BAC Information

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BAC

Clone NameB6Ng01-291G18
Chromosome2 (Build37)
Map Location 107,954,386 - 108,107,721
singlet/doubletdoublet
Overlap genenone
Upstream geneKcna4
Downstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291G18.bB6Ng01-291G18.g
ACCGA088309GA088310
length1,176861
definitionB6Ng01-291G18.b B6Ng01-291G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,106,540 - 108,107,721)(107,954,386 - 107,955,229)
sequence
gaattcagtcaagaaaacaatagcaatatgatgattgttcttaaagtttt
caagccagaaaataagttaatcacttcagctttcagttcggcctatcatt
agctctgggtctgtgtcaatgttggctcattttataaattttattcctca
tatagaatgataaattgatctcaatacccctgaactgatattaataaaag
ttaatggtatgtaatttgtctagcatgcaaaccacataagtgtatcctat
ggaaaggaggcagcagggtgaacagtcagatatgactcgatatgtgcatg
tctgcatgcatatacacagagacacagatattcctccaaatcagcacaga
agtgttattcaaaatagaattaaacagttagcctatttaaacaaacactg
gcatgttttagatatattttcatggcttacaccagatacctaaaaagaac
attttaatatgcaagtatttagttcatatatcattctgtcattgagaaaa
acacagaagatcaaatcagctcctatcatggtgactgcaaagctgagaat
agggtcagtgtagggttaaggataaaatattcctgtgaatccatctccaa
tgaaatactttccagtcaaagctcactacctaatgtttcagcaacttccc
acaatcccaacagcacctgaagaccaaacctcaaacacatggacattttc
agggaacatttgatatctaagccatagcatgatatttgcaattatgtgtt
atatgaaaattttctgctaatgatgtaaaggaatatcattattgctcttt
cctttactgtcctagattgttttattagctattttactgaaatagtgtat
cattacaatttttattatgaaaatatattgcatgtttatggattatccaa
aggagtgagagagagagagagagagagagagagagagagagagagagaga
ttggggggaaagaatctcctttcctttctttcctttctatatcctgcttc
tctgccctattcttgtaggggggcattagtattttcttacagggtgacag
atctgcagctttcattgtctctttgagacactaaacgagatcagcactgt
ccttagtccagattctctcaaactcacttctcttctttccggtccatcag
gcacatggacaagcctgaacagccat
gaattcaataatgacacagaaagatgagaaaagacctgaggaatggctta
atggttaataattcccactggacatttgtgaggccagaattcatatttca
gtatgaagctgacaagcagacatcaaaaaaaattctgtaagtttatatcc
agtgattttatgatctcttctagaatttttgtatgtaaagcaagatgcat
tcaaacatgtacacatggatgagcacatgggcacactcacacacacacac
acacacacacacacacacacacacacacacagagagagagagagagagag
agagagagagagagagagagagagagagaatttttaaatgtaaagaaatg
actgagaagacaacctagtagacaaaagcatctattgccatatgccatac
aacctgagtttgatcatttgatcttaggggcctcatgagagaagaaggaa
attacctctacatgtatgccatggaacgaacacatgtgccctttctccat
aataaataaattcaatttagaaaaaaatatttagaaaagtataattaaaa
ttttgtacaaggtggaatctcagggttgttttgatttgcatttccctgat
gattaaggatgttgaatatttttcaggcgcttctcagccatttgctgttt
ctcaggtgagaattctttgtttaactctgagccccatttttaatggggtt
atttgattttctggagtccaccttcttgagttctttatatatattggata
ttagtgccatatctgatttagggattgggtaaagatcctttcccaatctg
ctgggggcctttttgtcttattgacggtgtcttttgccttacagaagctt
tgcaattttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108106540_108107721
seq2: B6Ng01-291G18.b_47_1222 (reverse)

seq1  ATGGCTGTTCAGGCCTTGGTCCATGCTGCCTTGATGAGAAGGG--AGAGG  48
      ||||||||||||||  | ||||||| |||| ||||| ||  ||  ||| |
seq2  ATGGCTGTTCAGGC--TTGTCCATG-TGCC-TGATG-GACCGGAAAGAAG  45

