BAC Information

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BAC

Clone NameB6Ng01-294K09
Chromosome2 (Build37)
Map Location 125,938,606 - 126,054,938
singlet/doubletdoublet
Overlap geneDtwd1
Upstream geneMyef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7
Downstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294K09.bB6Ng01-294K09.g
ACCGA090724GA090725
length1,1081,171
definitionB6Ng01-294K09.b B6Ng01-294K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,053,828 - 126,054,938)(125,938,606 - 125,939,774)
sequence
gaattccaaatgtcacacactcacagaaactatctgcagttggcaaaatc
acacctctgctagagcacgaggcaaatcatgatcagctgttgtgggaaat
atgaagaaatcccatatctcacatctgggattaaaatggaagcacattcc
tatttttgtatcttttaaagaaatcaaaatcctcactctatttccctagt
gctgtctgtggtgtcccatgatctgaagactctaagtaagaaagccctgc
ttgtatagcctttctcagcaccttccctttcctccccacctctgactctg
tcttatcagtcactacatagcataacaaacaaatatgttaaactatagca
caactgaatgcttaattaagatcaagaaactaaatcttccaagcatgggt
atgcatggccagaggacacaatgttcagagaaaggccatatatggtgaca
cagctgtgtaatcactgcagctaggagcctgagaaaaagaacaagttcaa
ctaacctgactccacagggaggttttaggtcactttggactgtatagcag
catgctgtgtcaagtaacaacaaacaaacaaacaaacaaacaaacgaacg
aacctcctccaaaaaattcaggagaataattgccaaagacaggagatttt
atggtgaacacttgagactggtcagtggaagctcacacatctctcacctt
ccagacagaaaaggcttcaatctttacatccagaaaagccagggtaagtt
cactgtggaaacattgaccatacaaagacagctgtgctgcggttcccact
gtgctcagaataaaaactgggatagaactctgactgctaagactgcctag
tggtgatttgtccagaggctgaggcactccaggtgggaagggtatcactg
tggcgatatgggttccttagatttcttacctgcttgctagctggatctgc
ctgcacgccaaagttttgactcagtattcccattggtttgtgtagcctca
gtccaacaacagaaatgacatacaaacaaacttgagccacctatatacag
agctgggatggggcgaaataggggatggggctgcagcagggcatgcccaa
taaactgt
gaattctagaagtatatgactaaggcaacctttatggttgaatggatgca
ttattgcattaggagatcgccatgattctatgggagcttggggcagatgt
ctttgaatacttcatccctagctggtggtactatcttaggaggtataacc
tgtatgtaagaaatgaggcctagctggcataagtaagtggctatggatga
actttccctgcctctgtcttctcactgtgacaactagccacaagcttctt
caccaagcccagggcctcagccaccatgcattctttcactgtgaaaccat
gcactaaaataaatctgcacttcctgaagttgttcactgtccaggatttg
gttcttgtgaggaacgcactgtgtgtttaactctgcaggtgacgttcctt
aaagtgtttactgtgagtctgatctaacggtgacaaaggacctcggtatt
gcttgtgtttacagggctatttctccattactgcaggacggtgtttccag
gtaaactcttcttggttgaaacttatcactccttccttagcatacaaggc
tttgagaagctgctggagtccagtggggatttccttgtatttgatacatt
gtttcactcttgaacttcattggcttggatcagtggttagtggccctttg
agattcacgcatatacaagtgtaagaagacttggcatgtcttctataacc
atttcattgaatattttcttctcgggtatccactttctcaagccagaact
gtgatcatgtaaaaatttgctcattaaatgtatcctagaaatcccacgtg
ctttaatttcattggtttttcttttttctctgtatgatttaaaaggactt
gtcttcaaaaacagttctttttctgctttatataatctgccagttcccta
ttttaatttttttggtgctaacatctgtcagttcttttaaaatcatgcct
agatttgttgactctgaagattcagtcatctctctgctcctctaagccct
cctcttgtgctctcttgaacctcactggattgctaatagaatatcattgt
acatcccttctctggcaatattataacgtccagtttactaggattcacgg
ctgatccctcaggtggatgtcaatgattcctcttccttgacatctgtaca
cccctcaatgagagccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126053828_126054938
seq2: B6Ng01-294K09.b_47_1154 (reverse)

seq1  ACAGTTTATTGGGCCATGCCCCCTGCTGCAGCCCCAACCCCTATCTCGCC  50
      ||||||||||||| ||||  |||||||||||||||| ||||||| |||||
seq2  ACAGTTTATTGGG-CATG--CCCTGCTGCAGCCCCATCCCCTATTTCGCC  47

seq1  CCATCCCAGCTCTGTATATA-GTGGCTCCAAAGTTTGTTTGTATGTCATT  99
      |||||||||||||||||||| |||||||  ||||||||||||||||||||
seq2  CCATCCCAGCTCTGTATATAGGTGGCTC--AAGTTTGTTTGTATGTCATT  95

seq1  TCTG-TGTTGGACTGAGGCTTACACAAACCAAT-GGAATACTGAGTCAAA  147
      |||| |||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TCTGTTGTTGGACTGAGGC-TACACAAACCAATGGGAATACTGAGTCAAA  144

