BAC Information

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BAC

Clone NameB6Ng01-293B07
Chromosome2 (Build37)2 (Build37)
Map Location 91,598,640 - 91,598,736180,413,897 - 180,415,038
singlet/doubletsingletsinglet
Overlap geneD030051N19Rik
Upstream geneFnbp4, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Downstream geneChrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293B07.bB6Ng01-293B07.g
ACCGA089550GA089551
length1201,140
definitionB6Ng01-293B07.b B6Ng01-293B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,598,640 - 91,598,736)(180,413,897 - 180,415,038)
sequence
aagaagctcataagattaaaaaggacagacaggaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaagaaggaaa
gaaggaaagaaggaaagaag
gaattctgttcctcagctctggctcatgtaacttaggacttcccattgct
tcaccatacctctttccagtgaggtggcagtggaaatgtttttgctgttg
cttcctagacatgcttaagtatcttcaaataaataatttccctctaccca
cacctcatgcacatgcctgtaatctcaggattcaggaggctgaggcagga
ctgaaaaaggtggccgggactgatattgaaaccatcaaaaaaaattaata
cttatctttaagagaagttaccaatttagttttatatgtaagaaaacgag
gcttggacaaagcagcacaggctacatcagagatgagtgcccagtgacta
tgcatgtgactaaacatgtgaccctgcagaggtccacatccaactagatg
aaaatcttttcttactcatgtccagtatttgacttccatcttaatgcaga
gaccaactcttgcaagttatcttaaccaatcacataggatcttgaaatct
tcagcttaaatcatgttggattggtaatttcttacattgttagtcactgg
aatacagtgtggtgagggccatgtgggtgtgttcaatctgcccagctacg
tggaagctgagctgctgtttctcagatttccccaaacataccaggtacag
atgacttcagccaagttcattttaaccattatttctttgtaccaagttat
tacaacaatctgtgtgccttcctagaccctccagacctaatggggccaat
gctggaggtgcagtggataaccaggtgtagagaatgcaaccagttacctt
aggttcttgccgagctcttccaggtttgtggcaaatcaatgttgcccaaa
ccttctttaaagcagccaagaatctgatctacgtttacactctaacttct
ggatactaagcatgttaactatgtgcatgttggtgtgtatcagaagcatt
ttatcactttatactaatgattggtggcaggcatctcagaggagaccctt
tgcaacttcttgagatcagcaatgccatcaaaagatttttcttggggagt
gtactctgatcacagctcttagttacagcagtcattcagaagagggtgag
gaccagtacagctataggactggagttactcctttagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91598640_91598736
seq2: B6Ng01-293B07.b_131_170 (reverse)

seq1  CTTCTTTCCTTCTTTCCTAATCTCCTCCTCCTCTTCCTCCTCCTCCTCCT  50
      ||||||||||||||||||  | |||| ||   |||| | |          
seq2  CTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTC----------  40

seq1  CCTCCTCCTCCTCCTTCTTTTAAATACCCTCCTCCTTTCCTTCTTTC  97
                                                     
seq2  -----------------------------------------------  40

seq1: chr2_180413897_180415038
seq2: B6Ng01-293B07.g_64_1203

seq1  GAATTCTGTTCCTCAGCTCTGGCTCATGTAACTTAGGACTTCCCATTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCCTCAGCTCTGGCTCATGTAACTTAGGACTTCCCATTGCT  50

seq1  TCACCATACCTCTTTCCAGTGAGGTGGCAGTGGAAATGTTTTTGCTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATACCTCTTTCCAGTGAGGTGGCAGTGGAAATGTTTTTGCTGTTG  100

seq1  CTTCCTAGACATGCTTAAGTATCTTCAAATAAATAATTTCCCTCTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGACATGCTTAAGTATCTTCAAATAAATAATTTCCCTCTACCCA  150

seq1  CACCTCATGCACATGCCTGTAATCTCAGGATTCAGGAGGCTGAGGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATGCACATGCCTGTAATCTCAGGATTCAGGAGGCTGAGGCAGGA  200

seq1  CTGAAAAAGGTGGCCGGGACTGATATTGAAACCATCAAAAAAAATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAGGTGGCCGGGACTGATATTGAAACCATCAAAAAAAATTAATA  250

