BAC Information

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BAC

Clone NameB6Ng01-289K13
Chromosome2 (Build37)
Map Location 141,993,154 - 142,151,256
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289K13.bB6Ng01-289K13.g
ACCGA086996GA086997
length1,1161,139
definitionB6Ng01-289K13.b B6Ng01-289K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,150,151 - 142,151,256)(141,993,154 - 141,994,285)
sequence
gaattcagtgagatggatgaaagggttaaaatggcaattttgcattcagt
ataatattaggaaagaaatggcctaatattttacagtgggccagagagat
gcatttctggtattgtttcagtggtatgccgagctgtcacccagtactct
gtgtggaataatctaatgctaggctcatgggctaggatttttcagacttt
ctatttaatgaactgttttacgtagctacagaagaagttagtgtacagaa
aatataataataaaaatgaaattttcataacagtgacaatgacttgtccg
tggtgggagggggatatatttctttgtcatttttgacattaaccattctg
aaaatgtcagtgctcctgagttttctttgtagggaaatattcagaattca
gaattctgaatgtactatgcatatacatctccatttacctctacttcatt
acagatgttttatatatatatatatatatatatatatatatgtgtatgta
catatgtatattcttcaagtgttctctgatatgattttaatatagcgctg
ctttctttattaatgaatgatttaaataaaatcctttgcagacatttaat
tttgtatgatggtcatgattttatctttctgaaaattgcaattcagcctt
ataaaacatcttggagagtaatctaaatacagtgtcaccaaatgttaata
atttatacttgctgtcttttagaggaagttaattttatggaatacttacg
gataatatatatcataaaatattagatttaaatgcaaataaaagttaatc
ttttcattacttgtgataagaactcgggtactttaaatacagagtttcag
aattctaatatttcagaaaggaacaagcttagcatttagagttagaattc
tactttagggacagacagatctttttgattttgaaattgcttccatgagt
cacaacagttgtagaatcactgcctttgggccagggcccagactaatcta
gacctggaaacaaattaattgtatatgaaatatggagaattagttaaggg
gaggagaataaagcaagaaccaagggatgcagtatgtatgctgaatgcta
tgagggtcccttagag

gaattccttcaaaactggagatggggtaccatttactagaagagcatctt
agcctcatgtgtcaggggcattgtgatctggtttaggaaaaccagtgaag
acactggtgcaaagggcctctgctaagtaacaaaggccccaggtcatttc
acccttgaacagggtgcataaccaggtggtcatcatcaaacatctcgatc
tgggtttaaccatcagccataaagaaagtcgagaggttcaaaacgaagga
gtatttgatatacttttttctgccttgaggggggcaagagtcaaaaacag
gacaaaaacaaaaacaaaacaaaaaaacttgcagggaacttcagagagct
agtgagaatgatccagaatcctaccagcacagaaatgggaacccatgcct
acagctgtaaagaactgaatctgctctctgccaaatgagtgtccagagcc
cagtccacctgacacattgacttctacctagtgatgccttgaacagaaaa
atcagcacactatgctggatgttgggtccacagaacctcaagctaaaata
cagacgttgtcttactactgaaccacatagcctaccatgtctctattcca
agttagagttgaggaagctgaggtttaaaaaggctaaatggcttccttta
ggtcaaaacagggcagagatacaatacaacttggcagatgggccagtggg
gtaacacagagctagcttatgtgggaggcagaagactcatgaggcctagg
atggtgatacccatccctgaatgtgcctattttgttcagatttctctgcc
ttgagggtgcaaatggcaaacaaaatgattcagtaatgcccttgattaag
aaaagtgattgtcacagctatgactaaggcgtttaatcaatgactttatt
taaagagaggttgtcctactgggcctgacctaattaggtggtcctttgct
aactttatttaatgtgtgtgtgtgtgtatacacacactcgcatgtacaat
aatacaatatgtgtgtcagtggaaaggagccagcgcatcaatagcttacg
tctttttaaaggaagatactggacttcagcagagagggagtgagttcaaa
ccggaagttccaagaaatcatgcattccgactgactggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142150151_142151256
seq2: B6Ng01-289K13.b_47_1162 (reverse)

seq1  CTCTAA-GGACCCTC-TAGCATCCGGC-TACATCCTGCATCCCTTTG-TC  46
      |||||| |||||||| |||||| | || ||||| ||||||||||| | ||
seq2  CTCTAAGGGACCCTCATAGCATTCAGCATACATACTGCATCCCTTGGTTC  50

seq1  CTGCTTTA-TCTCCTCCCCTTTACTAA-TCTCCATATTTCATTTACAATT  94
       ||||||| |||||||||||| ||||| |||||||||||||| |||||||
seq2  TTGCTTTATTCTCCTCCCCTTAACTAATTCTCCATATTTCATATACAATT  100