seq1  AGAAGTGGTGTTTGGAGGAGATCCTTGGCT-AGGACAGTGTGCCTGATCT  97
      |||||| | |||||   ||||  || | || |||||||||   |||||||
seq2  AGAAGT-GAGTTTG--AGAGAATCTGGACTAAGGACAGTG---CTGATCT  89

seq1  TGGTTAGTGTCTCAAA-AGACAATGAAAGCTTGCAGATCTTGTCACCCTG  146
       | ||||||||||||| ||||||||||||| |||||||| ||||||||||
seq2  CGTTTAGTGTCTCAAAGAGACAATGAAAGC-TGCAGATC-TGTCACCCTG  137

seq1  T-AGAAAATACTAATGCCCCCTAACAAG-ATAAGGCAGAGAAGCAGGATA  194
      | |||||||||||||||||||  ||||| ||| |||||||||||||||||
seq2  TAAGAAAATACTAATGCCCCCCTACAAGAATAGGGCAGAGAAGCAGGATA  187

seq1  TAGAAAGGGAAGAAAGGAAAGGAGATTCTTT-CCCCCATTCTCTCTCTCT  243
      |||||||| |||||||||||||||||||||| |||||| |||||||||||
seq2  TAGAAAGGAAAGAAAGGAAAGGAGATTCTTTCCCCCCAATCTCTCTCTCT  237

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCCTTTGGATAATCC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCCTTTGGATAATCC  287

seq1  ATAAACATGCAATATATTTTCATAATAAAAATTGTAATGATACACTATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGCAATATATTTTCATAATAAAAATTGTAATGATACACTATTT  337

seq1  CAGTAAAATAGCTAATAAAACAATCTAGGACAGTAAAGGAAAGAGCAATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATAGCTAATAAAACAATCTAGGACAGTAAAGGAAAGAGCAATA  387

seq1  ATGATATTCCTTTACATCATTAGCAGAAAATTTTCATATAACACATAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTCCTTTACATCATTAGCAGAAAATTTTCATATAACACATAATT  437

seq1  GCAAATATCATGCTATGGCTTAGATATCAAATGTTCCCTGAAAATGTCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATCATGCTATGGCTTAGATATCAAATGTTCCCTGAAAATGTCCA  487

seq1  TGTGTTTGAGGTTTGGTCTTCAGGTGCTGTTGGGATTGTGGGAAGTTGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGAGGTTTGGTCTTCAGGTGCTGTTGGGATTGTGGGAAGTTGCT  537

seq1  GAAACATTAGGTAGTGAGCTTTGACTGGAAAGTATTTCATTGGAGATGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTAGGTAGTGAGCTTTGACTGGAAAGTATTTCATTGGAGATGGA  587

seq1  TTCACAGGAATATTTTATCCTTAACCCTACACTGACCCTATTCTCAGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGAATATTTTATCCTTAACCCTACACTGACCCTATTCTCAGCTT  637

seq1  TGCAGTCACCATGATAGGAGCTGATTTGATCTTCTGTGTTTTTCTCAATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCACCATGATAGGAGCTGATTTGATCTTCTGTGTTTTTCTCAATG  687

seq1  ACAGAATGATATATGAACTAAATACTTGCATATTAAAATGTTCTTTTTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGATATATGAACTAAATACTTGCATATTAAAATGTTCTTTTTAG  737

seq1  GTATCTGGTGTAAGCCATGAAAATATATCTAAAACATGCCAGTGTTTGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGGTGTAAGCCATGAAAATATATCTAAAACATGCCAGTGTTTGTT  787

seq1  TAAATAGGCTAACTGTTTAATTCTATTTTGAATAACACTTCTGTGCTGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGCTAACTGTTTAATTCTATTTTGAATAACACTTCTGTGCTGAT  837

seq1  TTGGAGGAATATCTGTGTCTCTGTGTATATGCATGCAGACATGCACATAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAATATCTGTGTCTCTGTGTATATGCATGCAGACATGCACATAT  887

