BAC Information

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BAC

Clone NameB6Ng01-290P01
Chromosome2 (Build37)
Map Location 18,922,925 - 19,092,018
singlet/doubletdoublet
Overlap geneLOC667521
Upstream geneA930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik
Downstream geneArmc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290P01.bB6Ng01-290P01.g
ACCGA087955GA087956
length9741,041
definitionB6Ng01-290P01.b B6Ng01-290P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,922,925 - 18,924,105)(19,090,975 - 19,092,018)
sequence
gaattcctggatagtggctgcactttcaagaatctaccattgagttgcta
tcaatatgattagtctgctgtagggaaaagttagggctcaaaaactatga
cacaggagccaggcatttcctggattgtcttctatcgcccagtttctagt
cacatgataagaatttaagctggccaggtagtggtggcgcactcctttaa
tccagcactcaggaggcagaagcaggctgatatttgagttcaaggccagc
ctggtctacacagcagatatctataaccctttctcctaagagatggagac
aagaaaactgcctggagctcagaggtcagctgacctggcatttgcaggca
gtgtctgactcctccaaacacacaccacagcacacaagtctactcatcaa
atacgcatgcaagtgtgtgcacatacagtcatgcacacccacaaagacac
agaaaagcatggggaggagacttttcaggtcctctttgccacttattatt
gttattataatatttatgatgagtcaacttcactgtggaacagatctccc
tagatgtagaaaggagatgaactgcccctccccccactctgcaaaatgtt
tttgagaaaaaagatagctacagattgaaaataaatgagcagtatctgcc
caatgcatagaccctttgagttttttcatggatgtagaaaaggctggttt
ttgttgttttggagcagggtctctataagaagcccttggcttgtccttgg
aactcattttgcagaccaggctggccttagaaacttcacagagatccacc
atgcaaactgcctcccaaagtgctgaaattaaaaggtgttgtaccaacca
cactcattcaaaaaatttgatatttggcttcaaaaataatttgactcaaa
atgatttgcaaagctataggctattagttaaacattatattagaacttgc
ttcattcatgggttggcagaaaca
gaattccttctgtgattatggtttagtctttgtagtttataaaattatac
ctattactgtactgaatgatcactggccttcacctagactggtttacatt
aaaatatgttctcaattcaaatgacagatttctcaattgatttcactttg
atttttaaattctttttgtgatgtgagaaagaaaaagtcacaggttcaat
cctccaggaagcagttgggtagacagaattaaaaacagaaaaatatttat
catgaaccaagttatggaattggcctaggtgtctaccaaaaataatgagt
gaattttaaaaagcagtaaacatacacaacagatctttattctgtcataa
agaataaaattatgatttttatagggaaatcgatatacctggtgcccatc
accaaaagtgagttagatgcagaaagacaaacactggatgttttctctca
tacgtggaatctgacttctcaaaataaagcatgagagtagaagggagact
ggttggaaataagaaggaggcagctagagggcatgctcaaagatccagac
ttatgagaatgtcataatgaaatctatttattttgtaaatgaagaaatat
gtgctaacaaaataattaaaattaatttttcttatgaaagaaatgttata
aaatgaaaatggaaatggataaggatcagcaggggagccagcagaccaat
aaaaacagggctgtgtctgccatcaagacagagctctggagtgaagatga
catatgataagtgttttatactaagaccatgctgaagactggggtgggaa
gaatactggcttgcaaactgaagcagatcctgttgacctgtcacccacat
gacagctgttctggaggtcacccagaattgcagtggacttggttgtacat
gagaaatacatcttactgtttcaaaaccagatatgcagaaccctttcctt
catgttggaaacttttgggctaatatttctgtaatcttgctgccaccctc
cctctctggccttttctgaatgacacaaagtcctagattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_18922925_18924105
seq2: B6Ng01-290P01.b_47_1020

seq1  GAATTCCTGGATAGTGGCTGCACTTTCAAGAATCTACCATTGAGTTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATAGTGGCTGCACTTTCAAGAATCTACCATTGAGTTGCTA  50

seq1  TCAATATGATTAGTCTGCTGTAGGGAAAAGTTAGGGCTCAAAAACTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGATTAGTCTGCTGTAGGGAAAAGTTAGGGCTCAAAAACTATGA  100

seq1  CACAGGAGCCAGGCATTTCCTGGATTGTCTTCTATCGCCCAGTTTCTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCCAGGCATTTCCTGGATTGTCTTCTATCGCCCAGTTTCTAGT  150

seq1  CACATGATAAGAATTTAAGCTGGCCAGGTAGTGGTGGCGCACTCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATAAGAATTTAAGCTGGCCAGGTAGTGGTGGCGCACTCCTTTAA  200

seq1  TCCAGCACTCAGGAGGCAGAAGCAGGCTGATATTTGAGTTCAAGGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACTCAGGAGGCAGAAGCAGGCTGATATTTGAGTTCAAGGCCAGC  250

