BAC Information

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BAC

Clone NameB6Ng01-291F07
Chromosome2 (Build37)
Map Location 16,392,068 - 16,536,764
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC227588, LOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291F07.bB6Ng01-291F07.g
ACCGA088247GA088248
length1,1991,115
definitionB6Ng01-291F07.b B6Ng01-291F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,392,068 - 16,393,254)(16,535,655 - 16,536,764)
sequence
gaattcttcacagaaaatactttagtcatattttaagaatggtgtgccta
gcaaagaataaaaacctgaaactgtagaaacctgctggagatttactgta
gcaagttcaaatatatatataagcaaaaaccaaaccaaaccaaaccaaaa
caaaacaaaacctaacaagtaggattaaaaattatataggaaagcatatt
ttcaaagacttgtctgcaattagaaataccttggatttaaccccgtatac
atagatatttctatagctatgctgttttgtctaaactcatgctactgtaa
caaaatagcataaagcagggtagtttacaaaacattgatatattctcaaa
gttctggagaatggaagtctgagatatggctgccaacatgttacaggttt
cagaagtgatgtttccttgtgtggatatagtagacttccattgtattatt
acctgcaagaaataggcaaagaattttctgggaatcctttataaaagacc
caattctactcagagggactctcttctcatgacccctttactttctccat
ctccatctcctacagtcatcatctgaggctctagcattctaacatatgtg
ccttgaaggaacattttcaatccaccactcccattagcaatattgctatc
aactcaaggagatctattttgtgtgttcaagatttattgattttgaaaat
tccaaactagaatggtagatgaaatacaatgatggtgtttttagtacaaa
ccagaaaacagaatgtagtctctcttgaagttcacaaatacagagaattt
tagtattagtgaaaacagcacacacacacacacacacacacacacacaca
cacacactcacacacagtattactactttgatatagttacagtactggct
gatggagtatcgtgtcaatcttctgaaaatgattttaactgtatcagtac
tcaaatatacatgttaaattcctcattctgcctttggtgaaaccttacta
cctgtgtttttttcctccgtgactgttctctgccaaggtacgatgcccca
ctttgtgtgattttcctcatcaaacacaaggagtctgtcttgatccagac
agaattttctgtgctaacagaacatgtccaacatccttgaagtgaccaga
ttgtcacctgtctggtgtgggttctaaaggagagcacgcctgctgttta

gaattcacatatgttggagggaaataaactttccaagaccctgatctgta
ggtctctcaagcattattctctagagatgttattgttctccattcctttc
tcaatgattttattaaaattaaaccagaatatatgattagccactgaagt
gaggctataaggaatgttcttcaaaacagtgattcatttctccttcaatt
tactatccttttgaccagaacagcatttactaacgatggataaaataggt
atgtggcaaagtgaggcaggttaatagaactatagcacaagacactgact
ggatgctaaagctgcatctgcctgtgtaaaagacacaaccagagaaaaga
ggcctgtcaagcaggacaaagatctttcagtgcctcccagggaaagtgaa
tcaattcttagatgtgtcgtttttttattttttttttttttaaacatctt
ctaactgacatctaccaaaaaggataagaggaagccctgccattttcctt
acttgaaagaagacatttcccaaaatggagtgtagaaaggcataggaact
tccttgtaattgatcatttaatttccgaatgtattacttatctaaaagaa
atgcatgggaacaggacccatgtcttttttcacaaatacttcataccaat
cagaactttaagtgtgaggtatattttttcttcattttactttcaatatg
ataaagcagagaattagaagctcttcatgctgtgaggaattctctccatg
ggcattcttccgtggctcccactgaatatgtgagaggaggattaaatcaa
ggaacaagcagaattgggccatgaaagctaatctctctacacaaacacac
agacacagacagatacacacacacacacacacacacacacacacacacac
acacacacacacacagaattgtggggaaaattaacaaaatttcaatttta
tcaggatatcatcattcaaggagatgcccaagaatgcccataattttgaa
gaagaaaaattatgaagatgtttaatccggtcttgaaaaatgagaacgtt
gattacaaataagacaacaggaaagaagacaaagatctcctttatctgaa
tcacatcacttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16392068_16393254
seq2: B6Ng01-291F07.b_45_1243

seq1  GAATTCTTCACAGAAAATACTTTAGTCATATTTTAAGAATGGTGTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACAGAAAATACTTTAGTCATATTTTAAGAATGGTGTGCCTA  50

seq1  GCAAAGAATAAAAACCTGAAACTGTAGAAACCTGCTGGAGATTTACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATAAAAACCTGAAACTGTAGAAACCTGCTGGAGATTTACTGTA  100

seq1  GCAAGTTCAAATATATATATAAGCAAAAACCAAACCAAACCAAACCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCAAATATATATATAAGCAAAAACCAAACCAAACCAAACCAAAA  150

seq1  CAAAACAAAACCTAACAAGTAGGATTAAAAATTATATAGGAAAGCATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACCTAACAAGTAGGATTAAAAATTATATAGGAAAGCATATT  200