seq1  CGAGTCATATCTGACTGTTCACCCTGCTGCCTCCTTTCCATAGGATACAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCATATCTGACTGTTCACCCTGCTGCCTCCTTTCCATAGGATACAC  937

seq1  TTATGTGGTTTGCATGCTAGACAAATTACATACCATTAACTTTTATTAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGTTTGCATGCTAGACAAATTACATACCATTAACTTTTATTAAT  987

seq1  ATCAGTTCAGGGGTATTGAGATCAATTTATCATTCTATATGAGGAATAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCAGGGGTATTGAGATCAATTTATCATTCTATATGAGGAATAAA  1037

seq1  ATTTATAAAATGAGCCAACATTGACACAGACCCAGAGCTAATGATAGGCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAAATGAGCCAACATTGACACAGACCCAGAGCTAATGATAGGCC  1087

seq1  GAACTGAAAGCTGAAGTGATTAACTTATTTTCTGGCTTGAAAACTTTAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAAGCTGAAGTGATTAACTTATTTTCTGGCTTGAAAACTTTAAG  1137

seq1  AACAATCATCATATTGCTATTGTTTTCTTGACTGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||
seq2  AACAATCATCATATTGCTATTGTTTTCTTGACTGAATTC  1176

seq1: chr2_107954386_107955229
seq2: B6Ng01-291G18.g_68_913

seq1  GAATTCAATAATGACACAGAAAGATGAGAAAAGACCTGAGGAATGGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATGACACAGAAAGATGAGAAAAGACCTGAGGAATGGCTTA  50

seq1  ATGGTTAATAATTCCCACTGGACATTTGTGAGGCCAGAATTCATATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATAATTCCCACTGGACATTTGTGAGGCCAGAATTCATATTTCA  100

seq1  GTATGAAGCTGACAAGCAGACATCAAAAAAAATTCTGTAAGTTTATATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGCTGACAAGCAGACATCAAAAAAAATTCTGTAAGTTTATATCC  150

seq1  AGTGATTTTATGATCTCTTCTAGAATTTTTGTATGTAAAGCAAGATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTATGATCTCTTCTAGAATTTTTGTATGTAAAGCAAGATGCAT  200

seq1  TCAAACATGTACACATGGATGAGCACATGGGCACACTCACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATGTACACATGGATGAGCACATGGGCACACTCACACACACACAC  250

seq1  ACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTTTAAATGTAAAGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTTTAAATGTAAAGAAATG  350

seq1  ACTGAGAAGACAACCTAGTAGACAAAAGCATCTATTGCCATATGCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGACAACCTAGTAGACAAAAGCATCTATTGCCATATGCCATAC  400

seq1  AACCTGAGTTTGATCATTTGATCTTAGGGGCCTCATGAGAGAAGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGTTTGATCATTTGATCTTAGGGGCCTCATGAGAGAAGAAGGAA  450

seq1  ATTACCTCTACATGTATGCCATGGAACGAACACATGTGCCCTTTCTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCTACATGTATGCCATGGAACGAACACATGTGCCCTTTCTCCAT  500

seq1  AATAAATAAATTCAATTTAGAAAAAAATATTTAGAAAAGTATAATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATTCAATTTAGAAAAAAATATTTAGAAAAGTATAATTAAAA  550

seq1  TTTTGTACAAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACAAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGAT  600

seq1  GATTAAGGATGTTGAATATTTTTCAGGCGCTTCTCAGCCATTTGGTGTTT  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATTAAGGATGTTGAATATTTTTCAGGCGCTTCTCAGCCATTTGCTGTTT  650

seq1  CTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTT  700
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCAGGTGAGAATTCTTTGTTTAACTCTGAGCCCCATTTTTAATGGGGTT  700

seq1  ATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA  750

seq1  TTAGTGCCATATCTGATTTA-GGATT-GGTAAAGATCCTTTCCCAATCTG  798
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TTAGTGCCATATCTGATTTAGGGATTGGGTAAAGATCCTTTCCCAATCTG  800

seq1  CTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAA  844
      |||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAA  846