BAC Information

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BAC

Clone NameB6Ng01-292N06
Chromosome2 (Build37)
Map Location 93,428,054 - 93,593,491
singlet/doubletdoublet
Overlap geneAlx4, Ext2
Upstream geneChst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
Downstream gene2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N06.bB6Ng01-292N06.g
ACCGA089366GA089367
length1,0551,072
definitionB6Ng01-292N06.b B6Ng01-292N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,592,807 - 93,593,491)(93,428,054 - 93,429,116)
sequence
gaattctttttcctctctgctttgttctatttcctgttccagggtctagc
atatttctttttctggtgtcttccttccagggagctgcctaaggcagtgc
acaggagaggagacactgctcagtcactgtgggtgtctggaaatgagctt
cccatgtgctgagggcttggactcggaattgtggtggaggcagatttact
cggaactttgaaatcgttgctggtgtctcctggtccttccatgtactctc
agaaagagaaacattttagttcttggcttttaatgttaactcttggcaac
ttctgtgttctaaagattttaggataatgtgcccccacatgagtgttttt
gctgacaatgctgattcaagctctttcaagctggaaatccttgcctttca
gtgcagaggcattttcttcttgaatgtcttttgttattttcttcttctgt
cctctcgtttctctctgcagcttctgtgcctggatggtgaatgtgtggag
tagctctgctgctttttcttctgggcctgatccttctgtactcatttctg
ggacatttcctccctttatattttaacttttcttttaattaaaacaaaca
aacaaacaaacaaacatcttttttatttcaaactaatctttcatatcagt
tcttattttaaggatacgttattttccatctctgaaaatattgcttgtga
ttgtatttatttattctttcctttttcttttctaatttcttatttgctct
tttgtagtgaaagctttctttaagcacctgggtcaatggtggcatcatct
ctttgttgagtgaggcacagaaagctgattgggaaggtctgggcttaagg
tggggacttcttgtgccccagggtgagggtcagagaagggatgagtaagt
gtgggccccaagcatttgagaactgagtaagggagggagcgggagtcctt
atcctttgtttgtagatggtacctcgcctatgtgttagtcagggtctctt
ggagttatggaacttatgggaataaatttcccctccccccattcaagaat
ttagt
gaattcagatgggtctgcagtggggagagcctctcgtcacagattttggt
tgacacctaatgctgtcgggtggggagtggggtccatttaacagataagg
aaaccaaggtgctcagaggttcatgctttgctggaaacaatgtcttatgt
ttctgtggcaaagtcagaacccttccctggtccctgaagcccacaggtta
tgccgtcccagggcagcgtgtgttaccatggtttcactgtttgaccaact
gccccacccatttccatataaatctcattcctagttcatccccaaatagg
tgtgaatactcactaacaagccctttcagagatgaaacagaaagtggaag
tcacagggtcaccatgggggaattagccacatgtggcagctcatgaacct
attagtatggcttaactactgatgccagtgggtggactcagcacctcagg
cagacctgcactttccatgcctaataaataaaccaggtggggctctctct
gcccagtgagaacctcactttaagtcacagtacagtatccaacaggatta
aagctgctaggtactgagaggcctactatgggccagcccgcagaccaatc
acccatctttcctgatgtcattgctgtagatgctgttgtagtctgttttc
accttatgcatgaaaaaaacgagtcacaagaaggtttaaaggatgggctt
ggggttctataggcagctagcttcttttctgtgcctgtgtacctccagag
cctgttgtttccactgcctggttctgtccagggccagcaagaacctcaat
tgtaccctgtcctgatgccacacagggtttggctgagtatgcccctttaa
actcatcagcagaaagtagaacctattttcgggcgccatctatggtaaca
gcatctctgtttttttgtttgtttggttttttttttttttgttttttttg
tttctgttttggttatcctccaggaactgtccagccttcagttctgagct
gaggaagttggacagttatctgtcttgaatcattcttggttcccttcgag
aggatagccatgaacttgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93592807_93593491
seq2: B6Ng01-292N06.b_413_1101 (reverse)

seq1  ACTAAATTCTTGGATGGGGGGAGGGGAAATTTATT-CCATAAGTTCCATA  49
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  ACTAAATTCTTGAATGGGGGGAGGGGAAATTTATTCCCATAAGTTCCATA  50

