BAC Information

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BAC

Clone NameB6Ng01-295M12
Chromosome2 (Build37)
Map Location 52,324,227 - 52,426,780
singlet/doubletdoublet
Overlap geneCacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295M12.bB6Ng01-295M12.g
ACCGA091562GA091563
length7261,164
definitionB6Ng01-295M12.b B6Ng01-295M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,324,227 - 52,324,952)(52,425,624 - 52,426,780)
sequence
gaattctaacatatatgaaattggcgcttcacagagagcagcggcacggc
atccaagcagcactgggtctgtgtggcttggactcctctccggctgtgct
cacactgctgggacctgccactggcacaccgtttcttttgaacactagag
gctagtctgtcatagctccctggtgtcatcagcacagggcaagcagaaga
tggcacaggagcccaggtagaggaagggaccccggggactgtccacatac
tgagcccaccagacagagtctttgacagggacccaagcaaaacaccaact
ctaggtcatgtcagctgccacctgagctgtcctgagaagtgaggccctgt
gtgactctcacagaagaaaacagggtttggagatgggtttactgagtact
gtggaattcacgtgggtttctaaggagctaggggtcagagcacagtggaa
acagttaaacctgaagcctttgtatcctcctcaagaatagcatgtatgca
ggggagtgtctctttgctttaaaagcgggttttcattggggtcccagcaa
agagaattggaaagaacccaacttcctgaatgaaaaaaagaatccaacag
aaaacagaggttgagtcaaaagaataaactgctttatccagttttaaatt
aaaaacaaaaacaacttgacaatattgcccaattttcccaccaaaaagtg
gggaaggaaggagggagggagggagg
gaattcactggaacccccattttatttaccaaagtaaaaccagtcccttg
ctcttcttgctgggaaatcaagtgcaaattttccacagtctttggctcac
ccatgccctctgacccaatagttactgcacacacacgttgtcagcactta
catttctcccctatctattcttccatgacgggttctggggtagtaggagt
ggccacgtttagcacctgagaggagaaggaagaaacataaaaataactca
tgaagagctccccgtgctagtgattgctaagagttcatttagacccctca
tcctcctaggatggtagctgtcaatctgccttccctggtctggtccctct
gcttgtcccacccagggaggaattgtttgcagctactacacttggtccag
cacagcggaagtagctgattgcctgggcttttcttatgctagtagatacc
agctaaatagattatgccactgttgacaggcagataacttttccctatct
ccttctctttattctccctggagtgttagacaacctagtttgaagagtgt
gcagaggtgagctccttccatttcaggtggagtatgctacatacaacatc
accttcaatagccacagacggttccagtgtgcttaacaggggggcataag
tggcagtttgaagatgcatgggggattcaaggtgggttggaggacccact
gtggtttcatatttgtgtaaacttcactgtaaatcagcagttaataggga
ctcatatgcctggcccacagactgcagaagagtctctgtattgaaagaat
tggcagtttgaaaattcataccaggcgtgctcatcttctctgtgtcaaca
cttcagctaggcgctgggtgcgtcgccgtttagatgacttccttttcctg
taaaggaagaacgttcttagaaatgagactaacagccgtgatcaaggttg
tatcacggaggaaatggcgcttttacaggctgatgcttcacgggatgtat
ggtcagacccgtggagccaaattaatacttttgggaataaaaaaacaaat
gttcttatcatatactgatgactgtatggccatccaatttaatgcatgtg
gatatcaaactaggagtgatctaagcaatgttccagtcagaatgccccaa
gttagagagtagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52324227_52324952
seq2: B6Ng01-295M12.b_49_774

seq1  GAATTCTAACATATATGAAATTGGCGCTTCACAGAGAGCAGCGGCACGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACATATATGAAATTGGCGCTTCACAGAGAGCAGCGGCACGGC  50

seq1  ATCCAAGCAGCACTGGGTCTGTGTGGCTTGGACTCCTCTCCGGCTGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCAGCACTGGGTCTGTGTGGCTTGGACTCCTCTCCGGCTGTGCT  100

seq1  CACACTGCTGGGACCTGCCACTGGCACACCGTTTCTTTTGAACACTAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCTGGGACCTGCCACTGGCACACCGTTTCTTTTGAACACTAGAG  150

