BAC Information

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BAC

Clone NameB6Ng01-291O08
Chromosome2 (Build37)
Map Location 71,745,233 - 71,917,676
singlet/doubletdoublet
Overlap geneRapgef4
Upstream geneMettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1
Downstream geneLOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291O08.bB6Ng01-291O08.g
ACCGA088668GA088669
length1,141579
definitionB6Ng01-291O08.b B6Ng01-291O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,745,233 - 71,746,388)(71,917,098 - 71,917,676)
sequence
gaattctgtactgtaggctttctctgcagtaggctatagaagcaaagctg
ccctaaattacctcttggacatacttcttcaaaggagcgttctaaaccag
cctaaagtgaaggtcaccctgcttacattttaaacaccccaaattgaaca
tccaaaatggaaactttattttttttttaaaaaaattgagacttgggtag
cttagataattctcttcccaaaccgtgctattcctgcattcttctaagat
gtattttgtgctcgctgagcgttatggctccagcacacctctgtttgcca
gccattcctgaacctgtgtctaactaaaataggcctcattgtcaccccaa
gtcacagactctgcagtggcacggctgccactatgaccacagattgtctc
ctgtgccaagctccatcggtggctactgggatggagtgggctggaacagt
cgtgtgatggtgaaccccaaacggacggaggaatgaggttggccctagtc
aagagtgcacagtgagtcccagtggaacaggtagagaggtctggaggacc
cagcaggcatcaggggaggaggagcaaccagagattgacagctgatgggc
gtttggattctaaaactgaactgtttagcgcatcatcatatccagtgtga
ggtgcttcctgagcaagcccagtgaagcagatatttaaggatttttaatt
atccttaatgggcccatagtaattgtatacatttatgagctatataatca
gcatagcccctcccaagcatttatcatatctttgtttggggaacatgcag
aatcctattttgaagtctatgacatattattactaacagtggtcaccctg
tagtgtaaagcgccctgtagtctcccctcccccagcctgaaacctgcttg
ctcaggggtggagcttcctgctcattcgttctgccacgcccactgctgga
acctgcggagccacacacgtgctcactttctactggaccagagattattc
gcgggaatcggtcccctccccctttcttcatactagtgtcgcaacaataa
atttgagctttgatcagaatactgtctgctacattctttctcctccgcca
ctagtccctcttctctcagatccaatgccttccaggctaga
gaattcacagatgaagaaatttaaaacaacaacaaaagcacaaaaaaaaa
aaacttttaaatgaatggagagataacatggggtacagccagtgaatgga
acactgctcggtgatatcaaaggataataaaaataaaaaaagaagaagaa
aataaagagccagtgctcagacaagccgtaacttgaatggatgcaaaagg
cagcaaatgcagaaaacataacttgtacgtgtttatcttcatgcaatgtt
cagaagaaaggaaagatctgagtcagcggtcacctggggccagaggagga
acagaagtcactgttcagagaccaccaggacccaacgggaaggaagcgca
cagctgctgtgaggctgacactcagcgaggggctgtacttgaaatggggg
aagtggtgaggggactttgaggttttctaattgtgccattcaaaggttgg
ctttaaaagtcttcgaaggggttgaggctgtagtgggggatagaatcaac
gttagcatgtgtgaggccctgggtttgatcttcagcatgggacagagaag
agggaggaggcagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_71745233_71746388
seq2: B6Ng01-291O08.b_49_1189

seq1  GAATTCTGTACTGTAGGCTTTCTCTGCAGTAGGCTATAGAAGCAAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTGTAGGCTTTCTCTGCAGTAGGCTATAGAAGCAAAGCTG  50

seq1  CCCTAAATTACCTCTTGGACATACTTCTTCAAAGGAGCGTTCTAAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATTACCTCTTGGACATACTTCTTCAAAGGAGCGTTCTAAACCAG  100

seq1  CCTAAAGTGAAGGTCACCCTGCTTACATTTTAAACACCCCAAATTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTGAAGGTCACCCTGCTTACATTTTAAACACCCCAAATTGAACA  150

seq1  TCCAAAATGGAAACTTTATTTTTTTTTTAAAAAAATTGAGACTTGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGGAAACTTTATTTTTTTTTTAAAAAAATTGAGACTTGGGTAG  200

seq1  CTTAGATAATTCTCTTCCCAAACCGTGCTATTCCTGCATTCTTCTAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAATTCTCTTCCCAAACCGTGCTATTCCTGCATTCTTCTAAGAT  250

seq1  GTATTTTGTGCTCGCTGAGCGTTATGGCTCCAGCACACCTCTGTTTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTGCTCGCTGAGCGTTATGGCTCCAGCACACCTCTGTTTGCCA  300

seq1  GCCATTCCTGAACCTGTGTCTAACTAAAATAGGCCTCATTGTCACCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCTGAACCTGTGTCTAACTAAAATAGGCCTCATTGTCACCCCAA  350

seq1  GTCACAGACTCTGCAGTGGCACGGCTGCCACTATGACCACAGATTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACTCTGCAGTGGCACGGCTGCCACTATGACCACAGATTGTCTC  400

seq1  CTGTGCCAAGCTCCATCGGTGGCTACTGGGATGGAGTGGGCTGGAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCAAGCTCCATCGGTGGCTACTGGGATGGAGTGGGCTGGAACAGT  450

seq1  CGTGTGATGGTGAACCCCAAACGGACGGAGGAATGAGGTTGGCCCTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGATGGTGAACCCCAAACGGACGGAGGAATGAGGTTGGCCCTAGTC  500

