BAC Information

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BAC

Clone NameB6Ng01-291L06
Chromosome2 (Build37)
Map Location 83,894,901 - 84,022,853
singlet/doubletdoublet
Overlap geneLOC383725
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291L06.bB6Ng01-291L06.g
ACCGA088523GA088524
length9841,171
definitionB6Ng01-291L06.b B6Ng01-291L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,894,901 - 83,895,884)(84,021,671 - 84,022,853)
sequence
gaattcagtgattgacgtcattttctgctcacagggatcaagttacattc
atttaagaaatgttgtatgtattaagataatctatccatgaagtcattca
tcaactgtttcaacaaacaatggttctgcttggagtgtggcacagacgtt
aggtgagggtaagattctggttcattggctgtgatggttttgaaaagcat
tcatatcagaataagagtaacttataaagtcctcttcttcaaaattgatt
acaataattataaatatcaagcaaagccttcagtctcactttttgctgtt
ctcttacaagccacctcccaaattaattgtctacatttcttttggctgta
taaaattttttgaaatatgtaagctgttctgaaaaccatagtatagggta
aaaacatcaaattcacaatcctactaatagagaggctgagaaaggaaaag
catgacttcaagaccattatgtggcccacagcaagaccatgtcatgtaca
aacactcagaaagtatatatggattgaacagtatttgacctatttctccc
attaccaaattagagagaccacgtgatgacagccgacaaattctaattcc
tcatattttttgaatttcaatcagttagggtttgttggtaatattaattt
tcatattaagagatattaaggaaaggtgattgttcttcctgttaattttc
ttgttagagatggaatgatgtttgtgtgggtttgttgaaagattactttc
ttgcttcttctagggtgtagtttcactccttgtgttggtgttttccatct
attatcctttgtagggctggatttgtggaaagatattgtgtaaattggtt
ttgtcatggaatatcttgttttctccgtttatgggtgaatgagagtctgt
tatttgaccttttccccttacttcttttaaaattctttgttagtgcattt
ggtgtttgattatttatgtgaacagaggaatttc
gaattctctatgaccaggctggcctccaactaacagagatctgcctgcct
ctgcatcctaagtgctggatttaaaggcgtacactgccaagcctggtata
gtctatgtttactgagaaagaggacatttttgacaaagaaaatagatact
agaacaaataagtagacaactctattattagaaatattataatggtaatt
agaatggatttgggaatctgcacagaagaggaaacatgaagttcagaaaa
cctacccaaaggggttatttcttatttacatctagacaagtaagtgagta
tattttgaaaggtggaaagaccagaaagaacctctagaaagaggaaataa
cttactttcacacaaataattgaaggagcaaaacgtataaagtaaattgt
aagaagctcaaaagaaatggaaaagaaacttcttgaaactgagatttaag
tagaggctaaagatgaagttgacaactattgcaaagtccttatgtgtctt
gccaagaagactacatgttctgtagctaatggaaaactactagaaagtgt
taaacagagacagacttgtttggcaaaggaataaagagacagactaatta
gggaattactgctttttccagaaagatccatttctgatacgtatgaggca
gagaaaggataaatgtaggcctggggaaatttgccttccctctcctttcc
ccactcttaccttcccagcagaggatgccagaaaaaaaatattctgtgca
ttaccaccgcttcccatgcccataaccttcataagacaaagaacatttga
acataacacagtatctaaattcccacctcagccccctgagacttctgagt
acttggaaagtaccctgaaagatggagacacggggtctgttgagcacatt
tcaatgactccaagattctccactcatacgcacttgccataaagagagac
agggcaatatttctttaaagagcaagattaaagcaaggatcttcttgttt
gggtcagtagtagacttggaacaaaggaagtttagggtgagaggagttca
tcagtgtgtcaacaggtttagtgtaggctcatgacttaatgtgatctgaa
caattgcaagatgtagaagattaaccggatgagctgtctctggccctcca
tacctgaaaactatgtaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83894901_83895884
seq2: B6Ng01-291L06.b_49_1032

seq1  GAATTCAGTGATTGACGTCATTTTCTGCTCACAGGGATCAAGTTACATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATTGACGTCATTTTCTGCTCACAGGGATCAAGTTACATTC  50

seq1  ATTTAAGAAATGTTGTATGTATTAAGATAATCTATCCATGAAGTCATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAATGTTGTATGTATTAAGATAATCTATCCATGAAGTCATTCA  100

seq1  TCAACTGTTTCAACAAACAATGGTTCTGCTTGGAGTGTGGCACAGACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTTTCAACAAACAATGGTTCTGCTTGGAGTGTGGCACAGACGTT  150

seq1  AGGTGAGGGTAAGATTCTGGTTCATTGGCTGTGATGGTTTTGAAAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGTAAGATTCTGGTTCATTGGCTGTGATGGTTTTGAAAAGCAT  200

