BAC Information

Click to search

BAC

Clone NameB6Ng01-291I15
Chromosome2 (Build37)
Map Location 56,556,777 - 56,701,122
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I15.bB6Ng01-291I15.g
ACCGA088397GA088398
length1,1161,077
definitionB6Ng01-291I15.b B6Ng01-291I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,556,777 - 56,557,894)(56,700,085 - 56,701,122)
sequence
gaattcttcagccaatagcatatggcagagcaatttaagaaggcttccaa
gtctgcattataaaggacaacccatcttcatcagataacccatatttgaa
accatgttttgctatgtgaggagcccacatattctaatatcattctggag
ctaaagaagctaaagtatatagacagatatcagtaggtgttcctatcacc
agcctagtcctttagacatcccgtttcagtgctaaatgtgtgactaagtc
acttttgtgtgagttgtagttcactttgtattaatacaaagagaatgcag
atgcagtgacaggagcacctactgatatctgtctatgtactttagcttgt
acagactgtatctcattacctttaattgcatgaaaataagtacgttttag
tctctgtagttaaaagattatattcactgacagttcatttggtgaaagag
taattttatgataaatgaaatacataatagaaataaggccgtctgacaaa
gaaattcaactttcagaaataacaatgcaaacaatagccaatagatgtac
caaaaacatacacttttattcatttagtcaaataaatgaaaattaatatt
aaaatatcagaattttccatactggaaaaggattgaatatgttttagttg
accaatgaatgatatacataggtatatttgtaagactagatgaacatatc
ataccaaaggccaaactgctactacccataacattgaaaaatgagcacac
acttaggatgaaaaccaacaatctttcatttattctcagatatctccttc
agttactagtgaaagatgtttactatagcattatttaaagtgaaaaaaag
agagaacatgaatgtgcaataaagagaaatggctatatacattgggatta
agcactctgaagaatatgacaacctaatatggaaatatttaagtaaagtt
taatagagaaggaagtttattatataatattaacttgaagttgtaaaatt
tgcatggtagtcctacttgacataagtttttaaaatacataacttattgt
acaatatgttataataatgtgattctgggataagattttttatttattct
agttactatttttgct
gaattcaattccaactgtacctgttttgataacactttgtccggcttcct
ttttttttttttttcctgtgctatttctcactcttacatttctcattcta
tgcaattactaaattaactcctggcctttaaatgcttgtctcagggcctt
cgctgggaaacatctaaggtaagagccttgaacttaggtaaaatgaggac
tgtttgactcgtcgggtcaatttgaggatttgaagagatggtttcaatag
aatgtgtgggataaaagttttattagattaccttcaatcataatatggaa
taaagagattttttttgatgtgacagaatttctagcatttttgtatattg
agaaaatgaaacgaagagaggaaattgtggtctagaagagaaaaaggaga
atttatagactaaaatacttatttggaaaagaataaaaaaggaatagaaa
agccctagtagggttcgggatgtaccatatgtattcaagcaaaaacagca
gaaatgattagatttgagggggtagtaggagactataaaatgacttttta
ttttattttatttttatttttatttctgtctatatggagttatgatttga
atgtaaaatgtattttataggtttatttatttgaacactgagtccaagct
tgttttttcaaaggtcatggaacattttagacatatgtattaactggagg
acacagaccacagagagtgagcccttgagggttataaccaagtcctactg
tcactttagcctgtctgtttcctcttcagtaagatgtaaacaatccaggc
ccttatatttccttttcacaatgatccaagtcaattcagtttgcaatgcc
tttccgccaccatagtagacctgacagcctgctaaatttagtgagctaaa
aagaaaatcctttcctcccctaaaagttttcttttgtccatgcctttatg
ttcagtgttggagaaaaataaagcctagcaccagaaaaatggtactacgg
aggaatgttcacctgcctcttgaataaaccctgaactattcatggatctg
ttgaaatgggggatataagggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56556777_56557894
seq2: B6Ng01-291I15.b_46_1161

seq1  GAATTCTTCAGCCAATAGCATATGGCAGAGCAATTTAAGAAGGCTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCCAATAGCATATGGCAGAGCAATTTAAGAAGGCTTCCAA  50

seq1  GTCTGCATTATAAAGGACAACCCATCTTCATCAGATAACCCATATTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATTATAAAGGACAACCCATCTTCATCAGATAACCCATATTTGAA  100

seq1  ACCATGTTTTGCTATGTGAGGAGCCCACATATTCTAATATCATTCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTTGCTATGTGAGGAGCCCACATATTCTAATATCATTCTGGAG  150

seq1  CTAAAGAAGCTAAAGTATATAGACAGATATCAGTAGGTGTTCCTATCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGCTAAAGTATATAGACAGATATCAGTAGGTGTTCCTATCACC  200