seq1  AAGAGTGCACAGTGAGTCCCAGTGGAACAGGTAGAGAGGTCTGGAGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCACAGTGAGTCCCAGTGGAACAGGTAGAGAGGTCTGGAGGACC  550

seq1  CAGCAGGCATCAGGGGAGGAGGAGCAACCAGAGATTGACAGCTGATGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCATCAGGGGAGGAGGAGCAACCAGAGATTGACAGCTGATGGGC  600

seq1  GTTTGGATTCTAAAACTGAACTGTTTAGCGCATCATCATATCCAGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATTCTAAAACTGAACTGTTTAGCGCATCATCATATCCAGTGTGA  650

seq1  GGTGCTTCCTGAGCAAGCCCAGTGAAGCAGATATTTAAGGATTTTTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCCTGAGCAAGCCCAGTGAAGCAGATATTTAAGGATTTTTAATT  700

seq1  ATCCTTAATGGGCCCATAGTAATTGTATACATTTATGAGCTATATAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAATGGGCCCATAGTAATTGTATACATTTATGAGCTATATAATCA  750

seq1  GCATAGCCCCTCCCAAGCATTTATCATATCTTTGTTTGGGGAACATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCCCTCCCAAGCATTTATCATATCTTTGTTTGGGGAACATGCAG  800

seq1  AATCCTATTTTGAAGTCTATGACATATTATTACTAACAGTGGTCACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATTTTGAAGTCTATGACATATTATTACTAACAGTGGTCACCCTG  850

seq1  TAGTGTAAAGCGCCCTGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAAAGCGCCCTGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTTG  900

seq1  CTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGTGGAGCTTCCTGCTCATTCGTTCTGCCACGCCCACTGCTGGA  950

seq1  ACCTGCGGAGCCACACACGTGCTCACCTTTCTACTGGACCAGAGATTATT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCTGCGGAGCCACACACGTGCTCA-CTTTCTACTGGACCAGAGATTATT  999

seq1  CGGCGGGAATCGGGTCCCCTCCCCCTTCCTTCATAACTAGTGTCGCAACA  1050
      | ||||||||| ||||||||||||||| |||||| |||||||||||||||
seq2  C-GCGGGAATC-GGTCCCCTCCCCCTTTCTTCAT-ACTAGTGTCGCAACA  1046

seq1  ATAAAATTTGAGCTTTGATCAGAATAACTGTCTTGGCTACATTTCTTTCT  1100
      || |||||||||||||||||||||| |||||||  |||||| ||||||||
seq2  AT-AAATTTGAGCTTTGATCAGAAT-ACTGTCT--GCTACA-TTCTTTCT  1091

seq1  C--TCGCCACCTAGCCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCC  1148
      |   ||||| |||| |||||||||||  |||   |||  |||||| ||||
seq2  CCTCCGCCA-CTAGTCCCTCTTCTCT--CAG--ATCC--AATGCC-TTCC  1133

seq1  AGGCTAGA  1156
      ||||||||
seq2  AGGCTAGA  1141

seq1: chr2_71917098_71917676
seq2: B6Ng01-291O08.g_69_647 (reverse)

seq1  CTCTCTCTCTCTCTCTCTGCCTCCTCCCTCTTCTCTGTCCCATGCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTGCCTCCTCCCTCTTCTCTGTCCCATGCTGAAG  50

seq1  ATCAAACCCAGGGCCTCACACATGCTAACGTTGATTCTATCCCCCACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACCCAGGGCCTCACACATGCTAACGTTGATTCTATCCCCCACTAC  100

seq1  AGCCTCAACCCCTTCGAAGACTTTTAAAGCCAACCTTTGAATGGCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAACCCCTTCGAAGACTTTTAAAGCCAACCTTTGAATGGCACAAT  150

seq1  TAGAAAACCTCAAAGTCCCCTCACCACTTCCCCCATTTCAAGTACAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACCTCAAAGTCCCCTCACCACTTCCCCCATTTCAAGTACAGCCC  200

seq1  CTCGCTGAGTGTCAGCCTCACAGCAGCTGTGCGCTTCCTTCCCGTTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGAGTGTCAGCCTCACAGCAGCTGTGCGCTTCCTTCCCGTTGGGT  250

seq1  CCTGGTGGTCTCTGAACAGTGACTTCTGTTCCTCCTCTGGCCCCAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTCTCTGAACAGTGACTTCTGTTCCTCCTCTGGCCCCAGGTGA  300

seq1  CCGCTGACTCAGATCTTTCCTTTCTTCTGAACATTGCATGAAGATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGACTCAGATCTTTCCTTTCTTCTGAACATTGCATGAAGATAAACA  350

seq1  CGTACAAGTTATGTTTTCTGCATTTGCTGCCTTTTGCATCCATTCAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAAGTTATGTTTTCTGCATTTGCTGCCTTTTGCATCCATTCAAGTT  400

seq1  ACGGCTTGTCTGAGCACTGGCTCTTTATTTTCTTCTTCTTTTTTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTTGTCTGAGCACTGGCTCTTTATTTTCTTCTTCTTTTTTTATTTT  450

seq1  TATTATCCTTTGATATCACCGAGCAGTGTTCCATTCACTGGCTGTACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTTTGATATCACCGAGCAGTGTTCCATTCACTGGCTGTACCCC  500

seq1  ATGTTATCTCTCCATTCATTTAAAAGTTTTTTTTTTTTGTGCTTTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCTCTCCATTCATTTAAAAGTTTTTTTTTTTTGTGCTTTTGTTG  550

seq1  TTGTTTTAAATTTCTTCATCTGTGAATTC  579
      |||||||||||||||||||||||||||||
seq2  TTGTTTTAAATTTCTTCATCTGTGAATTC  579