seq1  TCATATCAGAATAAGAGTAACTTATAAAGTCCTCTTCTTCAAAATTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCAGAATAAGAGTAACTTATAAAGTCCTCTTCTTCAAAATTGATT  250

seq1  ACAATAATTATAAATATCAAGCAAAGCCTTCAGTCTCACTTTTTGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATTATAAATATCAAGCAAAGCCTTCAGTCTCACTTTTTGCTGTT  300

seq1  CTCTTACAAGCCACCTCCCAAATTAATTGTCTACATTTCTTTTGGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACAAGCCACCTCCCAAATTAATTGTCTACATTTCTTTTGGCTGTA  350

seq1  TAAAATTTTTTGAAATATGTAAGCTGTTCTGAAAACCATAGTATAGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTGAAATATGTAAGCTGTTCTGAAAACCATAGTATAGGGTA  400

seq1  AAAACATCAAATTCACAATCCTACTAATAGAGAGGCTGAGAAAGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAAATTCACAATCCTACTAATAGAGAGGCTGAGAAAGGAAAAG  450

seq1  CATGACTTCAAGACCATTATGTGGCCCACAGCAAGACCATGTCATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCAAGACCATTATGTGGCCCACAGCAAGACCATGTCATGTACA  500

seq1  AACACTCAGAAAGTATATATGGATTGAACAGTATTTGACCTATTTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGAAAGTATATATGGATTGAACAGTATTTGACCTATTTCTCCC  550

seq1  ATTACCAAATTAGAGAGACCACGTGATGACAGCCGACAAATTCTAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAAATTAGAGAGACCACGTGATGACAGCCGACAAATTCTAATTCC  600

seq1  TCATATTTTTTGAATTTCAATCAGTTAGGGTTTGTTGGTAATATTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTTTGAATTTCAATCAGTTAGGGTTTGTTGGTAATATTAATTT  650

seq1  TCATATTAAGAGATATTAAGGAAAGGTGATTGTTCTTCCTGTTAATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAAGAGATATTAAGGAAAGGTGATTGTTCTTCCTGTTAATTTTC  700

seq1  TTGTTAGAGATGGAATGATGTTTGTGTGGGTTTGTTGAAAGATTACTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAGATGGAATGATGTTTGTGTGGGTTTGTTGAAAGATTACTTTC  750

seq1  TTGCTTCTTCTAGGGTGTAGTTTCACTCCTTGTGTTGGTGTTTTCCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTCTAGGGTGTAGTTTCACTCCTTGTGTTGGTGTTTTCCATCT  800

seq1  ATTATCCTTTGTAGGGCTGGATTTGTGGAAAGATATTGTGTAAATTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTGTAGGGCTGGATTTGTGGAAAGATATTGTGTAAATTGGTT  850

seq1  TTGTCATGGAATATCTTGTTTTCTCCGTTTAT-GGTGATTGAGAGTCTGT  899
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TTGTCATGGAATATCTTGTTTTCTCCGTTTATGGGTGAATGAGAGTCTGT  900

seq1  TATTTGACCTTTTCCCCTTACTTCTTTTAAAATTCTTTGTTTAGTGCATT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTGACCTTTTCCCCTTACTTCTTTTAAAATTCTTTG-TTAGTGCATT  949

seq1  TGGTGTTTTGATTA-TTATGTGACAGGAGGAATTTC  984
      ||||| |||||||| ||||||||   ||||||||||
seq2  TGGTG-TTTGATTATTTATGTGAACAGAGGAATTTC  984

seq1: chr2_84021671_84022853
seq2: B6Ng01-291L06.g_66_1236 (reverse)

seq1  CATTTTCCATAG--TTCATGTATGGAGGG-CAGAGGACAACTTCATACGG  47
      || ||| |||||  |||| |||||||||| |||| |||| | |||| |||
seq2  CA-TTTACATAGTTTTCAGGTATGGAGGGCCAGA-GACAGC-TCATCCGG  47

seq1  TTAATTCTTTCTTTACATCTTTGCATGGTTTCCAGATTCAACATTAGGTC  97
      |||| |||   | ||||||||   || |||  |||||   |||||| |||
seq2  TTAA-TCT---TCTACATCTTGCAATTGTT--CAGAT--CACATTAAGTC  89

seq1  ATGAGGCTTACACTAAAACTGTTTGACACACTGAATGAACT-CTCTCACC  146
      |||| || ||||||||| ||| ||||||||||| ||||||| ||||||||
seq2  ATGA-GCCTACACTAAACCTG-TTGACACACTG-ATGAACTCCTCTCACC  136