seq1  AGCCTAGTCCTTTAGACATCCCGTTTCAGTGCTAAATGTGTGACTAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGTCCTTTAGACATCCCGTTTCAGTGCTAAATGTGTGACTAAGTC  250

seq1  ACTTTTGTGTGAGTTGTAGTTCACTTTGTATTAATACAAAGAGAATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGTGAGTTGTAGTTCACTTTGTATTAATACAAAGAGAATGCAG  300

seq1  ATGCAGTGACAGGAGCACCTACTGATATCTGTCTATGTACTTTAGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGACAGGAGCACCTACTGATATCTGTCTATGTACTTTAGCTTGT  350

seq1  ACAGACTGTATCTCATTACCTTTAATTGCATGAAAATAAGTACGTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTATCTCATTACCTTTAATTGCATGAAAATAAGTACGTTTTAG  400

seq1  TCTCTGTAGTTAAAAGATTATATTCACTGACAGTTCATTTGGTGAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAGTTAAAAGATTATATTCACTGACAGTTCATTTGGTGAAAGAG  450

seq1  TAATTTTATGATAAATGAAATACATAATAGAAATAAGGCCGTCTGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATGATAAATGAAATACATAATAGAAATAAGGCCGTCTGACAAA  500

seq1  GAAATTCAACTTTCAGAAATAACAATGCAAACAATAGCCAATAGATGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAACTTTCAGAAATAACAATGCAAACAATAGCCAATAGATGTAC  550

seq1  CAAAAACATACACTTTTATTCATTTAGTCAAATAAATGAAAATTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACATACACTTTTATTCATTTAGTCAAATAAATGAAAATTAATATT  600

seq1  AAAATATCAGAATTTTCCATACTGGAAAAGGATTGAATATGTTTTAGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAGAATTTTCCATACTGGAAAAGGATTGAATATGTTTTAGTTG  650

seq1  ACCAATGAATGATATACATAGGTATATTTGTAAGACTAGATGAACATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAATGATATACATAGGTATATTTGTAAGACTAGATGAACATATC  700

seq1  ATACCAAAGGCCAAACTGCTACTACCCATAACATTGAAAAATGAGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGGCCAAACTGCTACTACCCATAACATTGAAAAATGAGCACAC  750

seq1  ACTTAGGATGAAAACCAACAATCTTTCATTTATTCTCAGATATCTCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATGAAAACCAACAATCTTTCATTTATTCTCAGATATCTCCTTC  800

seq1  AGGTTACTAGTGAAAGATGTTTACTATAGCATTATTTAAAGTGAAAAAAA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTTACTAGTGAAAGATGTTTACTATAGCATTATTTAAAGTGAAAAAAA  849

seq1  GAGAGAACATGAATGTGCAATAAAGAGAAATGGCTATATACATTGGGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACATGAATGTGCAATAAAGAGAAATGGCTATATACATTGGGATT  899

seq1  AAGCACTCTGAAGAATATGACAACCTAATATGGAAATATTTAAGTAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTGAAGAATATGACAACCTAATATGGAAATATTTAAGTAAAGT  949

seq1  TTAATAGAGAAGGAAGTTTATTATATAATATTAACTTGAAGTTGTAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAGAAGGAAGTTTATTATATAATATTAACTTGAAGTTGTAAAAT  999

seq1  TTGCATGGTAGTCCTACTTGACATAAGTTTTTAAAATACATAACTTA-TG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGCATGGTAGTCCTACTTGACATAAGTTTTTAAAATACATAACTTATTG  1049

seq1  TACATATTGTTATAATAATTGTTGATTCTGGGATAAGATATTTTATTTAT  1099
      ||||   ||||||||||||   ||||||||||||||||| ||||||||||
seq2  TACAATATGTTATAATAAT--GTGATTCTGGGATAAGATTTTTTATTTAT  1097

seq1  TCTAGTTACTATTTTTGCT  1118
      |||||||||||||||||||
seq2  TCTAGTTACTATTTTTGCT  1116

seq1: chr2_56700085_56701122
seq2: B6Ng01-291I15.g_66_1142 (reverse)

seq1  CACCCCC---TATAT-CCCCATTTC-ACAG-TCC-TAGATAG-TCA-GGT  41
      |||||||   ||||| ||||||||| |||| ||| |  |||| ||| |||
seq2  CACCCCCCCTTATATCCCCCATTTCAACAGATCCATGAATAGTTCAGGGT  50

seq1  TTAT--CAGA-GCA-GTGAACCTT-CTCCGTAGTACCA-TTTTCT-GTGC  84
      ||||   ||| ||| |||||| || ||||||||||||| |||||| ||||
seq2  TTATTCAAGAGGCAGGTGAACATTCCTCCGTAGTACCATTTTTCTGGTGC  100

