gaattcaaagatttcttctatatcatatccccaggtatgcagtgctgaaa
tttgccatcttctaaaaggggaagtaaaattttaaacatgttgaatatct
gtttcattgttcttacaatcctaagagctaaagttaaatgttattcatta
tcagaatatcatggaaattttatgagagaatggtttaggctaaaataatt
ttcatctaaagtaacaatcttaaacaggcattttaaaaactctcctaact
ttttaaatatccattaaagaaaaatttacatgtagatattaaaatttatt
ttaatacatacaaggaaacttttaacttgtacttaaacaggaatgatttt
agtaaactgttaataaatttaaataaagaaccaatgaaacatttttgcat
cctctaaaatttataaacatttaaatattacttatttgaaaaatacttta
gaaataaggagttttataataattcaatttcatgatgataaaattttgtg
agagttacttttattatttctttttgatttatttctttctccaatagcaa
tattacttatttccccaaaagacagaatgttaatatattaaaatgagaag
gaaataacagaaaatcgaagcatgaacatcggggctttaaatatatccag
ctttataaataaacaaacaaatatttaattacatacataaatgttgcaag
agaagtataattattgccttcatggtgtcaaaatgtagaatggaatatca
aaataaacataaaaggattttgtatatattaacaaaactattgaatgact
tttctttgatattttagatatggcttcaaagtattcagtgacctttctta
tgctacccataggaacaacaacaattcacacctttcatattctttctcac
atagtaatctattatatagcttaaaagggcagtttgcattgtaaatggta
tgcactgatttatgaaacctatatataatgtcagtaactgattttataat
aaacaggtatcaaggaatagaaaagtcagttagaacccttcttaataatc
caggattttatatgagaaaggaaaaattgagcattgtgtgtgtggtgatg
tgtgatagaaagactttccacactttttttcgccctgttctgtgtccagt
cgaatgcctatttcaagaacag

gaattctgttcttctggatcttaaaatctttccactttctcagcagtggt
tttgagtattatgggcaggaattgtattgtagatatactggtagggattg
gagtcctcaggtctgcattttgatcagttgtcattttctataatgttctc
tgtctgctgcaaaaaaaaatttccttgataaggagtgaaactacacttat
ctatgggtatgaggtcaaatacttattatttcctattaataaaaaaaaat
taacttgagacagggcccaagctagatatgatcttacagtttgctctgtg
aggtacagatgttttagtatcaaaaggcatcatgtaagttaactaagaag
aggaatgatcaatagtcccactaacaaatgatgcttataaatgggaataa
tagcatggtacaataataatattaagggaacaatagtgtcattcatacct
tgtggtaaacaacagctctttaattgcacttaaggtctgtttaacaatag
agaaactgtgctattgccagcaaattccacaggggtagtgaagcaataca
tcttgaaaacaaaataaagcaaaacagcaaaacacaacaaaacaaaaaca
ctaaaaaaaaattctacaattatggccaacaattcactagtaggaactca
taatactaaaaaacttttgtgcatagtttaaaaatcaatcaatccactga
agggtaagcctgacccacaatatgagagagtcattgccagttatactcct
gaagaagattaattttcaaaatatatgaataactcctcaaaaagacaaaa
caaacaaacaaaaaaaacaaacattctctttaaaaatgttcttggcatcc
aagcagagaattctcaaaaacaaaacaaaacaaaaaacgaacatacaaaa
aaacactaaaagtggctaagaagttttttgtttgttttgtttttgttgtt
tgtttaagttgctatccttagaaatcaggaaa

seq1: chr2_54785947_54787114
seq2: B6Ng01-295E16.b_46_1217

seq1  GAATTCAAAGATTTCTTCTATATCATATCCCCAGGTATGCAGTGCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATTTCTTCTATATCATATCCCCAGGTATGCAGTGCTGAAA  50

seq1  TTTGCCATCTTCTAAAAGGGGAAGTAAAATTTTAAACATGTTGAATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCTTCTAAAAGGGGAAGTAAAATTTTAAACATGTTGAATATCT  100

seq1  GTTTCATTGTTCTTACAATCCTAAGAGCTAAAGTTAAATGTTATTCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTTCTTACAATCCTAAGAGCTAAAGTTAAATGTTATTCATTA  150

seq1  TCAGAATATCATGGAAATTTTATGAGAGAATGGTTTAGGCTAAAATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATCATGGAAATTTTATGAGAGAATGGTTTAGGCTAAAATAATT  200

seq1  TTCATCTAAAGTAACAATCTTAAACAGGCATTTTAAAAACTCTCCTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAAAGTAACAATCTTAAACAGGCATTTTAAAAACTCTCCTAACT  250

seq1  TTTTAAATATCCATTAAAGAAAAATTTACATGTAGATATTAAAATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATATCCATTAAAGAAAAATTTACATGTAGATATTAAAATTTATT  300

seq1  TTAATACATACAAGGAAACTTTTAACTTGTACTTAAACAGGAATGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATACAAGGAAACTTTTAACTTGTACTTAAACAGGAATGATTTT  350

seq1  AGTAAACTGTTAATAAATTTAAATAAAGAACCAATGAAACATTTTTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTGTTAATAAATTTAAATAAAGAACCAATGAAACATTTTTGCAT  400

seq1  CCTCTAAAATTTATAAACATTTAAATATTACTTATTTGAAAAATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAATTTATAAACATTTAAATATTACTTATTTGAAAAATACTTTA  450