seq1  CTGGTCTACACAGCAGATATCTATAACCCTTTCTCCTAAGAGATGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACACAGCAGATATCTATAACCCTTTCTCCTAAGAGATGGAGAC  300

seq1  AAGAAAACTGCCTGGAGCTCAGAGGTCAGCTGACCTGGCATTTGCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTGCCTGGAGCTCAGAGGTCAGCTGACCTGGCATTTGCAGGCA  350

seq1  GTGTCTGACTCCTCCAAACACACACCACAGCACACAAGTCTACTCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGACTCCTCCAAACACACACCACAGCACACAAGTCTACTCATCAA  400

seq1  ATACGCATGCAAGTGTGTGCACATACAGTCATGCACACCCACAAAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCATGCAAGTGTGTGCACATACAGTCATGCACACCCACAAAGACAC  450

seq1  AGAAAAGCATGGGGAGGAGACTTTTCAGGTCCTCTTTGCCACTTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCATGGGGAGGAGACTTTTCAGGTCCTCTTTGCCACTTATTATT  500

seq1  GTTATTATAATATTTATGATGAGTCAACTTCACTGTGGAACAGATCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATAATATTTATGATGAGTCAACTTCACTGTGGAACAGATCTCCC  550

seq1  TAGATGTAGAAAGGAGATGAACTGCCCCTCCCCCCACTCTGCAAAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTAGAAAGGAGATGAACTGCCCCTCCCCCCACTCTGCAAAATGTT  600

seq1  TTTGAGAAAAAAGATAGCTACAGATTGAAAATAAATGAGCAGTATCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAAAAAGATAGCTACAGATTGAAAATAAATGAGCAGTATCTGCC  650

seq1  CAATGCATAGACCCTTTGAG-TTTTTCATGGATGTAGAAAAGGCTGG-TT  698
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CAATGCATAGACCCTTTGAGTTTTTTCATGGATGTAGAAAAGGCTGGTTT  700

seq1  TTGTTGTTTTGGAGCAGGGTCTCTATAAGAAGCCC-TGGC-TGTCC-TGG  745
      ||||||||||||||||||||||||||||||||||| |||| ||||| |||
seq2  TTGTTGTTTTGGAGCAGGGTCTCTATAAGAAGCCCTTGGCTTGTCCTTGG  750

seq1  AACTCATTTTGCAGACCAGGCTGGCC-TAGAA--CTCACAGAGATCCA-C  791
      |||||||||||||||||||||||||| |||||   ||||||||||||| |
seq2  AACTCATTTTGCAGACCAGGCTGGCCTTAGAAACTTCACAGAGATCCACC  800

seq1  ATGC-AACTGCCTCCC-AAGTGCTGAAATT-AAAGGTG-TGTA-CAACCA  836
      |||| ||||||||||| ||||||||||||| ||||||| |||| ||||||
seq2  ATGCAAACTGCCTCCCAAAGTGCTGAAATTAAAAGGTGTTGTACCAACCA  850

seq1  CACTCAGTCAAAAAAGTTGA-AATTGGCT--CAAAATAA-TTGACTCAAA  882
      |||||| |||||||| |||| | ||||||   ||||||| ||||||||||
seq2  CACTCATTCAAAAAATTTGATATTTGGCTTCAAAAATAATTTGACTCAAA  900

seq1  A-GAGTGCAAAAGCAATA-GCTA-TAG-TAAACA-TATAGTAG-ACCTGC  926
      | || |   ||||| ||| |||| ||| |||||| |||| ||| || |||
seq2  ATGATTTGCAAAGCTATAGGCTATTAGTTAAACATTATATTAGAACTTGC  950

seq1  TTCATTCA-GGGTCTGCAG-AACACAGTTACGCTGAGTGGGGAATGTTTA  974
      |||||||| ||||  |||| ||||                          
seq2  TTCATTCATGGGTTGGCAGAAACA--------------------------  974

seq1  ATGTAAACTTGAAATATTCACAAGCAACTTGTGAATTAGCTCTTTTAATG  1024
                                                        
seq2  --------------------------------------------------  974

seq1  TACAAATATGTATAAAGATTGATGAAACTCTTCTGACACAACAAAAACAC  1074
                                                        
seq2  --------------------------------------------------  974

seq1  TGTATTAAATATAGACTGTGAATACATTTTCATATCTTACTAGGAATGCC  1124
                                                        
seq2  --------------------------------------------------  974

seq1  TAAACCCAGTTTAGTGATACAGCTCTTTAATCTAGGCAGATTTGGGAGGC  1174
                                                        
seq2  --------------------------------------------------  974

seq1  AGAAACA  1181
             
seq2  -------  974

seq1: chr2_19090975_19092018
seq2: B6Ng01-290P01.g_71_1111 (reverse)

