BAC Information

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BAC

Clone NameB6Ng01-291G08
Chromosome2 (Build37)
Map Location 6,775,907 - 6,777,002
singlet/doubletsinglet
Overlap geneCugbp2
Upstream geneNudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291G08.bB6Ng01-291G08.g
ACCGA088293GA088294
length1,2051,097
definitionB6Ng01-291G08.b B6Ng01-291G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagaagaatttcaaaggagacttattgtgaatactttttaa
attattccacaaaacagaaataaaaggaacattgcacaattcactttagg
aggatacaattaccttgaaacctacactacataaagatccaacaaagaga
gtgaattatagaccaatttccctaatgaacacagatacaaaaattctcaa
tactgaacctgagaacacatcaaaaagccacccaccgtgaccaagtagac
ttcatcccagatatgcagggatggtacaacatacataaactgattaatat
aatctaccatataaacaaactgaaagacataacaacaacaacaacgataa
aacaacaacaacaaaaaaacatgatcacctcattagacaagaaaaggcct
ttgagaaaaaaatccaacactccatcatgataaaagtcctggagagacta
gtgatacaaagaacataataaaggcaatttaaatcaacttacatggagag
aaactcacagtaattccactaaaatcaggaacatgacaaggttagccact
ctttccacacctattatggagttcttgaaatcttagaaagagcaacagga
caactgaaggaaatcaagggaatacaaactgaaaaggaagaaatcaaagt
atatatttttactttcagcaaaataattggatacaaaagtgtcttagtca
gggtttctattcctgcacaaacatcatgaccaagaagcaagttggggagg
aaagggtttattcagcttacaattccatactgctgttcatcaccaaggaa
gtcaggactggaactcaagcagatcagaaagcaggagctgatgcagaggc
catggagggatgttctttactggcttgcttcccctggctggctcagcctg
ctctcttatagaaccaagactaccagcccagagatgacaccacccacaag
aggcctttccccctttgatactaattgagaaaatgccttacagttgtatc
tcatggaggcattccttaactgaagctctttctcttgtgatactcagctg
tgtcaagtgacccaaaactagccagtacaagagtaactcaatatcaatag
gcctctatataacaattgactaacgactgagaaagaatatgcaaccaacc
gttcaataggctcaatacaagtagcttaggccacttttaatatgccaagc
ctaga
gaattctttttccaaacttatggttgtgtattttatcaagagttttcttt
taagaatttactagatgctggaatttcactctgagagatgttcttccacc
tcgttaatatttgcatttgatttagatgaacagttgatttttttggcagg
tggaggttacctgtagctctgtagcttatggattagcaaaagctcacaag
cagtgtttggtccctatcctctccattagttggcagttttacacagtatc
ttttctagagttagaaccattcttaatctcctcaaatgagccatcggtta
gtcagtaggttaagtgaaatctaaacaaaatggtttatctacacagctca
tgtatgggacctgtttcacatcaggtgtcattacgctcccctttgatcct
ttctggggcgtagcttttcctcaagtggataagcttttagttggatcctg
cgtttctaggaaaccataagtttctatcatttctttaacactgagtggct
ataagagtttatagcaaagttagagaagaattcatgcatgtgttgatcca
aactactaacgatttcataccaaatattagcttgtagaactgcctttaca
cttggcaggagacaacactgtaacctaagaggatgtgattggagtggggt
tttcatgccccatgtgcatattgtattcttgctactgatgcaaacattat
ctataattacattttcaagtgactgaaaattgcaggctttgttgaacaaa
aatacagccaaagaatggaatgtatatccactctgtcctcattatagggc
tttcagaaatcagactataaggcccaataccatggctctcaactgtgtga
taccaactccattctctgatgtttgaacactttgtcaaaatgccgggttt
ccaatgatgatcgtgtaattgggaggggaatgctattattcctttagtgc
ttcatttgctgtattgtcatccaaatcaccgtagcatctactcacacaga
tcttctgtttctaggatgttaaaatataaaaccacaatttagttagcttt
aggcgcaaagggcattaagaaacatttgttaagtacagaatattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6775907_6777002
seq2: B6Ng01-291G08.g_66_1162 (reverse)

seq1  AAAAATA-TCTGTACCTAAACAAATGTTCTTTATTGCCCTTTGCGCCTAA  49
      ||||||| |||||| || ||||||||||  ||| ||||||||||||||||
seq2  AAAAATATTCTGTA-CTTAACAAATGTTTCTTAATGCCCTTTGCGCCTAA  49