seq1  AAATTTGTTT-CAAGTCTAGATTAGTCT-GGCCCTGGCCC-AAGGCAGGT  141
       ||||||||| || |||||||||||||| ||||||||||| |||||| ||
seq2  -AATTTGTTTCCAGGTCTAGATTAGTCTGGGCCCTGGCCCAAAGGCA-GT  148

seq1  GATTCTACAACTG-TGTGACTCATGGAAGCAATTTCAAAATCAAAAAGAT  190
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATTCTACAACTGTTGTGACTCATGGAAGCAATTTCAAAATCAAAAAGAT  198

seq1  CTGTCTGTCCCT-AAGTAGAATTCTAACTCTAAATGCTAAGCTTGTTCCT  239
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCCCTAAAGTAGAATTCTAACTCTAAATGCTAAGCTTGTTCCT  248

seq1  TTCTGAAATATTAGAATTCTGAAACTCTGTATTTAAAGTACCCGAGTTCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAATATTAGAATTCTGAAACTCTGTATTTAAAGTACCCGAGTTCT  298

seq1  TATCACAAGTAATGAAAAGATTAACTTTTATTTGCATTTAAATCTAATAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAGTAATGAAAAGATTAACTTTTATTTGCATTTAAATCTAATAT  348

seq1  TTTATGATATATATTATCCGTAAGTATTCCATAAAATTAACTTCCTCT-A  388
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTATGATATATATTATCCGTAAGTATTCCATAAAATTAACTTCCTCTAA  398

seq1  AAGACAGCAAGTATAAATTATTAACATTTGGTGACACTGTATTTAGATTA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCAAGTATAAATTATTAACATTTGGTGACACTGTATTTAGATTA  448

seq1  CTCTCCAAGATGTTTTATAAGGCTGAATTGCAATTTTCAGAAAGATAAAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGATGTTTTATAAGGCTGAATTGCAATTTTCAGAAAGATAAAA  498

seq1  TCATGACCATCATACAAAATTAAATGTCTGCAAAGGATTTTATTTAAATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCATCATACAAAATTAAATGTCTGCAAAGGATTTTATTTAAATC  548

seq1  ATTCATTAATAAAGAAAGCAGCGCTATATTAAAATCATATCAGAGAACAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAATAAAGAAAGCAGCGCTATATTAAAATCATATCAGAGAACAC  598

seq1  TTGAAGAATATACATATGTACATACACATATATATATATATATATATATA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAATATACATATGTACATACACATATATATATATATATATATATA  648

seq1  TATATATAAAACATCTGTAATGAAGTAGAGGTAAATGGAGATGTATATGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAACATCTGTAATGAAGTAGAGGTAAATGGAGATGTATATGC  698

seq1  ATAGTACATTCAGAATTCTGAATTCTGAATATTTCCCTACAAAGAAAACT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATTCAGAATTCTGAATTCTGAATATTTCCCTACAAAGAAAACT  748

seq1  CAGGAGCACTGACATTTTCAGAATGGTTAATGTCAAAAATGACAAAGAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCACTGACATTTTCAGAATGGTTAATGTCAAAAATGACAAAGAAA  798

seq1  TATATCCCCCTCCCACCACGGACAAGTCATTGTCACTGTTATGAAAATTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCCCTCCCACCACGGACAAGTCATTGTCACTGTTATGAAAATTT  848

seq1  CATTTTTATTATTATATTTTCTGTACACTAACTTCTTCTGTAGCTACGTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATTATTATATTTTCTGTACACTAACTTCTTCTGTAGCTACGTA  898

seq1  AAACAGTTCATTAAATAGAAAGTCTGAAAAATCCTAGCCCATGAGCCTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCATTAAATAGAAAGTCTGAAAAATCCTAGCCCATGAGCCTAG  948

seq1  CATTAGATTATTCCACACAGAGTACTGGGTGACAGCTCGGCATACCACTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATTATTCCACACAGAGTACTGGGTGACAGCTCGGCATACCACTG  998

seq1  AAACAATACCAGAAATGCATCTCTCTGGCCCACTGTAAAATATTAGGCCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATACCAGAAATGCATCTCTCTGGCCCACTGTAAAATATTAGGCCA  1048

seq1  TTTCTTTCCTAATATTATACTGAATGCAAAATTGCCATTTTAACCCTTTC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCTAATATTATACTGAATGCAAAATTGCCATTTTAACCCTTTC  1098

seq1  ATCCATCTCACTGAATTC  1106
      ||||||||||||||||||
seq2  ATCCATCTCACTGAATTC  1116


seq1: chr2_141993154_141994285
seq2: B6Ng01-289K13.g_69_1207

seq1  GAATTCCTTCAAAACTGGAGATGGGGTACCATTTACTAGAAGAGCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAAACTGGAGATGGGGTACCATTTACTAGAAGAGCATCTT  50

seq1  AGCCTCATGTGTCAGGGGCATTGTGATCTGGTTTAGGAAAACCAGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCATGTGTCAGGGGCATTGTGATCTGGTTTAGGAAAACCAGTGAAG  100

