BAC Information

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BAC

Clone NameB6Ng01-290O20
Chromosome2 (Build37)
Map Location 8,865,745 - 8,998,195
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290O20.bB6Ng01-290O20.g
ACCGA087945GA087946
length1,144771
definitionB6Ng01-290O20.b B6Ng01-290O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,997,060 - 8,998,195)(8,865,745 - 8,866,514)
sequence
gaattctgtccatctcttttttaactagggtctcctggaacttgcaaggt
gggatagcctggttggctggcaagtcccaagtcccataaattcacctgtc
tccatttcttccttgtactatcacagttacttcttttataaacatagttt
cccagcatcaaactcagatcctcctggtttcaaagcaaacactttaacaa
ccgattcattcccccagcagggagactcattcatttgacatgtgttacat
aatcaaccccagtgttggctgtggaataaatgcaggaggatggaggacag
caatattaaatagcaaggagagactggctcttcctctgtggagtcttaca
attatatgtcaatcatggctccctgaccactgggtcactggtagcaagaa
gccaatctgaactggggacatgtcccgatgcttcagcttttattaatgat
ttttatctgggatctttagttataagctaagttcctagaagacaagggtg
aaatattctctgagtcgtgtttcaagccttcaataaaacattatgtccac
tgcagatgctcagtgcgtgtttatcacaatgactgagagataacgagctc
agaaaaggcgcaggcatgttgttgagttgcctgggaacaagggagagaga
cccagacaggaaaaaaaataccaaaaacaaacagaaattacatcagaatg
ggcaaatttctgatatttgttgtcatgcctactttgctgaggctcattta
aacagcttacagataggaagccagtatccagccaattcacgctgtgctcc
taaaagtcacttgttgagaatgaaatatttaaagacaccgtaggctttgc
atatatggctttctggttgagcttctaaaccagagggcaaagatctcact
gttctttctttagctcaagggagagcagctcactcctctgtcccactatt
aagtaagacactaagttagtggcccagttgtcttggattctttgtaggat
agctgaactatatccaggatgtttgagttgctttcattcaaatatgaaaa
atatcagtgtattgttctttagaagtaaatataaggccctatacgttgga
tgatttcgtaacaaggtgttcagaaaatagctggaggccaacaa

gaattcaaccatcatatcaactactcaaaactagctaccattcactatat
atgagatctgtaggggtgttgccttttcaatttttgcagcaaataacaga
gggcactttccttataaagatagaaacaggaatataaacattaaaacctc
ttccaaagcaagactaatatcatgagatgtatttggatttgaacctaagg
tgctcagaatctaaaactacacgttgcctattagactattttaaataatc
cttttcacccagaactgaaaccaaaaatatatcttcttattctcccagat
ttttaatagtacaactctttgcttgcatcttaatattttaaataaatatt
gctttaagtaaactaagccaagcatctagtattctctagaaaatcatgct
gatattaagaaggctttggggaaagttgtcacaaataccacttctgtaaa
agccaatttggtactcaaggctttagactcattgtgagctgctaagtcca
tgtggagaccaaagtgtgagttaattaatgacataggagacagatgctac
atatgcgtgaggagaaacagaacaagaggaagctctgtttatatcttcct
cggttgtctagaccactggaaataaagacctgtttctattttggtttcat
cattacaatgcccatcgtttgaaagaatacaaaattaacatagatagtga
acaactagaagaccagcttgactggtgacagactggcgggtgggtggatg
cataggtggtggatggatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_8997060_8998195
seq2: B6Ng01-290O20.b_45_1188 (reverse)

seq1  TTGTGGGCCT-CAGCTA-TTTCTG-ACA-CTTGTTACG-AATCAT-CAAC  44
      |||| ||||| |||||| |||||| ||| ||||||||| |||||| ||||
seq2  TTGTTGGCCTCCAGCTATTTTCTGAACACCTTGTTACGAAATCATCCAAC  50

seq1  GTATAGGGCCTTATATTTAC-TCTAAAGAAC-ATACACTGATAATTTTTC  92
      |||||||||||||||||||| |||||||||| |||||||||| |||||||
seq2  GTATAGGGCCTTATATTTACTTCTAAAGAACAATACACTGAT-ATTTTTC  99

