BAC Information

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BAC

Clone NameB6Ng01-295L15
Chromosome2 (Build37)
Map Location 75,858,372 - 75,975,182
singlet/doubletdoublet
Overlap genePde11a
Upstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L15.bB6Ng01-295L15.g
ACCGA091520GA091521
length1,1371,150
definitionB6Ng01-295L15.b B6Ng01-295L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,858,372 - 75,859,503)(75,974,038 - 75,975,182)
sequence
gaattcctgagttatatggtaactccattttgaactttttatattaatta
gacattctttttaaattgatgatggtggtgatgatgatgatgatggcggg
tgtgcagaggtgagaggacagccttccggagttggctctctcctttctca
gtgcgatccaggggttgaactcaggttgggtcttgcacagtctatacttc
acccaccctgccatcttgccagcactatgtctaactttctgagggatttg
aggctggtttttaaagtagctgcactagcctcttacatttcttctcatgt
ctcacagagtcctctgaaaacatactagtgtttgtactgtctgtctttta
aataatggtcctcttcgtgagtgtgatgtggtacctcacggtggctccaa
tttgcgttttcgtgatggttaaagattcttaacaatctttttgtgtgctt
attggctatgtgcttgttcacgagcatgctcataagtgaaatgtgtgctt
aagtgcttattcgtgagtatttcccaacagctgacgagggcctagggtcc
ttaatgacagggaggatggtgtcccatcttccctgtttgcaagcaagctc
accgcccctaacacgaaccctctggctgtggtccagccagcttcagcatg
gtctcagaaagttaccggggtgatctctggaccatacatggtaggggtga
tttctaaaaaccaaaggatgagaaagcaagtagtgtcagctctgggcaca
ttacagacatttctgatgctgggtccatgagggaaagctagactcatcct
gagaagacagctatgttaagtagcctctttgtgaggagaaagtagcattt
atagctatagatccaccatgaaattaattttcatttatgtctcaagagaa
aggccttagctgagcctacagaagaaaggctcctcagtcctgcaacgctg
cacctgccagctccgaacaaccgggccatttatttttttctccaatttaa
ctaaatgaccctatgctgccgcttgtaaaccctgcagagaagtgagtgcc
caagaacgattttagagggaaggaaaagcctttaatttaatgtagctggt
agccctagaagaaatgtggctaaatgttttacaaatg
gaattccattctataccctccagttcagcccagtattaaccatcctggtg
ttcacacacgttcagtcatggaacccttagccaggtctgtcttccttgtc
tgccttcagttcacaagcttctgttcccgttgtctccagcagaagagctt
ggctttcctgtgcttttcatggactgtgccaggacccaacaaaaactatt
attgtcattgcagctttctccgcagctggctctaagtcagtctgcttgac
tttagccccaaccttgtggtttctcttacttagtttcttggccaaaatat
tttatagccttgctattgaaaggggctgcttttcgtttaaaaaaaaaagc
agaataatagtaaaaacagtctactgcccaaataaattaaaggcacattg
aaacacattgtacgctttcaaatgtatgaagatattttttcacaatatca
ttaaaataatgatttcttttctcatgtgtagtgtgagctataaagtcctt
acatgacaatagtaattaagaattttaatgcacgtgtccctgaggcccac
ctctaagcacaataaaattatatttttggaactgtctctggtgactgcct
gctttcatattagatcttgactgtgagttattacggtttttaattaacag
gctttctgtgtcctaggcctttgtcatcttttgtggccttggtattaaca
acacaattatgtacgatcaagtgaagaagtcctgggccaagcagtctgtg
gcccttgatgtaagtacagtatcctgtcagcatcctatgctgaaaggcct
tgattttatgaggtgaaaagttgtcctgctcatgggacttgattttttaa
atgcttcttttttatggttaagatgggttgcttattacttgtctttcttc
ttgcatgacttataaataaatacattagaaattccgaatgcttcagaatc
tttttagagcactgggtctcaacctttccctaacaaatggtggcctttat
acagcttctcgtgtgtgattttaaagggctctcgtcactgggtctcaatt
ctttttatagtctgggttactttgggcaacatgcagaccctctctggaaa
acctttattagttgcctgtgatggcagactggggggaaattcttgggagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75858372_75859503
seq2: B6Ng01-295L15.b_48_1184