seq1  ACTTTGGCGTGCAGGCAGATCCAGCTAGCAAGCAGGTAAGAAATCTAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCGTGCAGGCAGATCCAGCTAGCAAGCAGGTAAGAAATCTAAGG  194

seq1  AACCCATATCGCCACAGTGATACCCTTCCCACCTGGAGTGCCTCAGCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATATCGCCACAGTGATACCCTTCCCACCTGGAGTGCCTCAGCCTC  244

seq1  TGGACAAATCACCACTAGGCAGTCTTAGCAGTCAGAGTTCTATCCCAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAATCACCACTAGGCAGTCTTAGCAGTCAGAGTTCTATCCCAGTT  294

seq1  TTTATTCTGAGCACAGTGGGAACCGCAGCACAGCTGTCTTTGTATGGTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGAGCACAGTGGGAACCGCAGCACAGCTGTCTTTGTATGGTCA  344

seq1  ATGTTTCCACAGTGAACTTACCCTGGCTTTTCTGGATGTAAAGATTGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCACAGTGAACTTACCCTGGCTTTTCTGGATGTAAAGATTGAAG  394

seq1  CCTTTTCTGTCTGGAAGGTGAGAGATGTGTGAGCTTCCACTGACCAGTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTCTGGAAGGTGAGAGATGTGTGAGCTTCCACTGACCAGTCT  444

seq1  CAAGTGTTCACCATAAAATCTCCTGTCTTTGGCAATTATTCTCCTGAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTCACCATAAAATCTCCTGTCTTTGGCAATTATTCTCCTGAATT  494

seq1  TTTTGGAGGAGGTTCGTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTGTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGAGGTTCGTTCGTTTGTTTGTTTGTTTGTTTGTTTGTTGTTA  544

seq1  CTTGACACAGCATGCTGCTATACAGTCCAAAGTGACCTAAAACCTCCCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAGCATGCTGCTATACAGTCCAAAGTGACCTAAAACCTCCCTG  594

seq1  TGGAGTCAGGTTAGTTGAACTTGTTCTTTTTCTCAGGCTCCTAGCTGCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGGTTAGTTGAACTTGTTCTTTTTCTCAGGCTCCTAGCTGCAG  644

seq1  TGATTACACAGCTGTGTCACCATATATGGCCTTTCTCTGAACATTGTGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACACAGCTGTGTCACCATATATGGCCTTTCTCTGAACATTGTGTC  694

seq1  CTCTGGCCATGCATACCCATGCTTGGAAGATTTAGTTTCTTGATCTTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCATGCATACCCATGCTTGGAAGATTTAGTTTCTTGATCTTAAT  744

seq1  TAAGCATTCAGTTGTGCTATAGTTTAACATATTTGTTTGTTATGCTATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTCAGTTGTGCTATAGTTTAACATATTTGTTTGTTATGCTATGT  794

seq1  AGTGACTGATAAGACAGAGTCAGAGGTGGGGAGGAAAGGGAAGGTGCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGATAAGACAGAGTCAGAGGTGGGGAGGAAAGGGAAGGTGCTGA  844

seq1  GAAAGGCTATACAAGCAGGGCTTTCTTACTTAGAGTCTTCAGATCATGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTATACAAGCAGGGCTTTCTTACTTAGAGTCTTCAGATCATGGG  894

seq1  ACACCACAGACAGCACTAGGGAAATAGAGTGAGGATTTTGATTTCTTTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGACAGCACTAGGGAAATAGAGTGAGGATTTTGATTTCTTTAA  944

seq1  AAGATACAAAAATAGGAATGTGCTTCCATTTTAATCCCAGATGTGAGATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAAAAATAGGAATGTGCTTCCATTTTAATCCCAGATGTGAGATA  994

seq1  TGGGATTTCTTCATATTTCCCACAACAGCTGATCATGATTTGCCTCGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTCTTCATATTTCCCACAACAGCTGATCATGATTTGCCTCGTGC  1044

seq1  TCTAGCAGAGGTGTGATTTTGCCAACTGCAGATAGTTTCTGTGAGTGTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGAGGTGTGATTTTGCCAACTGCAGATAGTTTCTGTGAGTGTGT  1094

seq1  GACATTTGGAATTC  1111
      ||||||||||||||
seq2  GACATTTGGAATTC  1108

seq1: chr2_125938606_125939774
seq2: B6Ng01-294K09.g_69_1239

seq1  GAATTCTAGAAGTATATGACTAAGGCAACCTTTATGGTTGAATGGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAGTATATGACTAAGGCAACCTTTATGGTTGAATGGATGCA  50

seq1  TTATTGCATTAGGAGATCGCCATGATTCTATGGGAGCTTGGGGCAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCATTAGGAGATCGCCATGATTCTATGGGAGCTTGGGGCAGATGT  100

seq1  CTTTGAATACTTCATCCCTAGCTGGTGGTACTATCTTAGGAGGTATAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATACTTCATCCCTAGCTGGTGGTACTATCTTAGGAGGTATAACC  150