seq1  ACACTGGTGCAAAGGGCCTCTGCTAAGTAACAAAGGCCCCAGGTCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTGCAAAGGGCCTCTGCTAAGTAACAAAGGCCCCAGGTCATTTC  150

seq1  ACCCTTGAACAGGGTGCATAACCAGGTGGTCATCATCAAACATCTCGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGAACAGGGTGCATAACCAGGTGGTCATCATCAAACATCTCGATC  200

seq1  TGGGTTTAACCATCAGCCATAAAGAAAGTCGAGAGGTTCAAAACGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAACCATCAGCCATAAAGAAAGTCGAGAGGTTCAAAACGAAGGA  250

seq1  GTATTTGATATACTTTTTTCTGCCTTGAGGGGGGCAAGAGTCAAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGATATACTTTTTTCTGCCTTGAGGGGGGCAAGAGTCAAAAACAG  300

seq1  GACAAAAACAAAAACAAAACAAAAAAACTTGCAGGGAACTTCAGAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACAAAAACAAAACAAAAAAACTTGCAGGGAACTTCAGAGAGCT  350

seq1  AGTGAGAATGATCCAGAATCCTACCAGCACAGAAATGGGAACCCATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATGATCCAGAATCCTACCAGCACAGAAATGGGAACCCATGCCT  400

seq1  ACAGCTGTAAAGAACTGAATCTGCTCTCTGCCAAATGAGTGTCCAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTAAAGAACTGAATCTGCTCTCTGCCAAATGAGTGTCCAGAGCC  450

seq1  CAGTCCACCTGACACATTGACTTCTACCTAGTGATGCCTTGAACAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCTGACACATTGACTTCTACCTAGTGATGCCTTGAACAGAAAA  500

seq1  ATCAGCACACTATGCTGGATGTTGGGTCCACAGAACCTCAAGCTAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACACTATGCTGGATGTTGGGTCCACAGAACCTCAAGCTAAAATA  550

seq1  CAGACGTTGTCTTACTACTGAACCACATAGCCTACCATGTCTCTATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTTGTCTTACTACTGAACCACATAGCCTACCATGTCTCTATTCCA  600

seq1  AGTTAGAGTTGAGGAAGCTGAGGTTTAAAAAGGCTAAATGGCTTCCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGTTGAGGAAGCTGAGGTTTAAAAAGGCTAAATGGCTTCCTTTA  650

seq1  GGTCAAAACAGGGCAGAGATACAATACAACTTGGCAGATGGGCCAGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAACAGGGCAGAGATACAATACAACTTGGCAGATGGGCCAGTGGG  700

seq1  GTAACACAGAGCTAGCTTATGTGGGAGGCAGAAGACTCAGGAGGCCTAGG  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAACACAGAGCTAGCTTATGTGGGAGGCAGAAGACTCATGAGGCCTAGG  750

seq1  ATGGTGATACCCATCCCTGAATGTGCCTATTTTGTTCAGATTTCTCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATACCCATCCCTGAATGTGCCTATTTTGTTCAGATTTCTCTGCC  800

seq1  TTGAGGGTGCAAATGGCAAACAAAATGATTCAGTAATGCCCTTGATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGTGCAAATGGCAAACAAAATGATTCAGTAATGCCCTTGATTAAG  850

seq1  AAAAGTGATTGTCACAGCTATGACTAAGGCGTTTAATCAATGAC-TTAAT  899
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  AAAAGTGATTGTCACAGCTATGACTAAGGCGTTTAATCAATGACTTTATT  900

seq1  TAAAGAGAGGTTGTCCTACTGGGCCTGACCTAATTAGGTGGGTCCTTTGC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAGAGAGGTTGTCCTACTGGGCCTGACCTAATTAGGT-GGTCCTTTGC  949

seq1  TAACTTTATTTAATGTGTGTGTGTGTGTATACACACACTCGCATGTACA-  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACTTTATTTAATGTGTGTGTGTGTGTATACACACACTCGCATGTACAA  999

seq1  -TATACAATATGTGTGTCAGTGG-AAGGAGCCAGCCGCATCAATAGC-TA  1045
        ||||||||||||||||||||| |||||||||| |||||||||||| ||
seq2  TAATACAATATGTGTGTCAGTGGAAAGGAGCCAG-CGCATCAATAGCTTA  1048

seq1  CGTC-TTTTAGAGG-AGATACT-GAGTTCAGCAAGAGA-GGAGTGAG-TC  1090
      |||| ||||| ||| ||||||| || |||||| ||||| |||||||| ||
seq2  CGTCTTTTTAAAGGAAGATACTGGACTTCAGC-AGAGAGGGAGTGAGTTC  1097

seq1  AGACAGGAGGTTCAGAAGAATCATGCATCCCGACTGACTGGC  1132
      | || ||| ||||  |  |||||||||| |||||||||||||
seq2  AAACCGGAAGTTCCAAGAAATCATGCATTCCGACTGACTGGC  1139


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