTATAAGGTTAATTTTGATTAACCTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATTTCTCTGGCCTCTATAAGGTTAATTTTGATTAACCTTGGTT  500

seq1  TTTATCTGTGTGAATATTTTGTTATCTGAACTAAGTCTGTCTCTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTGTGAATATTTTGTTATCTGAACTAAGTCTGTCTCTCCAGAA  550

seq1  AGGTTTGTTATTTGCTCTTGTAAAATGTCTTCATATACAGACAGAGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTATTTGCTCTTGTAAAATGTCTTCATATACAGACAGAGATAG  600

seq1  CAACATTGCCCTCCCCTGTTGTTTTTTTCAAGACAGATTTTCTCTGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGCCCTCCCCTGTTGTTTTTTTCAAGACAGATTTTCTCTGATAA  650

seq1  TCCCTGGCTGCCCTGACACTCACTCTATAGACCATGCTGACCTCGAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGCCCTGACACTCACTCTATAGACCATGCTGACCTCGAACTC  700

seq1  AGAGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGCATCACCATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCCTCTGCCTCCTAAATGCTGGGATTAAAGGCATCACCATCCA  750

seq1  ATGTCCAGGCTATGGAGACATGTTCTTAAGGGAGGCATTGCTTTCCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGCTATGGAGACATGTTCTTAAGGGAGGCATTGCTTTCCTGTA  800

seq1  GAGCAAGAATATGAGACTTGTGTCCTTCTCCTGTGTGTTTGATGGTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAATATGAGACTTGTGTCCTTCTCCTGTGTGTTTGATGGTAGAA  850

seq1  AAAAAATCTAGTTAATTCTCTGACCAAATGTCCATGTTCTCATGTTCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTAGTTAATTCTCTGACCAAATGTCCATGTTCTCATGTTCCTC  900

seq1  CTGTGCATCCATCAATTTCATGTCTCATTCTCTGTCCCTGAGTTTTGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCCATCAATTTCATGTCTCATTCTCTGTCCCTGAGTTTTGTTG  950

seq1  TTTGTTTGCTTGATTGAATATGTGTGTGTGTATATATATATATATATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGCTTGATTGAATATGTGTGTGTGTATATATATATATATATATA  1000

seq1  TATATATATATATATATATACTACGACAA--TTTAAAAATTCAGGCATCA  1048
      |||||||||||||| |||  || ||||||   | | || |||||||||||
seq2  TATATATATATATACATA-CCTCCGACAACTCTCACAACTTCAGGCATCA  1049

seq1  GATCC  1053
      |||||
seq2  GATCC  1054

seq1: chr2_154917349_154918444
seq2: B6Ng01-289F18.g_67_1159 (reverse)

seq1  GACCTTAACCTCCACAACTCTACTCAGAAGTTTGCTACAAATTGTCTAAA  50
      |||||| ||  ||||||||   |  |||||||||||||||||||||| ||
seq2  GACCTT-ACTCCCACAACTTATCCAAGAAGTTTGCTACAAATTGTCT-AA  48

seq1  GTCCAGCTGCAGAGGGCTCAGAAA-TGGAAGGACGTTTTAATCCCTGATT  99
      |||||||||||||||   |||||| |||||||||| |||||| |||||||
seq2  GTCCAGCTGCAGAGGCTCCAGAAATTGGAAGGACG-TTTAAT-CCTGATT  96

seq1  TACAAGAGCCAGTACTTGGCAGGTTCCGGGTCCATTAATTTAGTAGCAGA  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAG-CAGTACTTGGCAGGTTCCGGGTCCATTAATTTAGTAGCAGA  145

seq1  TCTGTAGCTTCCACCACGACCCAGGTTCTTTCTCCATATTCTGCTATCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCTTCCACCACGACCCAGGTTCTTTCTCCATATTCTGCTATCAC  195

seq1  C-AGGCATTAGCTGGGCCATCAGACTAGCTTCTCACAAGCTCAGCAGACA  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATTAGCTGGGCCATCAGACTAGCTTCTCACAAGCTCAGCAGACA  245

seq1  GCTACTGAAACTGAACTATCTTATCTTTAGGACAGTGTCCAGAAGCAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAAACTGAACTATCTTATCTTTAGGACAGTGTCCAGAAGCAGAA  295

seq1  GAGAGGGCCTCAGCAGCCTTCTACTATTTTGTATCAAGGAAAGAAAATCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCCTCAGCAGCCTTCTACTATTTTGTATCAAGGAAAGAAAATCT  345

seq1  CCAAGCCAGCAAAGAGAATAAGGAGTTCAGGGTCACTCTTGTCTCTCTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCAGCAAAGAGAATAAGGAGTTCAGGGTCACTCTTGTCTCTCTGT  395

seq1  GTCTACTTCCAGAGCAGCATGCGCTATCCGAGATCCAGTTTCAAAGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTCCAGAGCAGCATGCGCTATCCGAGATCCAGTTTCAAAGAAAG  445

seq1  GAGATTTTCTCAGATGTCTCCCCACTTTGACTCCAACTGCCTAGTAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCTCAGATGTCTCCCCACTTTGACTCCAACTGCCTAGTAAAAA  495

seq1  ATTTTCCATGACTAACATTGTTCTCTGCCCATCACTTAGCTCAGTGCTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATGACTAACATTGTTCTCTGCCCATCACTTAGCTCAGTGCTTG  545

seq1  AAGGTCAGCAAAATTAGACTCAGTACACGAAGCAGAAAAGAAAAGAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCAAAATTAGACTCAGTACACGAAGCAGAAAAGAAAAGAAAAA  595

seq1  TGAAGAGGATTAAGAAAGTAATGTTTCGGGCTGGTGAGATGGCTCAGCGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGGATTAAGAAAGTAATGTTTCGGGCTGGTGAGATGGCTCAGCGG  645

seq1  GTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCA  695

seq1  ACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGACTCCCTCTTCT  745

seq1  GGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAA  795

seq1  TCTTTAAAAAAAAAAAAAAAAAGAAAGTAATGTTTCAAATAGGCATGGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAAAAAAAAAAAAAGAAAGTAATGTTTCAAATAGGCATGGTG  845

seq1  GCACTTACCTGTAACGCCAGTATTTTGGATGCTGAGGAAGGAGAATTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTACCTGTAACGCCAGTATTTTGGATGCTGAGGAAGGAGAATTAAG  895

seq1  AATTTGAGTCCAGCCTGGGCTACTTAGTGAGTTCAAAGCCATCCAAGCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGTCCAGCCTGGGCTACTTAGTGAGTTCAAAGCCATCCAAGCCA  945

seq1  TGTACTGTGATCTTTTAAAAACACATTTCCTAGATAAGAAGCATTTGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTGATCTTTTAAAAACACATTTCCTAGATAAGAAGCATTTGAGC  995

seq1  CAGGTGTGCTGGTGTATTCCTTTAATCCCAGCACTTGGAAGGCAGCGGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGCTGGTGTATTCCTTTAATCCCAGCACTTGGAAGGCAGCGGCT  1045

seq1  GAAGGATCTCTGACAGTTCAGGGCCAACCTGGTCTACATAGAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCTCTGACAGTTCAGGGCCAACCTGGTCTACATAGAGAATTC  1093