seq1  GAAATAAGGAGTTTTATAATAATTCAATTTCATGATGATAAAATTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGGAGTTTTATAATAATTCAATTTCATGATGATAAAATTTTGTG  500

seq1  AGAGTTACTTTTATTATTTCTTTTTGATTTATTTCTTTCTCCAATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACTTTTATTATTTCTTTTTGATTTATTTCTTTCTCCAATAGCAA  550

seq1  TATTACTTATTTCCCCAAAAGACAGAATGTTAATATATTAAAATGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTATTTCCCCAAAAGACAGAATGTTAATATATTAAAATGAGAAG  600

seq1  GAAATAACAGAAAATCGAAGCATGAACATCGGGGCTTTAAATATATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAGAAAATCGAAGCATGAACATCGGGGCTTTAAATATATCCAG  650

seq1  CTTTATAAATAAACAAACAAATATTTAATTACATACATAAATGTTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAATAAACAAACAAATATTTAATTACATACATAAATGTTGCAAG  700

seq1  AGAAGTATAATTATTGCCTTCATGGTGTCAAAATGTAGAATGGAATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATAATTATTGCCTTCATGGTGTCAAAATGTAGAATGGAATATCA  750

seq1  AAATAAACATAAAAGGATTTTGTATATATTAACAAAACTATTGAATGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACATAAAAGGATTTTGTATATATTAACAAAACTATTGAATGACT  800

seq1  TTTCTTTGATATTTTAGATATGGCTTCAAAGTATTCAGTGACC-TTCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTTTGATATTTTAGATATGGCTTCAAAGTATTCAGTGACCTTTCTTA  850

seq1  TGCTACCCATAGGAACAACAACAATTCACACC-TTCATATTCTTTCTCAC  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTACCCATAGGAACAACAACAATTCACACCTTTCATATTCTTTCTCAC  900

seq1  ATAGTAATCTATTATATAGCTTAAAAGGGCAGTTTGCATTGTAAATGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATCTATTATATAGCTTAAAAGGGCAGTTTGCATTGTAAATGGTA  950

seq1  TGCACTGATTTATG-AACCTATATATAATGTCAGTAACTGATTTTATAAT  997
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCACTGATTTATGAAACCTATATATAATGTCAGTAACTGATTTTATAAT  1000

seq1  AAACAAGTATCAA-GAATAGAAAAGTCAGTAAGAA-CCTTCTT-ATAATC  1044
      ||||| ||||||| |||||||||||||||| |||| ||||||| ||||||
seq2  AAACAGGTATCAAGGAATAGAAAAGTCAGTTAGAACCCTTCTTAATAATC  1050

seq1  CAGAATTTTATATGAGAAA-GAAAAATTGAGGCATTGTGTGTGTGTGAAT  1093
      ||| ||||||||||||||| |||||||||| ||||||||||||||   ||
seq2  CAGGATTTTATATGAGAAAGGAAAAATTGA-GCATTGTGTGTGTGGTGAT  1099

seq1  GTGTGATTAGAAAGACCTTTTCACACTTTTTTTTCGCCCTG-TCTGTGTC  1142
      |||||| |||||||| |||| ||||| |||||||||||||| ||||||||
seq2  GTGTGA-TAGAAAGA-CTTTCCACAC-TTTTTTTCGCCCTGTTCTGTGTC  1146

seq1  AAGTCAAAATGCTATTTCAAGAACAG  1168
       |||| ||   |||||||||||||||
seq2  CAGTCGAATGCCTATTTCAAGAACAG  1172

seq1: chr2_5750986_5751286
seq2: B6Ng01-295E16.g_852_1021

seq1  CTCAAAAATACAAAACAAAACAAACAAAAAACAAAAAAAAAACCAAACAA  50
      |||||||| ||||||| |||||||||||||              ||||||
seq2  CTCAAAAAGACAAAAC-AAACAAACAAAAA--------------AAACAA  35

seq1  ACAAAAAAATCCACCCCAAACCATATCTATTTATTTATTTGTCTAATGTA  100
      |||                      ||| ||||                |
seq2  ACA---------------------TTCTCTTTA---------------AA  49

seq1  TAAGTTTATGGCAATGTGTATGTAGTGTATAAGTTTAGTTGCAATATGTG  150
       | |||  |||||                          | |||      
seq2  AATGTTCTTGGCA--------------------------TCCAA------  67

seq1  TGTAGGAGGCCAGAAGCCATAGAGCATGAAATCTCCTGGAGTTACAAGTG  200
                ||||             ||| ||||    |   ||||   
seq2  ---------GCAGA-------------GAATTCTC----AAAAACAA---  88

seq1  GTTGTATGCCACTTGACACAAATGCTGGGAACTGAACCCAGGAATTCTGT  250
                ||   ||| |||      ||||   |  ||  ||  |  |
seq2  ---------AACAAAACAAAAA----ACGAAC---ATACAAAAAAACACT  122

seq1  ATTAATGG-TAAGCATTTTTTTTTTTGTTTGTTTTGTTTTGTGTT-TTTG  298
      |  | ||| |||| |     |||||||||||||||||||| |||| ||||
seq2  AAAAGTGGCTAAGAA----GTTTTTTGTTTGTTTTGTTTT-TGTTGTTTG  167

seq1  TTT  301
      |||
seq2  TTT  170