seq1  TA-GCTTTATTTCT---CAACACTG-ACATAAA-GCAT-GACAAA--GAA  125
      || ||||||||| |   |||||||| ||||||| |||| ||||||   ||
seq2  TAGGCTTTATTTTTCTCCAACACTGAACATAAAGGCATGGACAAAAGAAA  150

seq1  ACTTT--AGGGAGG-AAGGATTT--CTTTTAGCTCACT-AATTTAGCA-G  168
      |||||   |||||| ||||||||   |||||||||||| ||||||||| |
seq2  ACTTTTAGGGGAGGAAAGGATTTTCTTTTTAGCTCACTAAATTTAGCAGG  200

seq1  CTGTCA-GTCTACTATGGT-GCGG-AAGGCATTGC-AACTGAATTGACTT  214
      |||||| |||||||||||| |||| |||||||||| ||||||||||||||
seq2  CTGTCAGGTCTACTATGGTGGCGGAAAGGCATTGCAAACTGAATTGACTT  250

seq1  GGATCATTGTGAAA--GGAATATAA-GGCCTGGATTGTTTACATCTTACT  261
      ||||||||||||||  | ||||||| ||||||||||||||||||||||||
seq2  GGATCATTGTGAAAAGGAAATATAAGGGCCTGGATTGTTTACATCTTACT  300

seq1  GAAGAGGAAACAGACAGGCTAAAGTGACAGTAGGACTTGGTTATAACCCT  311
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAACAGACAGGCTAAAGTGACAGTAGGACTTGGTTATAACCCT  350

seq1  CAAGGGCTCACTCTCTGTGGTCTGTGTCCTCCAGTTAATACATATGTCTA  361
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTCACTCTCTGTGGTCTGTGTCCTCCAGTTAATACATATGTCTA  400

seq1  AAATGTTCCATGACCTTTGAAAAAACAAGCTTGGACTCAGTGTTCAAATA  411
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCCATGACCTTTGAAAAAACAAGCTTGGACTCAGTGTTCAAATA  450

seq1  AATAAACCTATAAAATACATTTTACATTCAAATCATAACTCCATATAGAC  461
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCTATAAAATACATTTTACATTCAAATCATAACTCCATATAGAC  500

seq1  AGAAATAAAAATAAAAATAAAATAAAATAAAAAGTCATTTTATAGTCTCC  511
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAATAAAAATAAAATAAAATAAAAAGTCATTTTATAGTCTCC  550

seq1  TACTACCCCCTCAAATCTAATCATTTCTGCTGTTTTTGCTTGAATACATA  561
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCCCCTCAAATCTAATCATTTCTGCTGTTTTTGCTTGAATACATA  600

seq1  TGGTACATCCCGAACCCTACTAGGGCTTTTCTATTCCTTTTTTATTCTTT  611
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATCCCGAACCCTACTAGGGCTTTTCTATTCCTTTTTTATTCTTT  650

seq1  TCCAAATAAGTATTTTAGTCTATAAATTCTCCTTTTTCTCTTCTAGACCA  661
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAAGTATTTTAGTCTATAAATTCTCCTTTTTCTCTTCTAGACCA  700

seq1  CAATTTCCTCTCTTCGTTTCATTTTCTCAATATACAAAAATGCTAGAAAT  711
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTCTCTTCGTTTCATTTTCTCAATATACAAAAATGCTAGAAAT  750

seq1  TCTGTCACATCAAAAAAAATCTCTTTATTCCATATTATGATTGAAGGTAA  761
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACATCAAAAAAAATCTCTTTATTCCATATTATGATTGAAGGTAA  800

seq1  TCTAATAAAACTTTTATCCCACACATTCTATTGAAACCATCTCTTCAAAT  811
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAAACTTTTATCCCACACATTCTATTGAAACCATCTCTTCAAAT  850

seq1  CCTCAAATTGACCCGACGAGTCAAACAGTCCTCATTTTACCTAAGTTCAA  861
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATTGACCCGACGAGTCAAACAGTCCTCATTTTACCTAAGTTCAA  900

seq1  GGCTCTTACCTTAGATGTTTCCCAGCGAAGGCCCTGAGACAAGCATTTAA  911
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTACCTTAGATGTTTCCCAGCGAAGGCCCTGAGACAAGCATTTAA  950

seq1  AGGCCAGGAGTTAATTTAGTAATTGCATAGAATGAGAAATGTAAGAGTGA  961
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGAGTTAATTTAGTAATTGCATAGAATGAGAAATGTAAGAGTGA  1000

seq1  GAAATAGCACAGGAAAAAAAAAAAAAAAGGAAGCCGGACAAAGTGTTATC  1011
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCACAGGAAAAAAAAAAAAAAAGGAAGCCGGACAAAGTGTTATC  1050

seq1  AAAACAGGTACAGTTGGAATTGAATTC  1038
      |||||||||||||||||||||||||||
seq2  AAAACAGGTACAGTTGGAATTGAATTC  1077