seq1  CTTATCTTTAAGAGAAGTTACCAATTTAGTTTTATATGTAAGAAAACGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTAAGAGAAGTTACCAATTTAGTTTTATATGTAAGAAAACGAG  300

seq1  GCTTGGACAAAGCAGCACAGGCTACATCAGAGATGAGTGCCCAGTGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACAAAGCAGCACAGGCTACATCAGAGATGAGTGCCCAGTGACTA  350

seq1  TGCATGTGACTAAACATGTGACCCTGCAGAGGTCCACATCCAACTAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGACTAAACATGTGACCCTGCAGAGGTCCACATCCAACTAGATG  400

seq1  AAAATCTTTTCTTACTCATGTCCAGTATTTGACTTCCATCTTAATGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTCTTACTCATGTCCAGTATTTGACTTCCATCTTAATGCAGA  450

seq1  GACCAACTCTTGCAAGTTATCTTAACCAATCACATAGGATCTTGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACTCTTGCAAGTTATCTTAACCAATCACATAGGATCTTGAAATCT  500

seq1  TCAGCTTAAATCATGTTGGATTGGTAATTTCTTACATTGTTAGTCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTAAATCATGTTGGATTGGTAATTTCTTACATTGTTAGTCACTGG  550

seq1  AATACAGTGTGGTGAGGGCCATGTGGGTGTGTTCAATCTGCCCAGCTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTGTGGTGAGGGCCATGTGGGTGTGTTCAATCTGCCCAGCTACG  600

seq1  TGGAAGCTGAGCTGCTGTTTCTCAGATTTCCCCAAACATACCAGGTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGAGCTGCTGTTTCTCAGATTTCCCCAAACATACCAGGTACAG  650

seq1  ATGACTTCAGCCAAGTTCATTTTAACCATTATTTCTTTGTACCAAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCAGCCAAGTTCATTTTAACCATTATTTCTTTGTACCAAGTTAT  700

seq1  TACAACAATCTGTGTGCCTTCCTAGACCCTCCAGACCTAATGGGGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAATCTGTGTGCCTTCCTAGACCCTCCAGACCTAATGGGGCCAAT  750

seq1  GCTGGAGGTGCAGTGGATAACCAGGTGTAGAGAATGCAACCAGTTACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGTGCAGTGGATAACCAGGTGTAGAGAATGCAACCAGTTACCTT  800

seq1  AGGTTCTTGCCGAGCTCTTCCAGGTTTGTGGCAAATCAATGTTGCCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTGCCGAGCTCTTCCAGGTTTGTGGCAAATCAATGTTGCCCAAA  850

seq1  CCTTCTTTAAAGCAGCCAAGAATCTGATCTACGTTTACACTCTAACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAAGCAGCCAAGAATCTGATCTACGTTTACACTCTAACTTCT  900

seq1  GGATACTAAGCATGTTAACTATGTGCATGTTGGTGTGTATCAGAAGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTAAGCATGTTAACTATGTGCATGTTGGTGTGTATCAGAAGCATT  950

seq1  TTATCACTTTATACTAATGATT-GTGGCAGGCATCTTCAGAGGAGA-CCT  998
      |||||||||||||||||||||| |||||||||||| |||||||||| |||
seq2  TTATCACTTTATACTAATGATTGGTGGCAGGCATC-TCAGAGGAGACCCT  999

seq1  TTGCA--CTCTTGAGATCAGCAATGCCATCAAAAGGATTTTCTT-GGGAG  1045
      |||||   |||||||||||||||||||||||||||  ||||||| |||||
seq2  TTGCAACTTCTTGAGATCAGCAATGCCATCAAAAGATTTTTCTTGGGGAG  1049

seq1  TGTTAACTCTGATCCACAGCTCCTTAAGTTTACAGGAAGGTCATTCAG-A  1094
      |||  |||||||| ||||||| ||||   |||||| |  ||||||||| |
seq2  TGT--ACTCTGAT-CACAGCT-CTTA--GTTACAGCA--GTCATTCAGAA  1091

seq1  GAGGTGAAGGACACAGGGACAGCTATAGGACTGGAG-TACTC--TTAGGG  1141
      ||||   ||||| || | |||||||||||||||||| |||||  ||||||
seq2  GAGGGTGAGGAC-CA-GTACAGCTATAGGACTGGAGTTACTCCTTTAGGG  1139

seq1  G  1142
      |
seq2  G  1140