seq1  GAATTCCTGAGTTATATGGTAACTCCATTTTGAACTTTTTATATTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTTATATGGTAACTCCATTTTGAACTTTTTATATTAATTA  50

seq1  GACATTCTTTTTAAATTGATGATGGTGGTGATGATGATGATGATGGCGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTTTTAAATTGATGATGGTGGTGATGATGATGATGATGGCGGG  100

seq1  TGTGCAGAGGTGAGAGGACAGCCTTCCGGAGTTGGCTCTCTCCTTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGAGGTGAGAGGACAGCCTTCCGGAGTTGGCTCTCTCCTTTCTCA  150

seq1  GTGCGATCCAGGGGTTGAACTCAGGTTGGGTCTTGCACAGTCTATACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGATCCAGGGGTTGAACTCAGGTTGGGTCTTGCACAGTCTATACTTC  200

seq1  ACCCACCCTGCCATCTTGCCAGCACTATGTCTAACTTTCTGAGGGATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCTGCCATCTTGCCAGCACTATGTCTAACTTTCTGAGGGATTTG  250

seq1  AGGCTGGTTTTTAAAGTAGCTGCACTAGCCTCTTACATTTCTTCTCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTTTTTAAAGTAGCTGCACTAGCCTCTTACATTTCTTCTCATGT  300

seq1  CTCACAGAGTCCTCTGAAAACATACTAGTGTTTGTACTGTCTGTCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGTCCTCTGAAAACATACTAGTGTTTGTACTGTCTGTCTTTTA  350

seq1  AATAATGGTCCTCTTCGTGAGTGTGATGTGGTACCTCACGGTGGCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGTCCTCTTCGTGAGTGTGATGTGGTACCTCACGGTGGCTCCAA  400

seq1  TTTGCGTTTTCGTGATGGTTAAAGATTCTTAACAATCTTTTTGTGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTTTTCGTGATGGTTAAAGATTCTTAACAATCTTTTTGTGTGCTT  450

seq1  ATTGGCTATGTGCTTGTTCACGAGCATGCTCATAAGTGAAATGTGTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTATGTGCTTGTTCACGAGCATGCTCATAAGTGAAATGTGTGCTT  500

seq1  AAGTGCTTATTCGTGAGTATTTCCCAACAGCTGACGAGGGCCTAGGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTATTCGTGAGTATTTCCCAACAGCTGACGAGGGCCTAGGGTCC  550

seq1  TTAATGACAGGGAGGATGGTGTCCCATCTTCCCTGTTTGCAAGCAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACAGGGAGGATGGTGTCCCATCTTCCCTGTTTGCAAGCAAGCTC  600

seq1  ACCGCCCCTAACACGAACCCTCTGGCTGTGGTCCAGCCAGCTTCAGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCCTAACACGAACCCTCTGGCTGTGGTCCAGCCAGCTTCAGCATG  650

seq1  GTCTCAGAAAGTTACCGGGGTGATCTCTGGACCATACATGGTAGGGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAAGTTACCGGGGTGATCTCTGGACCATACATGGTAGGGGTGA  700

seq1  TTTCTAAAAACCAAAGGATGAGAAAGCAAGTAGTGTCAGCTCTGGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAACCAAAGGATGAGAAAGCAAGTAGTGTCAGCTCTGGGCACA  750

seq1  TTACAGACATTTCTGATGCTGGGTCCATGAGGGAAAGCTAGACTCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACATTTCTGATGCTGGGTCCATGAGGGAAAGCTAGACTCATCCT  800

