BAC Information

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BAC

Clone NameB6Ng01-290H11
Chromosome2 (Build37)
Map Location 43,337,949 - 43,339,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLrp1b, LOC100041228
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290H11.bB6Ng01-290H11.g
ACCGA087602GA087603
length1,1981,103
definitionB6Ng01-290H11.b B6Ng01-290H11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatcattccaacacttttatcatgaatgggtgttggatcttg
tcaaatgttttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagggagaattttattgaggatttttgc
atcgatattcataagagaaattgttctgaagttctctatcttttttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggatttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccattttgtccagcttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttattaat
taggattttgtccctgtgccccttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttgttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaatttgcttccttttttttctaga
gcttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttctt
tcttggaggcactcagagctattgagtttcctcttagaaatgctttcatt
gtgtcccataaggttgggtacattgtggcttcattttcatttaaacttct
aaaagtctttaaattcttttctttaattcttcatggatcaaggtatcaat
tgaagaagaagtggttgtcaattccacggtggaatgctggctttccataa
tattctgttatggaagaatccagatccttaggcccattggggtggggg
gaattctttaggcattacagtttccaccttcctgtattatggctttgaaa
tgttatttaaggcagtaatctaaaaattttgatggacccatttgtttcat
gcctggcaatgttgaaattttatgtcaagtgtattaaaactattcatcat
aatttgtccatttccattttgcatttttgttatattggttgggatttgat
tattttacatataatagtaaatgctcaataaaattgaagtctgagaattt
aacaataattaattaatttttgttactgctgtaacagattttacaagcta
ccaggactcttttttataattttaaattctgaaactatggtgttggcaag
gtgtgtccatgacaggctgtgtgggacagcccatttccttcctttgcact
actcagagtccagtggcattccttacatattaaccccttcttgtgctttc
gaaatgaatcatgtctttatctgtctccattgtactgtatccatagtctg
tcatctctccttctgtcttacaaggacccattattacattgggtttagtt
agataatttaaaattatatgcttctctcaaaatgtttgccccatcaacaa
ctttcttcccttttttgggttaggtagtaatatataatagggactgagga
ttagggaatgagcagacactcagagcataattctcaatttacacatacta
caaaatcattttaaaatattttccaagctaacaattagatgttttcaatt
gtgtgcgcctttcctctctttttgtgagcaattactttgcttttactttt
tactagaaagatccatatcttactagtaaatacctaaaatatttttaata
tatattgtatggcaaatattacctagaagtaaagatatgggtatgttata
cagactaatttgaacgaatatactttaaatatgtttagaaagaataaaat
aatgttttattatagtggaaatgttaatggttgattaaaatttatttcta
gtaattctaattctccctgtatcctcacatactgatcagaaagtgtatca
actaatctgtcattagaaataccaagaggcttacgaactgtaaaatttta
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43337949_43339054
seq2: B6Ng01-290H11.g_62_1164 (reverse)

seq1  TATTAAAATTTTACAGGTTTGCTAAGCCTCTGTGT-TTTCTTAAATG-CA  48
      ||||||||||||||||  ||  |||||||||  || |||||  |||| ||
seq2  TATTAAAATTTTACAG--TTCGTAAGCCTCTTGGTATTTCT--AATGACA  46

seq1  GATTAGTTGATACACTTTCTGATTAAGTATGTGA-GATACA-GGAGAATT  96
      |||||||||||||||||||||| | ||||||||| |||||| |||||| |
seq2  GATTAGTTGATACACTTTCTGA-TCAGTATGTGAGGATACAGGGAGAA-T  94

seq1  TAGAATAACTAGAAATAAATTTTAATCAACCATTTACATTTCCACTATAA  146
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGAATTACTAGAAATAAATTTTAATCAACCATTAACATTTCCACTATAA  144

seq1  TAAAACATTTATTTTATTCTTTCTAAACATATTTAAAGTATATTCGTTCA  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACA-TTATTTTATTCTTTCTAAACATATTTAAAGTATATTCGTTCA  193