seq1  TTCAAAGACTTGTCTGCAATTAGAAATACCTTGGATTTAACCCCGTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACTTGTCTGCAATTAGAAATACCTTGGATTTAACCCCGTATAC  250

seq1  ATAGATATTTCTATAGCTATGCTGTTTTGTCTAAACTCATGCTACTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATATTTCTATAGCTATGCTGTTTTGTCTAAACTCATGCTACTGTAA  300

seq1  CAAAATAGCATAAAGCAGGGTAGTTTACAAAACATTGATATATTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGCATAAAGCAGGGTAGTTTACAAAACATTGATATATTCTCAAA  350

seq1  GTTCTGGAGAATGGAAGTCTGAGATATGGCTGCCAACATGTTACAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAGAATGGAAGTCTGAGATATGGCTGCCAACATGTTACAGGTTT  400

seq1  CAGAAGTGATGTTTCCTTGTGTGGATATAGTAGACTTCCATTGTATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGATGTTTCCTTGTGTGGATATAGTAGACTTCCATTGTATTATT  450

seq1  ACCTGCAAGAAATAGGCAAAGAATTTTCTGGGAATCCTTTATAAAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAGAAATAGGCAAAGAATTTTCTGGGAATCCTTTATAAAAGACC  500

seq1  CAATTCTACTCAGAGGGACTCTCTTCTCATGACCCCTTTACTTTCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTACTCAGAGGGACTCTCTTCTCATGACCCCTTTACTTTCTCCAT  550

seq1  CTCCATCTCCTACAGTCATCATCTGAGGCTCTAGCATTCTAACATATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCCTACAGTCATCATCTGAGGCTCTAGCATTCTAACATATGTG  600

seq1  CCTTGAAGGAACATTTTCAATCCACCACTCCCATTAGCAATATTGCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGGAACATTTTCAATCCACCACTCCCATTAGCAATATTGCTATC  650

seq1  AACTCAAGGAGATCTATTTTGTGTGTTCAAGATTTATTGATTTTGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGGAGATCTATTTTGTGTGTTCAAGATTTATTGATTTTGAAAAT  700

seq1  TCCAAACTAGAATGGTAGATGAAATACAATGATGGTGTTTTTAGTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTAGAATGGTAGATGAAATACAATGATGGTGTTTTTAGTACAAA  750

seq1  CCAGAAAACAGAATGTAGTCTCTCTTGAAGTTCACAAATACAGAGAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACAGAATGTAGTCTCTCTTGAAGTTCACAAATACAGAGAATTT  800

seq1  TAGTATTAGTGAAAACAGCACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGTGAAAACAGCACACACACACACACACACACACACACACACA  850

seq1  CACACACTCACACACAGTATTACTACTTTGATATAGTTACAGTACTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACACACAGTATTACTACTTTGATATAGTTACAGTACTGGCT  900

seq1  GATGGAGTATCGTGTCAATCTTCTGAAAATGATTTTAACTGTATCAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTATCGTGTCAATCTTCTGAAAATGATTTTAACTGTATCAGTAC  950

seq1  TCAAATATACATGTTTAAATTCTCATTCTGCCTTTGGTGAAA-CTTACTA  999
      ||||||||||||||| || | ||||||||||||||||||||| |||||||
seq2  TCAAATATACATGTTAAATTCCTCATTCTGCCTTTGGTGAAACCTTACTA  1000

seq1  CCTGTGTTTTTTTTCTCCGTGACTG-TCTCTGCCAAGGTACGATG-CTCA  1047
      ||||||||||||| ||||||||||| ||||||||||||||||||| | ||
seq2  CCTGTGTTTTTTTCCTCCGTGACTGTTCTCTGCCAAGGTACGATGCCCCA  1050

seq1  CTTTGTGTGATTTT-CTCATC-AACACAA-GAGTCTGTC-TGATCCAGAC  1093
      |||||||||||||| |||||| ||||||| ||||||||| ||||||||||
seq2  CTTTGTGTGATTTTCCTCATCAAACACAAGGAGTCTGTCTTGATCCAGAC  1100

seq1  AGAATTTTCTGGTTGCTAACAG-ACATGT-CAACAT-CTTG-AGTGACCA  1139
      |||||||||||  ||||||||| |||||| |||||| |||| ||||||||
seq2  AGAATTTTCTG--TGCTAACAGAACATGTCCAACATCCTTGAAGTGACCA  1148

seq1  AGAATTGTCACCTGGTCT-GTGTGGGTTCT-TAGGAG----CAGCTGCTG  1183
         |||||||||| |||| |||||||||||  |||||    |  ||||||
seq2  --GATTGTCACCT-GTCTGGTGTGGGTTCTAAAGGAGAGCACGCCTGCTG  1195

seq1  TTTA  1187
      ||||
seq2  TTTA  1199


seq1: chr2_16535655_16536764
seq2: B6Ng01-291F07.g_67_1181 (reverse)

seq1  AATGAAGTTGAATGTGA-TCAGATAAAGGAGATCTTTGTCCTTCCTTCCT  49
      ||||||||   |||||| ||||||||||||||||||||| |||| |||||
seq2  AATGAAGT--GATGTGATTCAGATAAAGGAGATCTTTGT-CTTCTTTCCT  47