seq1  GAGAAGACAGCTATGTTAAGTAGCCTC-TTGTGAGGAGAAAGTAGCATTT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGAAGACAGCTATGTTAAGTAGCCTCTTTGTGAGGAGAAAGTAGCATTT  850

seq1  ATAGCTATAGATCCACCATGAAATTAA-TTTCATTTATGTCTCAAGAG-A  897
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  ATAGCTATAGATCCACCATGAAATTAATTTTCATTTATGTCTCAAGAGAA  900

seq1  AGGCCTTAGCTGAGCCTACAG-AGAAAGGCTCCTCAGTCCTGCAACGCTG  946
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGCCTTAGCTGAGCCTACAGAAGAAAGGCTCCTCAGTCCTGCAACGCTG  950

seq1  CACCTGCCAGCTCCGAACA--CCGGCCATTTATTTTTTTCTCCCATTTAA  994
      |||||||||||||||||||  | |||||||||||||||||||| ||||||
seq2  CACCTGCCAGCTCCGAACAACCGGGCCATTTATTTTTTTCTCCAATTTAA  1000

seq1  CTAAATGA-CCTATGCTGCCGCCTTGTAAACCCTGCAGAG-AGTGAGTGC  1042
      |||||||| |||||||||||| |||||||||||||||||| |||||||| 
seq2  CTAAATGACCCTATGCTGCCG-CTTGTAAACCCTGCAGAGAAGTGAGTG-  1048

seq1  CCCAAGAACGATTTTTAGAGGGAAGGAAAAGCTTTTATTTTAATGTAGCT  1092
      ||||||||||| |||||||||||||||||||| |||| ||||||||||||
seq2  CCCAAGAACGA-TTTTAGAGGGAAGGAAAAGCCTTTAATTTAATGTAGCT  1097

seq1  GTGTAG-CCTAG-AGAAATGTGGGTTATAGGTTTTACAAATG  1132
      | |||| ||||| |||||||| || || | ||||||||||||
seq2  G-GTAGCCCTAGAAGAAATGT-GGCTAAATGTTTTACAAATG  1137

seq1: chr2_75974038_75975182
seq2: B6Ng01-295L15.g_69_1218 (reverse)

seq1  GCTCCCAAGAAT---CCCCCAGTTCCCTGCCATTACAGGCAAC-ACTATA  46
      ||||||||||||   ||||||||   ||||||| ||||||||| | || |
seq2  GCTCCCAAGAATTTCCCCCCAGT---CTGCCATCACAGGCAACTAATA-A  46

seq1  TAGTTTTCAAGAGAGGGTCTCCATTTGTTGCCCAAGTAAACCCAAGACTA  96
        |||||| ||||||||||| ||  ||||||||||   ||||| ||||||
seq2  AGGTTTTCCAGAGAGGGTCTGCA--TGTTGCCCAAAGTAACCC-AGACTA  93

seq1  T-AAAAGAATTGAGACCCAGTGACGAGAGCCCTTTAAAATCACCACACGA  145
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAAAGAATTGAGACCCAGTGACGAGAGCCCTTTAAAATCA-CACACGA  142

seq1  GAAGCTGTATTAAAGGCCAC--ATTGTTAGG--AAGGTTGAGGACCAGTG  191
      ||||||||| ||||||||||   ||||||||  |||||||||  ||||||
seq2  GAAGCTGTA-TAAAGGCCACCATTTGTTAGGGAAAGGTTGAGACCCAGTG  191

seq1  CTCT-AAAAGATTCTG-AGCATTCGGAA-TTCTAATGTATTTA-TTATAA  237
      |||| ||||||||||| ||||||||||| |||||||||||||| ||||||
seq2  CTCTAAAAAGATTCTGAAGCATTCGGAATTTCTAATGTATTTATTTATAA  241

seq1  GTCATGCAAGAAGAAAGACAAGTAATAAGCAA-CCATCTTAACCATAAAA  286
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCATGCAAGAAGAAAGACAAGTAATAAGCAACCCATCTTAACCATAAAA  291