seq1  GCTAGTCTGTCATAGCTCCCTGGTGTCATCAGCACAGGGCAAGCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCTGTCATAGCTCCCTGGTGTCATCAGCACAGGGCAAGCAGAAGA  200

seq1  TGGCACAGGAGCCCAGGTAGAGGAAGGGACCCCGGGGACTGTCCACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGGAGCCCAGGTAGAGGAAGGGACCCCGGGGACTGTCCACATAC  250

seq1  TGAGCCCACCAGACAGAGTCTTTGACAGGGACCCAAGCAAAACACCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCACCAGACAGAGTCTTTGACAGGGACCCAAGCAAAACACCAACT  300

seq1  CTAGGTCATGTCAGCTGCCACCTGAGCTGTCCTGAGAAGTGAGGCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCATGTCAGCTGCCACCTGAGCTGTCCTGAGAAGTGAGGCCCTGT  350

seq1  GTGACTCTCACAGAAGAAAACAGGGTTTGGAGATGGGTTTACTGAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTCACAGAAGAAAACAGGGTTTGGAGATGGGTTTACTGAGTACT  400

seq1  GTGGAATTCACGTGGGTTTCTAAGGAGCTAGGGGTCAGAGCACAGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTCACGTGGGTTTCTAAGGAGCTAGGGGTCAGAGCACAGTGGAA  450

seq1  ACAGTTAAACCTGAAGCCTTTGTATCCTCCTCAAGAATAGCATGTATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAACCTGAAGCCTTTGTATCCTCCTCAAGAATAGCATGTATGCA  500

seq1  GGGGAGTGTCTCTTTGCTTTAAAAGCGGGTTTTCATTGGGGTCCCAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGTCTCTTTGCTTTAAAAGCGGGTTTTCATTGGGGTCCCAGCAA  550

seq1  AGAGAATTGGAAAGAACCCAACTTCCTGAATGAAAAAAAGAATCCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTGGAAAGAACCCAACTTCCTGAATGAAAAAAAGAATCCAACAG  600

seq1  AAAACAGAGGTTGAGTCAAAAGAATAAACTGCTTTATCCAGTTTTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGGTTGAGTCAAAAGAATAAACTGCTTTATCCAGTTTTAAATT  650

seq1  AAAAACAAAAACAACTTGACAATATTGCCCAATTTTCCCACCAAAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAACTTGACAATATTGCCCAATTTTCCCACCAAAAAGTG  700

seq1  GGGAAGGAAGGAGGGAGGGAGGGAGG  726
      ||||||||||||||||||||||||||
seq2  GGGAAGGAAGGAGGGAGGGAGGGAGG  726

seq1: chr2_52425624_52426780
seq2: B6Ng01-295M12.g_68_1231 (reverse)

seq1  AACTACTCT---ACT--GGGCA-TCTGACTGGGAAACCATTGGCTTAGGA  44
      |||||||||   |||  ||||| |||||||||   | |||| ||||| ||
seq2  AACTACTCTCTAACTTGGGGCATTCTGACTGG---AACATT-GCTTA-GA  45

seq1  TCACT-CTAGTTTGATAT-CACATGCATTAAA-TGGATGGGCATACAGTC  91
      ||||| |||||||||||| ||||||||||||| ||||||| |||||||||
seq2  TCACTCCTAGTTTGATATCCACATGCATTAAATTGGATGGCCATACAGTC  95

seq1  ATCAGTATATGAATAAG-ACATTTG-TTTTTTATTCCCAAAAGTA-TAAT  138
      ||||||||||| ||||| ||||||| ||||||||||||||||||| ||||
seq2  ATCAGTATATG-ATAAGAACATTTGTTTTTTTATTCCCAAAAGTATTAAT  144

seq1  TTTGCTCCACGGGTCTGACCATACAT-CCGTGAAGCATCAGCCTGTAAAA  187
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGGCTCCACGGGTCTGACCATACATCCCGTGAAGCATCAGCCTGTAAAA  194

seq1  GCGCCATTTCCTCCGTGATACAACCTTGATCACGGCTGTTAGTCTCATTT  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCATTTCCTCCGTGATACAACCTTGATCACGGCTGTTAGTCTCATTT  244