seq1  TGTATGTAAGAAATGAGGCCTAGCTGGCATAAGTAAGTGGCTATGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAAGAAATGAGGCCTAGCTGGCATAAGTAAGTGGCTATGGATGA  200

seq1  ACTTTCCCTGCCTCTGTCTTCTCACTGTGACAACTAGCCACAAGCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCTGCCTCTGTCTTCTCACTGTGACAACTAGCCACAAGCTTCTT  250

seq1  CACCAAGCCCAGGGCCTCAGCCACCATGCATTCTTTCACTGTGAAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCCAGGGCCTCAGCCACCATGCATTCTTTCACTGTGAAACCAT  300

seq1  GCACTAAAATAAATCTGCACTTCCTGAAGTTGTTCACTGTCCAGGATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAAATAAATCTGCACTTCCTGAAGTTGTTCACTGTCCAGGATTTG  350

seq1  GTTCTTGTGAGGAACGCACTGTGTGTTTAACTCTGCAGGTGACGTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGAGGAACGCACTGTGTGTTTAACTCTGCAGGTGACGTTCCTT  400

seq1  AAAGTGTTTACTGTGAGTCTGATCTAACGGTGACAAAGGACCTCGGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTACTGTGAGTCTGATCTAACGGTGACAAAGGACCTCGGTATT  450

seq1  GCTTGTGTTTACAGGGCTATTTCTCCATTACTGCAGGACGGTGTTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTTTACAGGGCTATTTCTCCATTACTGCAGGACGGTGTTTCCAG  500

seq1  GTAAACTCTTCTTGGTTGAAACTTATCACTCCTTCCTTAGCATACAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCTTCTTGGTTGAAACTTATCACTCCTTCCTTAGCATACAAGGC  550

seq1  TTTGAGAAGCTGCTGGAGTCCAGTGGGGATTTCCTTGTATTTGATACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGCTGCTGGAGTCCAGTGGGGATTTCCTTGTATTTGATACATT  600

seq1  GTTTCACTCTTGAACTTCATTGGCTTGGATCAGTGGTTAGTGGCCCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTCTTGAACTTCATTGGCTTGGATCAGTGGTTAGTGGCCCTTTG  650

seq1  AGATTCACGCATATACAAGTGTAAGAAGACTTGGCATGTCTTCTATAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACGCATATACAAGTGTAAGAAGACTTGGCATGTCTTCTATAACC  700

seq1  ATTTCATTGAATATTTTCTTCTCGGGTATCCACTTTCTCAAGCCAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGAATATTTTCTTCTCGGGTATCCACTTTCTCAAGCCAGAACT  750

seq1  GTGATCATGTAAAAATTTGCTCATTAAATGTATCCTAGAAATCCCACGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATGTAAAAATTTGCTCATTAAATGTATCCTAGAAATCCCACGTG  800

seq1  CTTTAATTTCATTGGTTTTTCTTTTTTCTCTGTATGATTTAAAAGGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTCATTGGTTTTTCTTTTTTCTCTGTATGATTTAAAAGGACTT  850

seq1  GTCTTCAAAAACAGTTCTTTTTCTGCTTTATATAATCTGCCAGTTCCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTTCAAAAACAGTTCTTTTTCTGCTTTATATAATCTGCCAGTTCCCT-  899

seq1  ATTTTAATTTTTTTGGTGCTAACATCTGTCAGGTTCTTTTAAAAATCATG  950
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ATTTTAATTTTTTTGGTGCTAACATCTGTCA-GTTCTTTT-AAAATCATG  947

seq1  CCTAGATTTGTTGACTCTGAAGATTCAGTCATCTCTCTGCT-CTCTAAGC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTAGATTTGTTGACTCTGAAGATTCAGTCATCTCTCTGCTCCTCTAAGC  997

seq1  CCTCTCCTTGTGCTCTCTTGAACCTCACTGGATTGCTATAAGATAATCAT  1049
      ||||  ||||||||||||||||||||||||||||||||  |||  |||| 
seq2  CCTCCTCTTGTGCTCTCTTGAACCTCACTGGATTGCTAATAGAATATCA-  1046

seq1  TTGTACAT-CCTTCTCTGGCAATA-TATAAGGGTCCAG-TTACTAGAGAA  1096
      |||||||| ||||||||||||||| |||||  |||||| ||||||| || 
seq2  TTGTACATCCCTTCTCTGGCAATATTATAA-CGTCCAGTTTACTAG-GAT  1094

seq1  TCAC-GCTGGTCCCTCA-GTGG-TGTC-ATGTTTCCTTCTTTTCTTGTAC  1142
      |||| |||| ||||||| |||| |||| ||| |||||   || |||| ||
seq2  TCACGGCTGATCCCTCAGGTGGATGTCAATGATTCCT--CTTCCTTG-AC  1141

seq1  ATCTGT-CACCCCTCATT--GAGGCCTCTT  1169
      |||||| ||||||||| |  ||| ||||||
seq2  ATCTGTACACCCCTCAATGAGAGCCCTCTT  1171