seq1  ACT-CAAGAGAACCCTGACTAACACATAGGGCGAGGTACCATCTACAAAA  98
      ||| |||||| ||||||||||||||||| ||||||||||||||||| |||
seq2  ACTCCAAGAG-ACCCTGACTAACACATA-GGCGAGGTACCATCTAC-AAA  97

seq1  CAAAGGATAAGGACTCCCGCTCCCTCCCTTACTCAGTTCTCAAATGCTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATAAGGACTCCCGCTCCCTCCCTTACTCAGTTCTCAAATGCTTG  147

seq1  GGGCCCACACTTACTCATCCCTTCTCTGACCCTCACCCTGGGGCACAAG-  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGCCCACACTTACTCATCCCTTCTCTGACCCTCACCCTGGGGCACAAGA  197

seq1  AGTCCCCACCTTAAGCCCAGACCTT-CCAATCAGCTTTCTGTGCCTCACT  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCCCCACCTTAAGCCCAGACCTTCCCAATCAGCTTTCTGTGCCTCACT  247

seq1  CA--CAAGAGATGATGCCACCATTGA-CCAGGTGCTTAAAGAAAGCTTTC  293
      ||   ||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAACAAAGAGATGATGCCACCATTGACCCAGGTGCTTAAAGAAAGCTTTC  297

seq1  ACTACAAAAGAGCAAATAAGAAATTAGAAAAGAAAAAGGAAAGAATAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAGAGCAAATAAGAAATTAGAAAAGAAAAAGGAAAGAATAAAT  347

seq1  AAATACAATCACAAGCAATATTTTCAGAGATGGAAAATAACGTATCCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATCACAAGCAATATTTTCAGAGATGGAAAATAACGTATCCTTA  397

seq1  AAATAAGAACTGATATGAAAGATTAGTTTGAAATAAAAAAGATGTTTGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAACTGATATGAAAGATTAGTTTGAAATAAAAAAGATGTTTGTT  447

seq1  TGTTTGTTTGTTTGTTTTAATTAAAAGAAAAGTTAAAATATAAAGGGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTTAATTAAAAGAAAAGTTAAAATATAAAGGGAGG  497

seq1  AAATGTCCCAGAAATGAGTACAGAAGGATCAGGCCCAGAAGAAAAAGCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCAGAAATGAGTACAGAAGGATCAGGCCCAGAAGAAAAAGCAG  547

seq1  CAGAGCTACTCCACACATTCACCATCCAGGCACAGAAGCTGCAGAGAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACTCCACACATTCACCATCCAGGCACAGAAGCTGCAGAGAGAA  597

seq1  ACGAGAGGACAGAAGAAGAAAATAACAAAAGACATTCAAGAAGAAAATGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGACAGAAGAAGAAAATAACAAAAGACATTCAAGAAGAAAATGC  647

seq1  CTCTGCACTGAAAGGCAAGGATTTCCAGCTTGAAAGAGCTTG  685
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACTGAAAGGCAAGGATTTCCAGCTTGAAAGAGCTTG  689

seq1: chr2_93428054_93429116
seq2: B6Ng01-292N06.g_69_1140

seq1  GAATTCAGATGGGTCTGCAGTGGGGAGAGCCTCTCGTCACAGATTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGGGTCTGCAGTGGGGAGAGCCTCTCGTCACAGATTTTGGT  50

seq1  TGACACCTAATGCTGTCGGGTGGGGAGTGGGGTCCATTTAACAGATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTAATGCTGTCGGGTGGGGAGTGGGGTCCATTTAACAGATAAGG  100

seq1  AAACCAAGGTGCTCAGAGGTTCATGCTTTGCTGGAAACAATGTCTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGTGCTCAGAGGTTCATGCTTTGCTGGAAACAATGTCTTATGT  150

seq1  TTCTGTGGCAAAGTCAGAACCCTTCCCTGGTCCCTGAAGCCCACAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGCAAAGTCAGAACCCTTCCCTGGTCCCTGAAGCCCACAGGTTA  200