seq1  CTAAGAACGTTCTTCCTTTACAGGAAAAGGAAGTCATCTAAACGGCGACG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACGTTCTTCCTTTACAGGAAAAGGAAGTCATCTAAACGGCGACG  294

seq1  CACCCAGCGCCTAGCTGAAGTGTTGACACAGAGAAGATGAGCACGCCTGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCGCCTAGCTGAAGTGTTGACACAGAGAAGATGAGCACGCCTGG  344

seq1  TATGAATTTTCAAACTGCCAATTCTTTCAATACAGAGACTCTTCTGCAGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTTCAAACTGCCAATTCTTTCAATACAGAGACTCTTCTGCAGT  394

seq1  CTGTGGGCCAGGCATATGAGTCCCTATTAACTGCTGATTTACAGTGAAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCCAGGCATATGAGTCCCTATTAACTGCTGATTTACAGTGAAGT  444

seq1  TTACACAAATATGAAACCACAGTGGGTCCTCCAACCCACCTTGAATCCCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAATATGAAACCACAGTGGGTCCTCCAACCCACCTTGAATCCCC  494

seq1  CATGCATCTTCAAACTGCCACTTATGCCCCCCTGTTAAGCACACTGGAAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCTTCAAACTGCCACTTATGCCCCCCTGTTAAGCACACTGGAAC  544

seq1  CGTCTGTGGCTATTGAAGGTGATGTTGTATGTAGCATACTCCACCTGAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTGGCTATTGAAGGTGATGTTGTATGTAGCATACTCCACCTGAAA  594

seq1  TGGAAGGAGCTCACCTCTGCACACTCTTCAAACTAGGTTGTCTAACACTC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAGCTCACCTCTGCACACTCTTCAAACTAGGTTGTCTAACACTC  644

seq1  CAGGGAGAATAAAGAGAAGGAGATAGGGAAAAGTTATCTGCCTGTCAACA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGAATAAAGAGAAGGAGATAGGGAAAAGTTATCTGCCTGTCAACA  694

seq1  GTGGCATAATCTATTTAGCTGGTATCTACTAGCATAAGAAAAGCCCAGGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAATCTATTTAGCTGGTATCTACTAGCATAAGAAAAGCCCAGGC  744

seq1  AATCAGCTACTTCCGCTGTGCTGGACCAAGTGTAGTAGCTGCAAACAATT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTACTTCCGCTGTGCTGGACCAAGTGTAGTAGCTGCAAACAATT  794

seq1  CCTCCCTGGGTGGGACAAGCAGAGGGACCAGACCAGGGAAGGCAGATTGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGGGTGGGACAAGCAGAGGGACCAGACCAGGGAAGGCAGATTGA  844

seq1  CAGCTACCATCCTAGGAGGATGAGGGGTCTAAATGAACTCTTAGCAATCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCATCCTAGGAGGATGAGGGGTCTAAATGAACTCTTAGCAATCA  894

seq1  CTAGCACGGGGAGCTCTTCATGAGTTATTTTTATGTTTCTTCCTTCTCCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACGGGGAGCTCTTCATGAGTTATTTTTATGTTTCTTCCTTCTCCT  944

seq1  CTCAGGTGCTAAACGTGGCCACTCCTACTACCCCAGAACCCGTCATGGAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCTAAACGTGGCCACTCCTACTACCCCAGAACCCGTCATGGAA  994

seq1  GAATAGATAGGGGAGAAATGTAAGTGCTGACAACGTGTGTGTGCAGTAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATAGGGGAGAAATGTAAGTGCTGACAACGTGTGTGTGCAGTAAC  1044

seq1  TATTGGGTCAGAGGGCATGGGTGAGCCAAAGACTGTGGAAAATTTGCACT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTCAGAGGGCATGGGTGAGCCAAAGACTGTGGAAAATTTGCACT  1094

seq1  TGATTTCCCAGCAAGAAGAGCAAGGGACTGGTTTTACTTTGGTAAATAAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCCAGCAAGAAGAGCAAGGGACTGGTTTTACTTTGGTAAATAAA  1144

seq1  ATGGGGGTTCCAGTGAATTC  1157
      ||||||||||||||||||||
seq2  ATGGGGGTTCCAGTGAATTC  1164