BAC Information

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BAC

Clone NameB6Ng01-290K02
Chromosome2 (Build37)
Map Location 52,064,077 - 52,065,213
singlet/doubletsinglet
Overlap geneNeb
Upstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290K02.bB6Ng01-290K02.g
ACCGA087724GA087725
length9471,143
definitionB6Ng01-290K02.b B6Ng01-290K02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgttaaaaattctgtttagctctttacctcgtttttaaattg
ggttttttttgggttgttgatatctaacttcatatatatatgtatatata
tatatatatgcccttgtcagatgtagggttggtgaagatcctttcccaat
ctgtaggctgccattttgtcctaatgatagtttcctttgccttatagaag
cttttcagtttcatgaggtccatttatcaattgttaatcttagaagctga
tccattggtgttctgttaaggaaattgtctcctttaccagtgtgctcaag
gctatttcccactttctcttctattagatttagtgtatctggttttatat
tgaggtcttcaagtcactaggatttgaattttgtgcagggtgataaatat
ggatctatttttattattctacatgtaaacatccagttagaccaatatca
tttgtctgtaggtatgtgggtttatttctgcggctttgatttgattcctt
tgatcaatctgtctgtttctataccaataccacgcagttttattactatt
gctttgtagttcagcttgaattcttagctggtgatacctccagaagcctt
ttgagtgtatgggattgggattgggattttgttttgtctttccacatgaa
gctgagatctgttctttcaagatctgtaaagaattttgttggaattttga
tcatgtggggcaattgcattgaatctgtagattgcttttggtaagatggc
tattttaccatgttaatttctaccaatccatgagcatgaagagatcttct
aatctttctgatacctttttcagtttctatcttcagagatttgaagttct
tgtcatacaggatcttttcacttggcttggattagagttacaccaagata
ttttatattatttgtggactattgtgaaggggatgttgtttccctgt
gaattcagtgcccctaagttagtcagtataaggtgatgtgctgtaagagt
tagctcaatggagtgctattggcattaaggagcggttgacataggaaagg
tttaccaaagaggctgcagttttaggtagacagggtacctcacctctgct
acagttagctacctggacagaaggagggagcttgcacatgcaaatggtca
ggaaggtttagggaatgggacagcatctcctctaatctggacaagcctgc
ctgctcccatcaccaccttctctcctgccctagctcctgggctcgctggc
cctttccagacaaaatgaagagtggatgatgggaataaagtcattttgta
gcaatcaatgaagcagtctcctttcctatcaggtagtgatgagaagacct
acgatgagtcttctgcatctgacatagggctgtaatgtgtgttcaggctt
ccctgtgaggtggcctgtgtcattatgtactacattcatattctctctct
ttctctgtctctgtctctgtctctgtctctctgtcactgaatttcttgta
agcagttccttaagtgtcttaaagagtaagatgttcagtgaaataggaag
gaggcttttcaatctttatctggggtcatgagtgctaaaacctcagctca
gtctccagcatcttccctttctagggataaagctaaatgcttatggtcca
gactgacattcctttttagggaatgctgcttattcttctcagagcgtatg
gtatagtctagataacaagaaacgacagttacttacgtcactctgaaggt
cataggcaatttttgcctgaataacatcattttggtcagggtggcacgtc
cactggtgtaggtattgacggtaatcgatgtcactgacaaggttctgccc
ttccttggcggccacaaccgacaccatgtcagcaggatattgattttggg
cctttgacttatggtagctctcctttgtagagcctgtcgttctgaatctg
ggcctgcgtgctcaaacccaaaccagctgggatcgtctcttcattgtagg
aacgcccaacgtagtggacctcgctgcctaacgtggcctcagctttgtat
ttcagctgcataagcagaatacagaaccagaagcttggataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52064077_52065213
seq2: B6Ng01-290K02.g_72_1214

seq1  GAATTCAGTG-CCTTAAG-GAGTCAGTATAAGGTGATGTGCTGTAAGAGT  48
      |||||||||| || ||||  ||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCCCTAAGTTAGTCAGTATAAGGTGATGTGCTGTAAGAGT  50

seq1  TAGCTCAATGGAGTGCTATTGGCATTAAGGAGCGGTTGACATAGGAAAGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATGGAGTGCTATTGGCATTAAGGAGCGGTTGACATAGGAAAGG  100

seq1  TTTACCAAAGAGGCTGCAGTTTTAGGTAGACAGGGTACCTCACCTCTGCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAAGAGGCTGCAGTTTTAGGTAGACAGGGTACCTCACCTCTGCT  150