seq1  CCAATCTAGGAACTTTGTGTCACTCAGGAAAAGCCAGAGAGGGAGGGTGG  50
      |||||||||| ||||||||||| |||| ||| ||||||||||||||||||
seq2  CCAATCTAGG-ACTTTGTGTCATTCAGAAAAGGCCAGAGAGGGAGGGTGG  49

seq1  CAGCAAAAGATTACAAGAAATA-TAGCCAAAAGGTTTCCAACATTGAAGG  99
      ||||  |||||||| ||||||| ||||| ||| |||||||||| ||||||
seq2  CAGC--AAGATTAC-AGAAATATTAGCCCAAAAGTTTCCAACA-TGAAGG  95

seq1  AAA-GGTTCTGCATATCTGGTTTTGAAAACAGTAAGATGTATTTCTCATG  148
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAGGGTTCTGCATATCTGGTTTTG-AAACAGTAAGATGTATTTCTCATG  144

seq1  TAC-ACCAAGTCCACTGCAATTCTGGGTGACCTCCAGAACAGCTGTCATG  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCAAGTCCACTGCAATTCTGGGTGACCTCCAGAACAGCTGTCATG  194

seq1  TGGGTGACAGGTCAACAGGATCTGCTTCAGTTTGCAAGCCAGTATTCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACAGGTCAACAGGATCTGCTTCAGTTTGCAAGCCAGTATTCTTC  244

seq1  CCACCCCAGTCTTCAGCATGGTCTTAGTATAAAACACTTATCATATGTCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGTCTTCAGCATGGTCTTAGTATAAAACACTTATCATATGTCA  294

seq1  TCTTCACTCCAGAGCTCTGTCTTGATGGCAGACACAGCCCTGTTTTTATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCCAGAGCTCTGTCTTGATGGCAGACACAGCCCTGTTTTTATT  344

seq1  GGTCTGCTGGCTCCCCTGCTGATCCTTATCCATTTCCATTTTCATTTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTGGCTCCCCTGCTGATCCTTATCCATTTCCATTTTCATTTTAT  394

seq1  AACATTTCTTTCATAAGAAAAATTAATTTTAATTATTTTGTTAGCACATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTTCATAAGAAAAATTAATTTTAATTATTTTGTTAGCACATA  444

seq1  TTTCTTCATTTACAAAATAAATAGATTTCATTATGACATTCTCATAAGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTACAAAATAAATAGATTTCATTATGACATTCTCATAAGTC  494

seq1  TGGATCTTTGAGCATGCCCTCTAGCTGCCTCCTTCTTATTTCCAACCAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTGAGCATGCCCTCTAGCTGCCTCCTTCTTATTTCCAACCAGT  544

seq1  CTCCCTTCTACTCTCATGCTTTATTTTGAGAAGTCAGATTCCACGTATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTACTCTCATGCTTTATTTTGAGAAGTCAGATTCCACGTATGA  594

seq1  GAGAAAACATCCAGTGTTTGTCTTTCTGCATCTAACTCACTTTTGGTGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACATCCAGTGTTTGTCTTTCTGCATCTAACTCACTTTTGGTGAT  644

seq1  GGGCACCAGGTATATCGATTTCCCTATAAAAATCATAATTTTATTCTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCAGGTATATCGATTTCCCTATAAAAATCATAATTTTATTCTTTA  694

seq1  TGACAGAATAAAGATCTGTTGTGTATGTTTACTGCTTTTTAAAATTCACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAATAAAGATCTGTTGTGTATGTTTACTGCTTTTTAAAATTCACT  744

seq1  CATTATTTTTGGTAGACACCTAGGCCAATTCCATAACTTGGTTCATGATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTTGGTAGACACCTAGGCCAATTCCATAACTTGGTTCATGATA  794

seq1  AATATTTTTCTGTTTTTAATTCTGTCTACCCAACTGCTTCCTGGAGGATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTCTGTTTTTAATTCTGTCTACCCAACTGCTTCCTGGAGGATT  844

seq1  GAACCTGTGACTTTTTCTTTCTCACATCACAAAAAGAATTTAAAAATCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTGACTTTTTCTTTCTCACATCACAAAAAGAATTTAAAAATCAA  894

seq1  AGTGAAATCAATTGAGAAATCTGTCATTTGAATTGAGAACATATTTTAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATCAATTGAGAAATCTGTCATTTGAATTGAGAACATATTTTAAT  944

seq1  GTAAACCAGTCTAGGTGAAGGCCAGTGATCATTCAGTACAGTAATAGGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAGTCTAGGTGAAGGCCAGTGATCATTCAGTACAGTAATAGGTA  994

seq1  TAATTTTATAAACTACAAAGACTAAACCATAATCACAGAAGGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATAAACTACAAAGACTAAACCATAATCACAGAAGGAATTC  1041