seq1  TGCCGTCCCAGGGCAGCGTGTGTTACCATGGTTTCACTGTTTGACCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCCCAGGGCAGCGTGTGTTACCATGGTTTCACTGTTTGACCAACT  250

seq1  GCCCCACCCATTTCCATATAAATCTCATTCCTAGTTCATCCCCAAATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCATTTCCATATAAATCTCATTCCTAGTTCATCCCCAAATAGG  300

seq1  TGTGAATACTCACTAACAAGCCCTTTCAGAGATGAAACAGAAAGTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATACTCACTAACAAGCCCTTTCAGAGATGAAACAGAAAGTGGAAG  350

seq1  TCACAGGGTCACCATGGGGGAATTAGCCACATGTGGCAGCTCATGAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGTCACCATGGGGGAATTAGCCACATGTGGCAGCTCATGAACCT  400

seq1  ATTAGTATGGCTTAACTACTGATGCCAGTGGGTGGACTCAGCACCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATGGCTTAACTACTGATGCCAGTGGGTGGACTCAGCACCTCAGG  450

seq1  CAGACCTGCACTTTCCATGCCTAATAAATAAACCAGGTGGGGCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGCACTTTCCATGCCTAATAAATAAACCAGGTGGGGCTCTCTCT  500

seq1  GCCCAGTGAGAACCTCACTTTAAGTCACAGTACAGTATCCAACAGGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGAGAACCTCACTTTAAGTCACAGTACAGTATCCAACAGGATTA  550

seq1  AAGCTGCTAGGTACTGAGAGGCCTACTATGGGCCAGCCCGCAGACCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTAGGTACTGAGAGGCCTACTATGGGCCAGCCCGCAGACCAATC  600

seq1  ACCCATCTTTCCTGATGTCATTGCTGTAGATGCTGTTGTAGTCTGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTTTCCTGATGTCATTGCTGTAGATGCTGTTGTAGTCTGTTTTC  650

seq1  ACCTTATGCATGAAAAAAACGAGTCACAAGAAGGTTTAAAGGATGGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATGCATGAAAAAAACGAGTCACAAGAAGGTTTAAAGGATGGGCTT  700

seq1  GGGGTTCTATAGGCAGCTAGCTTCTTTTCTGTGCCTGTGTACCTCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTATAGGCAGCTAGCTTCTTTTCTGTGCCTGTGTACCTCCAGAG  750

seq1  CCTGTTGTTTCCACTGCCTGG-TCTGTCCAGGGCCAGCAAGAACCTCAA-  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CCTGTTGTTTCCACTGCCTGGTTCTGTCCAGGGCCAGCAAGAACCTCAAT  800

seq1  TGTACCCTGTCCTGATGCCACACAGGGTTTGGCTGAGTATGCCCCTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTGTCCTGATGCCACACAGGGTTTGGCTGAGTATGCCCCTTTAA  850

seq1  ACTCATCAGCAGAAAGTAGAACCTA-TTTCGGGCGCCATCTATGGTAACA  897
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTCATCAGCAGAAAGTAGAACCTATTTTCGGGCGCCATCTATGGTAACA  900

seq1  GCATCTCTG-TTTTTTGTTTGTTTGG-TTTTTTTTTTTTTGTTTTTTTTG  945
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GCATCTCTGTTTTTTTGTTTGTTTGGTTTTTTTTTTTTTTGTTTTTTTTG  950

seq1  TTTTTGTTTTTGTTTTTTCTTCCAGGAACTGTCCAGCCTTCAG-TCTGAG  994
      ||| |||||| |  || || ||||||||||||||||||||||| ||||||
seq2  TTTCTGTTTTGG--TTATCCTCCAGGAACTGTCCAGCCTTCAGTTCTGAG  998

seq1  CTGAGGAAG-TGGACAGTTATCTGTC-TGATACA-TCTTGGT--CCCTCG  1039
      ||||||||| |||||||||||||||| |||  || |||||||  || |||
seq2  CTGAGGAAGTTGGACAGTTATCTGTCTTGAATCATTCTTGGTTCCCTTCG  1048

seq1  AGAAGAAAGCCATGAACTTGAGTG  1063
      ||| || |||||||||||||||||
seq2  AGAGGATAGCCATGAACTTGAGTG  1072