seq1  CTAAACCTTTCCTTTG-TCCAAGTCTAACTACTGA-CCAAACAAGAAGAT  194
      ||||||  |||||||| ||||||||| |||||||| ||||||||||||||
seq2  CTAAAC--TTCCTTTGTTCCAAGTCT-ACTACTGACCCAAACAAGAAGAT  183

seq1  CCCTGCCTTAATCTTTGCTCTTTAAAGAAATATTGCCCTGTCTCTCTTTA  244
      || ||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTAATC-TTGCTCTTTAAAGAAATATTGCCCTGTCTCTCTTTA  232

seq1  TGGCAAGTGCGTATGAGTGGAGAATCTTGGAGTCATTGAAATGTGCTCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGCGTATGAGTGGAGAATCTTGGAGTCATTGAAATGTGCTCAA  282

seq1  CAGACCCCGTGTCTCCATCTTTCAGGGTACTTTCCAAGTACTCAGAAGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCGTGTCTCCATCTTTCAGGGTACTTTCCAAGTACTCAGAAGTC  332

seq1  TCAGGGGGCTGAGGTGGGAATTTAGATACTGTGTTATGTTCAAATGTTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGCTGAGGTGGGAATTTAGATACTGTGTTATGTTCAAATGTTCT  382

seq1  TTGTCTTATGAAGGTTATGGGCATGGGAAGCGGTGGTAATGCACAGAATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATGAAGGTTATGGGCATGGGAAGCGGTGGTAATGCACAGAATA  432

seq1  TTTTTTTTCTGGCATCCTCTGCTGGGAAGGTAAGAGTGGGGAAAGGAGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGGCATCCTCTGCTGGGAAGGTAAGAGTGGGGAAAGGAGAG  482

seq1  GGAAGGCAAATTTCCCCAGGCCTACATTTATCCTTTCTCTGCCTCATACG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAAATTTCCCCAGGCCTACATTTATCCTTTCTCTGCCTCATACG  532

seq1  TATCAGAAATGGATCTTTCTGGAAAAAGCAGTAATTCCCTAATTAGTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAATGGATCTTTCTGGAAAAAGCAGTAATTCCCTAATTAGTCTG  582

seq1  TCTCTTTATTCCTTTGCCAAACAAGTCTGTCTCTGTTTAACACTTTCTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATTCCTTTGCCAAACAAGTCTGTCTCTGTTTAACACTTTCTAG  632

seq1  TAGTTTTCCATTAGCTACAGAACATGTAGTCTTCTTGGCAAGACACATAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCCATTAGCTACAGAACATGTAGTCTTCTTGGCAAGACACATAA  682

seq1  GGACTTTGCAATAGTTGTCAACTTCATCTTTAGCCTCTACTTAAATCTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGCAATAGTTGTCAACTTCATCTTTAGCCTCTACTTAAATCTCA  732

seq1  GTTTCAAGAAGTTTCTTTTCCATTTCTTTTGAGCTTCTTACAATTTACTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGAAGTTTCTTTTCCATTTCTTTTGAGCTTCTTACAATTTACTT  782

seq1  TATACGTTTTGCTCCTTCAATTATTTGTGTGAAAGTAAGTTATTTCCTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTTTTGCTCCTTCAATTATTTGTGTGAAAGTAAGTTATTTCCTCT  832

seq1  TTCTAGAGGTTCTTTCTGGTCTTTCCACCTTTCAAAATATACTCACTTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGGTTCTTTCTGGTCTTTCCACCTTTCAAAATATACTCACTTAC  882

seq1  TTGTCTAGATGTAAATAAGAAATAACCCCTTTGGGTAGGTTTTCTGAACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGATGTAAATAAGAAATAACCCCTTTGGGTAGGTTTTCTGAACT  932

seq1  TCATGTTTCCTCTTCTGTGCAGATTCCCAAATCCATTCTAATTACCATTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTCCTCTTCTGTGCAGATTCCCAAATCCATTCTAATTACCATTA  982

seq1  TAATATTTCTAATAATAGAGTTGTCTACTTATTTGTTCTAGTATCTATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTAATAATAGAGTTGTCTACTTATTTGTTCTAGTATCTATTT  1032

seq1  TCTTTGTCAAAAATGTCCTCTTTCTCAGTAAACATAGACTATACCAGGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCAAAAATGTCCTCTTTCTCAGTAAACATAGACTATACCAGGCT  1082

seq1  TGGCAGTGTACGCCTTTAAATCCAGCACTTAGGATGCAGAGGCAGGCAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGTACGCCTTTAAATCCAGCACTTAGGATGCAGAGGCAGGCAGA  1132

seq1  TCTCTGTTAGTTGGAGGCCAGCCTGGTCATAGAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTAGTTGGAGGCCAGCCTGGTCATAGAGAATTC  1171