seq1  AATATTTGAATG-AAGCAACTCAAACATCCTGGATATAGTTCAGCTATCC  141
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -ATATTTGAATGAAAGCAACTCAAACATCCTGGATATAGTTCAGCTATCC  148

seq1  TACAAAGAATCCAAGACAACT-GGCCACTAACTTAGTGTCTTACTTAATA  190
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACAAAGAATCCAAGACAACTGGGCCACTAACTTAGTGTCTTACTTAATA  198

seq1  GTGGGACAGAGGAGTGAGCTGCTCTCCCTTGAGCTAAAGAAAGAACAGTG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAGAGGAGTGAGCTGCTCTCCCTTGAGCTAAAGAAAGAACAGTG  248

seq1  AGATCTTTGCCCTCTGGTTTAGAAGCTCAACCAGAAAGCCATATATGCAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTGCCCTCTGGTTTAGAAGCTCAACCAGAAAGCCATATATGCAA  298

seq1  AGCCTACGGTGTCTTTAAATATTTCATTCTCAACAAGTGACTTTTAGGAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACGGTGTCTTTAAATATTTCATTCTCAACAAGTGACTTTTAGGAG  348

seq1  CACAGCGTGAATTGGCTGGATACTGGCTTCCTATCTGTAAGCTGTTTAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGTGAATTGGCTGGATACTGGCTTCCTATCTGTAAGCTGTTTAAA  398

seq1  TGAGCCTCAGCAAAGTAGGCATGACAACAAATATCAGAAATTTGCCCATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCAGCAAAGTAGGCATGACAACAAATATCAGAAATTTGCCCATT  448

seq1  CTGATGTAATTTCTGTTTGTTTTTGGTATTTTTTTTCCTGTCTGGGTCTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTAATTTCTGTTTGTTTTTGGTATTTTTTTTCCTGTCTGGGTCTC  498

seq1  TCTCCCTTGTTCCCAGGCAACTCAACAACATGCCTGCGCCTTTTCTGAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTGTTCCCAGGCAACTCAACAACATGCCTGCGCCTTTTCTGAGC  548

seq1  TCGTTATCTCTCAGTCATTGTGATAAACACGCACTGAGCATCTGCAGTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATCTCTCAGTCATTGTGATAAACACGCACTGAGCATCTGCAGTGG  598

seq1  ACATAATGTTTTATTGAAGGCTTGAAACACGACTCAGAGAATATTTCACC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGTTTTATTGAAGGCTTGAAACACGACTCAGAGAATATTTCACC  648

seq1  CTTGTCTTCTAGGAACTTAGCTTATAACTAAAGATCCCAGATAAAAATCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCTAGGAACTTAGCTTATAACTAAAGATCCCAGATAAAAATCA  698

seq1  TTAATAAAAGCTGAAGCATCGGGACATGTCCCCAGTTCAGATTGGCTTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAGCTGAAGCATCGGGACATGTCCCCAGTTCAGATTGGCTTCT  748

seq1  TGCTACCAGTGACCCAGTGGTCAGGGAGCCATGATTGACATATAATTGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCAGTGACCCAGTGGTCAGGGAGCCATGATTGACATATAATTGTA  798

seq1  AGACTCCACAGAGGAAGAGCCAGTCTCTCCTTGCTATTTAATATTGCTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCACAGAGGAAGAGCCAGTCTCTCCTTGCTATTTAATATTGCTGT  848

seq1  CCTCCATCCTCCTGCATTTATTCCACAGCCAACACTGGGGTTGATTATGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATCCTCCTGCATTTATTCCACAGCCAACACTGGGGTTGATTATGT  898

seq1  AACACATGTCAAATGAATGAGTCTCCCTGCTGGGGGAATGAATCGGTTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTCAAATGAATGAGTCTCCCTGCTGGGGGAATGAATCGGTTGT  948

seq1  TAAAGTGTTTGCTTTGAAACCAGGAGGATCTGAGTTTGATGCTGGGAAAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTTTGCTTTGAAACCAGGAGGATCTGAGTTTGATGCTGGGAAAC  998