seq1  AATTAGTCTGTATAACATACCCATATCTTTACTTCTAGGTAATATTTGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCTGTATAACATACCCATATCTTTACTTCTAGGTAATATTTGCC  243

seq1  ATACAATATATATTAAAAATATTTTAGGTATTTACTAGTAAGATATGGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATATATTAAAAATATTTTAGGTATTTACTAGTAAGATATGGAT  293

seq1  CTTTCTAGTAAAAAGTAAAAGCAAAGTAATTGCTCACAAAAAGAGAGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTAAAAAGTAAAAGCAAAGTAATTGCTCACAAAAAGAGAGGAA  343

seq1  AGGCGCACACAATTGAAAACATCTAATTGTTAGCTTGGAAAATATTTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCACACAATTGAAAACATCTAATTGTTAGCTTGGAAAATATTTTAA  393

seq1  AATGATTTTGTAGTATGTGTAAATTGAGAATTATGCTCTGAGTGTCTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTGTAGTATGTGTAAATTGAGAATTATGCTCTGAGTGTCTGCT  443

seq1  CATTCCCTAATCCTCAGTCCCTATTATATATTACTACCTAACCCAAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTAATCCTCAGTCCCTATTATATATTACTACCTAACCCAAAAAA  493

seq1  GGGAAGAAAGTTGTTGATGGGGCAAACATTTTGAGAGAAGCATATAATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGTTGTTGATGGGGCAAACATTTTGAGAGAAGCATATAATTT  543

seq1  TAAATTATCTAACTAAACCCAATGTAATAATGGGTCCTTGTAAGACAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTAACTAAACCCAATGTAATAATGGGTCCTTGTAAGACAGAA  593

seq1  GGAGAGATGACAGACTATGGATACAGTACAATGGAGACAGATAAAGACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGACAGACTATGGATACAGTACAATGGAGACAGATAAAGACAT  643

seq1  GATTCATTTCGAAAGCACAAGAAGGGGTTAATATGTAAGGAATGCCACTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTCGAAAGCACAAGAAGGGGTTAATATGTAAGGAATGCCACTG  693

seq1  GACTCTGAGTAGTGCAAAGGAAGGAAATGGGCTGTCCCACACAGCCTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGAGTAGTGCAAAGGAAGGAAATGGGCTGTCCCACACAGCCTGTC  743

seq1  ATGGACACACCTTGCCAACACCATAGTTTCAGAATTTAAAATTATAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACACCTTGCCAACACCATAGTTTCAGAATTTAAAATTATAAAAA  793

seq1  AGAGTCCTGGTAGCTTGTAAAATCTGTTACAGCAGTAACAAAAATTAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTGGTAGCTTGTAAAATCTGTTACAGCAGTAACAAAAATTAATT  843

seq1  AATTATTGTTAAATTCTCAGACTTCAATTTTATTGAGCATTTACTATTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTTAAATTCTCAGACTTCAATTTTATTGAGCATTTACTATTAT  893

seq1  ATGTAAAATAATCAAATCCCAACCAATATAACAAAAATGCAAAATGGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAATAATCAAATCCCAACCAATATAACAAAAATGCAAAATGGAAA  943

seq1  TGGACAAATTATGATGAATAGTTTTAATACACTTGACATAAAATTTCAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAATTATGATGAATAGTTTTAATACACTTGACATAAAATTTCAAC  993

seq1  ATTGCCAGGCATGAAACAAATGGGTCCATCAAAATTTTTAGATTACTGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGGCATGAAACAAATGGGTCCATCAAAATTTTTAGATTACTGCC  1043

seq1  TTAAATAACATTTCAAAGCCATAATACAGGAAGGTGGAAACTGTAATGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAACATTTCAAAGCCATAATACAGGAAGGTGGAAACTGTAATGCC  1093

seq1  TAAAGAATTC  1106
      ||||||||||
seq2  TAAAGAATTC  1103