seq1  AAGAAGCATTTAAAAAATCAAGTCCCATGAGCAGGACAACTTTTCACCTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCATTTAAAAAATCAAGTCCCATGAGCAGGACAACTTTTCACCTC  341

seq1  ATAAAATCAAGGCCTTTCAGCATAGGATGCTGACAGGATACTGTACTTAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCAAGGCCTTTCAGCATAGGATGCTGACAGGATACTGTACTTAC  391

seq1  ATCAAGGGCCACAGACTGCTTGGCCCAGGACTTCTTCACTTGATCGTACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGCCACAGACTGCTTGGCCCAGGACTTCTTCACTTGATCGTACA  441

seq1  TAATTGTGTTGTTAATACCAAGGCCACAAAAGATGACAAAGGCCTAGGAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGTTGTTAATACCAAGGCCACAAAAGATGACAAAGGCCTAGGAC  491

seq1  ACAGAAAGCCTGTTAATTAAAAACCGTAATAACTCACAGTCAAGATCTAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCCTGTTAATTAAAAACCGTAATAACTCACAGTCAAGATCTAA  541

seq1  TATGAAAGCAGGCAGTCACCAGAGACAGTTCCAAAAATATAATTTTATTG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGCAGGCAGTCACCAGAGACAGTTCCAAAAATATAATTTTATTG  591

seq1  TGCTTAGAGGTGGGCCTCAGGGACACGTGCATTAAAATTCTTAATTACTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGAGGTGGGCCTCAGGGACACGTGCATTAAAATTCTTAATTACTA  641

seq1  TTGTCATGTAAGGACTTTATAGCTCACACTACACATGAGAAAAGAAATCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTAAGGACTTTATAGCTCACACTACACATGAGAAAAGAAATCA  691

seq1  TTATTTTAATGATATTGTGAAAAAATATCTTCATACATTTGAAAGCGTAC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAATGATATTGTGAAAAAATATCTTCATACATTTGAAAGCGTAC  741

seq1  AATGTGTTTCAATGTGCCTTTAATTTATTTGGGCAGTAGACTGTTTTTAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTCAATGTGCCTTTAATTTATTTGGGCAGTAGACTGTTTTTAC  791

seq1  TATTATTCTGCTTTTTTTTTTAAACGAAAAGCAGCCCCTTTCAATAGCAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTGCTTTTTTTTTTAAACGAAAAGCAGCCCCTTTCAATAGCAA  841

seq1  GGCTATAAAATATTTTGGCCAAGAAACTAAGTAAGAGAAACCACAAGGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAAATATTTTGGCCAAGAAACTAAGTAAGAGAAACCACAAGGTT  891

seq1  GGGGCTAAAGTCAAGCAGACTGACTTAGAGCCAGCTGCGGAGAAAGCTGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAAGTCAAGCAGACTGACTTAGAGCCAGCTGCGGAGAAAGCTGC  941

seq1  AATGACAATAATAGTTTTTGTTGGGTCCTGGCACAGTCCATGAAAAGCAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAATAATAGTTTTTGTTGGGTCCTGGCACAGTCCATGAAAAGCAC  991

seq1  AGGAAAGCCAAGCTCTTCTGCTGGAGACAACGGGAACAGAAGCTTGTGAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCCAAGCTCTTCTGCTGGAGACAACGGGAACAGAAGCTTGTGAA  1041

seq1  CTGAAGGCAGACAAGGAAGACAGACCTGGCTAAGGGTTCCATGACTGAAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCAGACAAGGAAGACAGACCTGGCTAAGGGTTCCATGACTGAAC  1091

seq1  GTGTGTGAACACCAGGATGGTTAATACTGGGCTGAACTGGAGGGTATAGA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAACACCAGGATGGTTAATACTGGGCTGAACTGGAGGGTATAGA  1141

seq1  ATGGAATTC  1145
      |||||||||
seq2  ATGGAATTC  1150