seq1  TATGTTTATAAAAGAAGTAACTGTGATAGTACAAGGAAGAAATGGAGACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAAAAGAAGTAACTGTGATAGTACAAGGAAGAAATGGAGACA  1048

seq1  GGTGAATTTATGGGACTTGGGACTTGCCAGCCAACCAGGCTATCCCACCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATTTATGGGACTTGGGACTTGCCAGCCAACCAGGCTATCCCACCT  1098

seq1  TGCAAGTTCCAGGAGACCCTAGTTAAAAAAGAGATGGACAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTTCCAGGAGACCCTAGTTAAAAAAGAGATGGACAGAATTC  1144


seq1: chr2_8865745_8866514
seq2: B6Ng01-290O20.g_63_832

seq1  GAATTCAACCATCATATCAACTACTCAAAACTAGCTACCATTCACTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCATCATATCAACTACTCAAAACTAGCTACCATTCACTATAT  50

seq1  ATGAGATCTGTAGGGGTGTTGCCTTTTCAATTTTTGCAGCAAATAACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCTGTAGGGGTGTTGCCTTTTCAATTTTTGCAGCAAATAACAGA  100

seq1  GGGCACTTTCCTTATAAAGATAGAAACAGGAATATAAACATTAAAACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTTCCTTATAAAGATAGAAACAGGAATATAAACATTAAAACCTC  150

seq1  TTCCAAAGCAAGACTAATATCATGAGATGTATTTGGATTTGAACCTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGCAAGACTAATATCATGAGATGTATTTGGATTTGAACCTAAGG  200

seq1  TGCTCAGAATCTAAAACTACACGTTGCCTATTAGACTATTTTAAATAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAATCTAAAACTACACGTTGCCTATTAGACTATTTTAAATAATC  250

seq1  CTTTTCACCCAGAACTGAAACCAAAAATATATCTTCTTATTCTCCCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCCAGAACTGAAACCAAAAATATATCTTCTTATTCTCCCAGAT  300

seq1  TTTTAATAGTACAACTCTTTGCTTGCATCTTAATATTTTAAATAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGTACAACTCTTTGCTTGCATCTTAATATTTTAAATAAATATT  350

seq1  GCTTTAAGTAAACTAAGCCAAGCATCTAGTATTCTCTAGAAAATCATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGTAAACTAAGCCAAGCATCTAGTATTCTCTAGAAAATCATGCT  400

seq1  GATATTAAGAAGGCTTTGGGGAAAGTTGTCACAAATACCACTTCTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAAGAAGGCTTTGGGGAAAGTTGTCACAAATACCACTTCTGTAAA  450

seq1  AGCCAATTTGGTACTCAAGGCTTTAGACTCATTGTGAGCTGCTAAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTTGGTACTCAAGGCTTTAGACTCATTGTGAGCTGCTAAGTCCA  500

seq1  TGTGGAGACCAAAGTGTGAGTTAATTAATGACATAGGAGACAGATGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGACCAAAGTGTGAGTTAATTAATGACATAGGAGACAGATGCTAC  550

seq1  ATATGCGTGAGGAGAAACAGAACAAGAGGAAGCTCTGTTTATATCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGTGAGGAGAAACAGAACAAGAGGAAGCTCTGTTTATATCTTCCT  600

seq1  CGGTTGTCTAGACCACTGGAAATAAAGACCTGTTTCTATTTTGGTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTCTAGACCACTGGAAATAAAGACCTGTTTCTATTTTGGTTTCAT  650

seq1  CATTACAATGCCCATCGTTTGAAAGAATACAAAATTAACATAGATAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAATGCCCATCGTTTGAAAGAATACAAAATTAACATAGATAGTGA  700

seq1  ACAACTAGAAGACCAGCTTGACTGGTGACAGACTGGCGGGTGGGTGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGAAGACCAGCTTGACTGGTGACAGACTGGCGGGTGGGTGGATG  750

seq1  CATAGGTGGTGGATGGATGG  770
      ||||||||||||||||||||
seq2  CATAGGTGGTGGATGGATGG  770


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