BAC Information

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BAC

Clone NameB6Ng01-291E01
Chromosome2 (Build37)
Map Location 100,574,276 - 100,575,366
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291E01.bB6Ng01-291E01.g
ACCGA088189GA088190
length1,1781,081
definitionB6Ng01-291E01.b B6Ng01-291E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggtgatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatctttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatcttttacttccttagttagagtcacgccgagatatttatattatt
tgtgactattgagaacgtgtgtttcctatttctttctcagcctgtttatc
tttgtgtagagaaagcattgacttgtttgagtatttatatcagctactca
caagctggttatcagtttaggagtccctggtgatttagtcctattatacc
tatcatatcactgcaaaggattttgactcctgtcatgatctgactcatgt
ggcaatgactcagctaatctcaagtcta
gaattcattttggatattacaagtctcgtaaaggttatgcgtgagacaga
tcctatgtgtaaagttgcctataaaatgaaagagacttgaatgtgtatac
aatgaagtagagtcaatacaactgttttatatattttagaacatcccatg
aatataaccagggatgtcaacttctgcttcatcatgtaagtctttgctta
aggggtttgtgttttcaaatcaagcttgctattttgcagttacatactgc
ttccttcctcatgcattatctctggagcattctctgctgagtacacagaa
cacatcaataggattcacaataataacttttaaggaaaacttgtattgtc
tgcatacatctgagaaattggctgagtttggagttgttaatgtcattatc
acacagttacaaagtgacttcagattgatttatctgggtttaaaccttgg
atccctgatgtagttgcacagtaataaaactgacattcgttagatcactg
tagcaaaacctacactagagcatagtgattttgttaaaagttcaatatat
tgattctgccttaacatttcattggtaacaattaatatccttatgattga
tataattctatcagaacacattgcaagaattcagctgtttggtttgaggt
tcataaacaagtaaaggaattgagcactgaatatgtatgctttgcataca
tatccataccagttttatgtcttaaatctacacactgtctcagttttata
aaaaaggcaatagcattgcttaattaccacctaatttattctggggagaa
tttatctatgcctaagagcaacaatcataattatgtaagcagctttgaac
aaccaatgccttggaattagaaattgacaaagtcaaaagagctttaataa
ttgtaattaggagaagaggaggtgtcagcagatgctgcattgcaaacttc
aaaccagtctaattattggcagcatgtcaccacctgcaagcaaatcacac
tgatcattgcagacattggagctctcactatattttctgttatactttag
ttttgtagtgaaagctgataagtgtagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100574276_100575366
seq2: B6Ng01-291E01.g_64_1144

seq1  GAATTCATTTTGGATATTACAAGTCTCGTAAAGGTTATGCGTGAGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGGATATTACAAGTCTCGTAAAGGTTATGCGTGAGACAGA  50

seq1  TCCTATGTGTAAAGTTGCCTATAAAATGAAAGAGACTTGAATGTGTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTGTAAAGTTGCCTATAAAATGAAAGAGACTTGAATGTGTATAC  100

seq1  AATGAAGTAGAGTCAATACAACTGTTTTATATATTTTAGAACATCCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTAGAGTCAATACAACTGTTTTATATATTTTAGAACATCCCATG  150

seq1  AATATAACCAGGGATGTCAACTTCTGCTTCATCATGTAAGTCTTTGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACCAGGGATGTCAACTTCTGCTTCATCATGTAAGTCTTTGCTTA  200

seq1  AGGGGTTTGTGTTTTCAAATCAAGCTTGCTATTTTGCAGTTACATACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTGTGTTTTCAAATCAAGCTTGCTATTTTGCAGTTACATACTGC  250

seq1  TTCCTTCCTCATGCATTATCTCTGGAGCATTCTCTGCTGAGTACACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCATGCATTATCTCTGGAGCATTCTCTGCTGAGTACACAGAA  300

seq1  CACATCAATAGGATTCACAATAATAACTTTTAAGGAAAACTTGTATTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAATAGGATTCACAATAATAACTTTTAAGGAAAACTTGTATTGTC  350

seq1  TGCATACATCTGAGAAATTGGCTGAGTTTGGAGTTGTTAATGTCATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATCTGAGAAATTGGCTGAGTTTGGAGTTGTTAATGTCATTATC  400

seq1  ACACAGTTACAAAGTGACTTCAGATTGATTTATCTGGGTTTAAACCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTACAAAGTGACTTCAGATTGATTTATCTGGGTTTAAACCTTGG  450

seq1  ATCCCTGATGTAGTTGCACAGTAATAAAACTGACATTCGTTAGATCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGATGTAGTTGCACAGTAATAAAACTGACATTCGTTAGATCACTG  500

seq1  TAGCAAAACCTACACTAGAGCATAGTGATTTTGTTAAAAGTTCAATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAACCTACACTAGAGCATAGTGATTTTGTTAAAAGTTCAATATAT  550

seq1  TGATTCTGCCTTAACATTTCATTGGTAACAATTAATATCCTTATGATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGCCTTAACATTTCATTGGTAACAATTAATATCCTTATGATTGA  600

seq1  TATAATTCTATCAGAACACATTGCAAGAATTCAGCTGTTTGGTTTGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCTATCAGAACACATTGCAAGAATTCAGCTGTTTGGTTTGAGGT  650

seq1  TCATAAACAAGTAAAGGAATTGAGCACTGAATATGTATGCTTTGCATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAAGTAAAGGAATTGAGCACTGAATATGTATGCTTTGCATACA  700

seq1  TATCCATACCAGTTTTATGTCTTAAATCTACACACTGTCTCAGTTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATACCAGTTTTATGTCTTAAATCTACACACTGTCTCAGTTTTATA  750

seq1  AAAAAGGCAATAGCATTGCTTAATTACCACCTAATTTATTCTGGGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCAATAGCATTGCTTAATTACCACCTAATTTATTCTGGGGAGAA  800

seq1  TTTATCTATGCCTAAGAGCAACAATCATAATTATGTAAGCAGCTTTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATGCCTAAGAGCAACAATCATAATTATGTAAGCAGCTTTGAAC  850

seq1  AACCAATGCCTTGGAATTAGAAATTGACAAAGTCAAAAGAGCTTTAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGCCTTGGAATTAGAAATTGACAAAGTCAAAAGAGCTTTAATAA  900

seq1  TTGTAATTAGGAGAAGAGGAGGTGTCAGCAGATGCTGCATTGCAAACTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTAGGAGAAGAGGAGGTGTCAGCAGATGCTGCATTGCAAACTTC  950

seq1  AAACCAGTCTAATTATTGGCAGCATGTCA-CACCTGCAAGCAAATCACAC  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAACCAGTCTAATTATTGGCAGCATGTCACCACCTGCAAGCAAATCACAC  1000

seq1  TGATCATTGCAAGAACATTGGAAGGCTCCTCACTATA-TATCTGTTAATT  1048
      |||||||||||   ||||||||  ||| ||||||||| | |||||||  |
seq2  TGATCATTGCA--GACATTGGA--GCT-CTCACTATATTTTCTGTTA--T  1043

seq1  ACTTTAGTTTTGTAGGTTGGAAAAGCTGATAAAGTGTAGAAGA  1091
      |||||||||||||||  ||  ||||||||| ||||||||||||
seq2  ACTTTAGTTTTGTAG--TG--AAAGCTGAT-AAGTGTAGAAGA  1081