seq1  AGCTAAACTAAATTGTGGTTTTATATTTT-ACATCCTAGAAACAGAAGAT  98
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCT-AACTAAATTGTGGTTTTATATTTTAACATCCTAGAAACAGAAGAT  98

seq1  CTGTGTGAGTAGATGCTACGGTGATTGGGATGACAATACAGCAAATGAAG  148
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGTGAGTAGATGCTACGGTGATTTGGATGACAATACAGCAAATGAAG  148

seq1  CACTAAAGGAATAATAGCATTCCCCT-CCAATTACACGATCATCATTGGA  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACTAAAGGAATAATAGCATTCCCCTCCCAATTACACGATCATCATTGGA  198

seq1  AACCCGGCATTTTGACAAAGTGTTCAAACATCAGAGAATGGAGTTGGTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGGCATTTTGACAAAGTGTTCAAACATCAGAGAATGGAGTTGGTAT  248

seq1  CACACAGTTGAGAGCCATGGTATTGGGCCTTATAGTCTGATTTCTGAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTTGAGAGCCATGGTATTGGGCCTTATAGTCTGATTTCTGAAAG  298

seq1  CCCTATAATGAGGACAGAGTGGATATACATTCCATTCTTTGGCTGTATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAATGAGGACAGAGTGGATATACATTCCATTCTTTGGCTGTATTT  348

seq1  TTGTTCAACAAAGCCTGCAATTTTCAGTCACTTGAAAATGTAATTATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACAAAGCCTGCAATTTTCAGTCACTTGAAAATGTAATTATAGA  398

seq1  TAATGTTTGCATCAGTAGCAAGAATACAATATGCACATGGGGCATGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGCATCAGTAGCAAGAATACAATATGCACATGGGGCATGAAAA  448

seq1  CCCCACTCCAATCACATCCTCTTAGGTTACAGTGTTGTCTCCTGCCAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCAATCACATCCTCTTAGGTTACAGTGTTGTCTCCTGCCAAGT  498

seq1  GTAAAGGCAGTTCTACAAGCTAATATTTGGTATGAAATCGTTAGTAGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCAGTTCTACAAGCTAATATTTGGTATGAAATCGTTAGTAGTTT  548

seq1  GGATCAACACATGCATGAATTCTTCTCTAACTTTGCTATAAACTCTTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAACACATGCATGAATTCTTCTCTAACTTTGCTATAAACTCTTATA  598

seq1  GCCACTCAGTGTTAAAGAAATGATAGAAACTTATGGTTTCCTAGAAACGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGTGTTAAAGAAATGATAGAAACTTATGGTTTCCTAGAAACGC  648

seq1  AGGATCCAACTAAAAGCTTATCCACTTGAGGAAAAGCTACGCCCCAGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAACTAAAAGCTTATCCACTTGAGGAAAAGCTACGCCCCAGAAA  698

seq1  GGATCAAAGGGGAGCGTAATGACACCTGATGTGAAACAGGTCCCATACAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAGGGGAGCGTAATGACACCTGATGTGAAACAGGTCCCATACAT  748

seq1  GAGCTGTGTAGATAAACCATTTTGTTTAGATTTCACTTAACCTACTGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGTAGATAAACCATTTTGTTTAGATTTCACTTAACCTACTGACT  798

seq1  AACCGATGGCTCATTTGAGGAGATTAAGAATGGTTCTAACTCTAGAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGATGGCTCATTTGAGGAGATTAAGAATGGTTCTAACTCTAGAAAAG  848

seq1  ATACTGTGTAAAACTGCCAACTAATGGAGAGGATAGGGACCAAACACTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGTAAAACTGCCAACTAATGGAGAGGATAGGGACCAAACACTGC  898

seq1  TTGTGAGCTTTTGCTAATCCATAAGCTACAGAGCTACAGGTAACCTCCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCTTTTGCTAATCCATAAGCTACAGAGCTACAGGTAACCTCCAC  948

seq1  CTGCCAAAAAAATCAACTGTTCATCTAAATCAAATGCAAATATTAACGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAAAAATCAACTGTTCATCTAAATCAAATGCAAATATTAACGAG  998

seq1  GTGGAAGAACATCTCTCAGAGTGAAATTCCAGCATCTAGTAAATTCTTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAACATCTCTCAGAGTGAAATTCCAGCATCTAGTAAATTCTTAA  1048

seq1  AAGAAAACTCTTGATAAAATACACAACCATAAGTTTGGAAAAAGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTCTTGATAAAATACACAACCATAAGTTTGGAAAAAGAATTC  1097