seq1  GTTGTCTTATTTGGTAATTCAACGGTTCTCA-TTTTCAAGA-CGGAATAA  97
      |||||||||||| |||| ||||| ||||||| ||||||||| |||| |||
seq2  GTTGTCTTATTT-GTAA-TCAAC-GTTCTCATTTTTCAAGACCGGATTAA  94

seq1  ACATCTTCATAATTTT--CTCTTCAAA--TATGGGCAT--CTGGGCATCT  141
      ||||||||||||||||   ||||||||  |||||||||   |||||||||
seq2  ACATCTTCATAATTTTTCTTCTTCAAAATTATGGGCATTCTTGGGCATCT  144

seq1  CC-TGAATGATGATAATCTGATAAAATTGAAATTTTG-TAATTTTCCCCA  189
      || ||||||||||||  |||||||||||||||||||| ||||||||||||
seq2  CCTTGAATGATGATATCCTGATAAAATTGAAATTTTGTTAATTTTCCCCA  194

seq1  CAATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  244

seq1  TGTGTGTATCTGTCTGTGTCTGTGTGTTTGTGTAGAGAGATTAGCTTTCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATCTGTCTGTGTCTGTGTGTTTGTGTAGAGAGATTAGCTTTCA  294

seq1  TGGCCCAATTCTGCTTGTTCCTTGATTTAATCCTCCTCTCACATATTCAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAATTCTGCTTGTTCCTTGATTTAATCCTCCTCTCACATATTCAG  344

seq1  TGGGAGCCACGGAAGAATGCCCATGGAGAGAATTCCTCACAGCATGAAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCACGGAAGAATGCCCATGGAGAGAATTCCTCACAGCATGAAGA  394

seq1  GCTTCTAATTCTCTGCTTTATCATATTGAAAGTAAAATGAAGAAAAAATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAATTCTCTGCTTTATCATATTGAAAGTAAAATGAAGAAAAAATA  444

seq1  TACCTCACACTTAAAGTTCTGATTGGTATGAAGTATTTGTGAAAAAAGAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACACTTAAAGTTCTGATTGGTATGAAGTATTTGTGAAAAAAGAC  494

seq1  ATGGGTCCTGTTCCCATGCATTTCTTTTAGATAAGTAATACATTCGGAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTGTTCCCATGCATTTCTTTTAGATAAGTAATACATTCGGAAA  544

seq1  TTAAATGATCAATTACAAGGAAGTTCCTATGCCTTTCTACACTCCATTTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATCAATTACAAGGAAGTTCCTATGCCTTTCTACACTCCATTTT  594

seq1  GGGAAATGTCTTCTTTCAAGTAAGGAAAATGGCAGGGCTTCCTCTTATCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTCTTCTTTCAAGTAAGGAAAATGGCAGGGCTTCCTCTTATCC  644

seq1  TTTTTGGTAGATGTCAGTTAGAAGATGTTTAAAAAAAAAAAAAATAAAAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTAGATGTCAGTTAGAAGATGTTTAAAAAAAAAAAAAATAAAAA  694

seq1  AACGACACATCTAAGAATTGATTCACTTTCCCTGGGAGGCACTGAAAGAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACACATCTAAGAATTGATTCACTTTCCCTGGGAGGCACTGAAAGAT  744

seq1  CTTTGTCCTGCTTGACAGGCCTCTTTTCTCTGGTTGTGTCTTTTACACAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTGCTTGACAGGCCTCTTTTCTCTGGTTGTGTCTTTTACACAG  794

seq1  GCAGATGCAGCTTTAGCATCCAGTCAGTGTCTTGTGCTATAGTTCTATTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCAGCTTTAGCATCCAGTCAGTGTCTTGTGCTATAGTTCTATTA  844

seq1  ACCTGCCTCACTTTGCCACATACCTATTTTATCCATCGTTAGTAAATGCT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCACTTTGCCACATACCTATTTTATCCATCGTTAGTAAATGCT  894

seq1  GTTCTGGTCAAAAGGATAGTAAATTGAAGGAGAAATGAATCACTGTTTTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTCAAAAGGATAGTAAATTGAAGGAGAAATGAATCACTGTTTTG  944

seq1  AAGAACATTCCTTATAGCCTCACTTCAGTGGCTAATCATATATTCTGGTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTCCTTATAGCCTCACTTCAGTGGCTAATCATATATTCTGGTT  994

seq1  TAATTTTAATAAAATCATTGAGAAAGGAATGGAGAACAATAACATCTCTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAATAAAATCATTGAGAAAGGAATGGAGAACAATAACATCTCTA  1044

seq1  GAGAATAATGCTTGAGAGACCTACAGATCAGGGTCTTGGAAAGTTTATTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATGCTTGAGAGACCTACAGATCAGGGTCTTGGAAAGTTTATTT  1094

seq1  CCCTCCAACATATGTGAATTC  1110
      |||||||||||||||||||||
seq2  CCCTCCAACATATGTGAATTC  1115


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