seq1  ACAGTTAGCTACCTGGACAGAAGGAGGGAGCTTGCACATGCAAATGGTCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGCTACCTGGACAGAAGGAGGGAGCTTGCACATGCAAATGGTCA  200

seq1  GGAAGGTTTAGGGAATGGGACAGCATCTCCTCTAATCTGGACAAGCCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTTAGGGAATGGGACAGCATCTCCTCTAATCTGGACAAGCCTGC  250

seq1  CTGCTCCCATCACCACCTTCTCTCCTGCCCTAGCTCCTGGGCTCGCTGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCATCACCACCTTCTCTCCTGCCCTAGCTCCTGGGCTCGCTGGC  300

seq1  CCTTTCCAGACAAAATGAAGAGTGGATGATGGGAATAAAGTCATTTTGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCAGACAAAATGAAGAGTGGATGATGGGAATAAAGTCATTTTGTA  350

seq1  GCAATCAATGAAGCAGTCTCCTTTCCTATCAGGTAGTGATGAGAAGACCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAATGAAGCAGTCTCCTTTCCTATCAGGTAGTGATGAGAAGACCT  400

seq1  ACGATGAGTCTTCTGCATCTGACATAGGGCTGTAATGTGTGTTCAGGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAGTCTTCTGCATCTGACATAGGGCTGTAATGTGTGTTCAGGCTT  450

seq1  CCCTGTGAGGTGGCCTGTGTCATTATGTACTACATTCATATTCTCTCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGGTGGCCTGTGTCATTATGTACTACATTCATATTCTCTCTCT  500

seq1  TTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTCACTGAATTTCTTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTCACTGAATTTCTTGTA  550

seq1  AGCAGTTCCTTAAGTGTCTTAAAGAGTAAGATGTTCAGTGAAATAGGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCCTTAAGTGTCTTAAAGAGTAAGATGTTCAGTGAAATAGGAAG  600

seq1  GAGGCTTTTCAATCTTTATCTGGGGTCATGAGTGCTAAAACCTCAGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTCAATCTTTATCTGGGGTCATGAGTGCTAAAACCTCAGCTCA  650

seq1  GTCTCCAGCATCTTCCCTTTCTAGGGATAAAGCTAAATGCTTATGGTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGCATCTTCCCTTTCTAGGGATAAAGCTAAATGCTTATGGTCCA  700

seq1  GACTGACATTCCTTTTTAGGGAATGCTGCTTATTCTTCTCAGAGCGTATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACATTCCTTTTTAGGGAATGCTGCTTATTCTTCTCAGAGCGTATG  750

seq1  GTATAGTCTAGATAACAAGAAACGACAGTTACTTACGTCACTCTGAAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCTAGATAACAAGAAACGACAGTTACTTACGTCACTCTGAAGGT  800

seq1  CATAGGCAATTTTTGCCTGAATAACATCATTTTGGTCAGGGTGGCACGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCAATTTTTGCCTGAATAACATCATTTTGGTCAGGGTGGCACGTC  850

seq1  CACTGGTGTAGGTATTGACGGTAATCGATGTCACTGACAAGGTTCTGCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGTAGGTATTGACGGTAATCGATGTCACTGACAAGGTTCTGCCC  900

seq1  TTCCTTGGCGGCCACAACCGACACCATGTCAGCAGGGATATTGATTTT-G  947
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  TTCCTTGGCGGCCACAACCGACACCATGTCAGCA-GGATATTGATTTTGG  949

seq1  GCCTTTGACTTATGGTAGCTCTCC-TTGTAGAGCCTGTCGTTCTGAATCT  996
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTTTGACTTATGGTAGCTCTCCTTTGTAGAGCCTGTCGTTCTGAATCT  999

seq1  -GGCCTGCGTGCTCAAA-CCAAACCAGCTTGGGATCGTCTC-TCATTGTA  1043
       |||||||||||||||| |||||||||| |||||||||||| ||||||||
seq2  GGGCCTGCGTGCTCAAACCCAAACCAGC-TGGGATCGTCTCTTCATTGTA  1048

seq1  GGAACG-CCAACGTAGTGG-CCTCGCTGCTTAACGTG--CTCAGCTTTGT  1089
      |||||| |||||||||||| ||||||||| |||||||  |||||||||||
seq2  GGAACGCCCAACGTAGTGGACCTCGCTGCCTAACGTGGCCTCAGCTTTGT  1098

seq1  ATTTCAGCTGCAGAGAGGCAGAATACAGAACCCAGAAGCTTTGATAAG  1137
      |||||||||||  | | ||||||||||||| |||||||||| ||||||
seq2  ATTTCAGCTGC--ATAAGCAGAATACAGAA-CCAGAAGCTTGGATAAG  1143