BAC Information

Click to search

BAC

Clone NameB6Ng01-295N07
Chromosome2 (Build37)
Map Location 105,181,858 - 105,334,235
singlet/doubletdoublet
Overlap gene0610012H03Rik, Rcn1
Upstream geneD430041D05Rik, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5, 9330126M15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295N07.bB6Ng01-295N07.g
ACCGA091600GA091601
length1,1201,150
definitionB6Ng01-295N07.b B6Ng01-295N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,333,126 - 105,334,235)(105,181,858 - 105,182,998)
sequence
gaattctaggtgctactgtgtgaacagctataagtcagttgtccaaggaa
tactgcttcttcagccttctagtgtggactaaagaccagcagccctacag
gcctcccccaggcctccattgccagattgggacatccagcctcagctcct
gggatgtcagggtctccattgtgaagacatcattggagtactcaccctgt
cctgtaaatcaatccaatttcaatataaattcactttgttggtcttcctc
ctatttcaaaggcagcacagtcacacagttgtcttccaatggaataatta
tctattgatttccaatgctcagttgctattgttcaatgctattgctgctg
ctgttgctactcctactcctacttatttatttatttattcttagttttgg
ctactctgttcaagcaaatcttgtagactcatgttaaaggacaagaacag
agctgtcctatagtagaacaggctttcaggcttgttccttgaatgcacct
cccctatctgggtgtggggttccttgaactgagctcatccacagtactac
ttagccagtgggtgatgaggactatggcagatagctgcgagtccaattga
gatgctattactgctaggcttttcaatgagctgaacaacttcagatgcag
taactgatgggggtcagtctgaagccctggaggaagaggtgatattctgt
ccttggggatgctacagtaggcagacatgaccctgcaaatgacacaccaa
taaacacaggaaatgtgtttcttgtttatcacaaagaagtcaattttttt
tattgtcccagaggacagttctggcagggtgaggctgaaggaatggtaca
gctgcttagagcacatagtataattgtagaggaccaaagcgttcagttcc
caacacccaaggagcttcttataacccaactgtaattccagatccagggg
atctgaacccttcttctgggcctccacaggtgtgagcacataaataaaag
gtaaagtcctccccatctctccccaagtaattaaaagaaatccttggcaa
actgatctccatagattcctgaccctcttctgaagaactgaagacaggga
aaactcggcctgccagggtt
gaattcacataggtaaacatacggacatactgatattcctagggttcact
ctctgctagctagcagatatatatatattttttttagtccccctatttag
aaaatggtttggtgataccaaagccttttttctttcattcatcattcagg
gcatttcctttgcatctggctcttagctcagtgctgggattcaataatgt
aaagtgcttagctttgtctaatgtatgtgcatagcacgtacacatctgca
tgtgcatctatgcatgaacaactctcttgtccttaatgctcttggccctc
tgttcagctcttagtgaggaaatactgccttattgcctccttggacagac
tgaagaaaccgcatatgtaaacatattttccttacccagccctgaaacga
agttgatgtcagctggattcaggaggccgtgtcttcgttcagcctgttgg
accagcagttgaacacaggcgagtgcttccgttgactgcgttacccagat
ctgcctacattttaaagcttaatatggacagatgactggcccacatcaca
atcatgggatctgtgatgccctcatccttcccccctacccccccgccaaa
atttggttcgatcttcttattcacagcctcaaagaagctcaaaggatgga
tggcatggactgccatttaagaagaaataattaaatcaaacccagtgatc
cttagctgaatcttgtaaatgaccagctttccaggatggcagtttacaga
gttttctgaatggcaaaactgaaggtttggccatttcattcgtttgagag
cttcacggaaatcagaactttggtactttgaaagtggttttcagttttga
catttgctacaaattactttctgaagttaaactattccaatgtgggcctg
tcagaaaaatcttaggcatcgcgggatgttctttattccctgttcctggt
tagcgctcaggcaccgaaactttccagaatcgtgagtgaggccaggtgtt
ttactactcatggagagatgttgggaacttgtagccttcctgctccacgg
caactcttctccaattcaccgaagcttggatgacacttagagattgccag
gttaataagaaattgcatcgaattcccgaaattcattcaactgcttctgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105333126_105334235
seq2: B6Ng01-295N07.b_50_1169 (reverse)

seq1  AACCCT-GCAGGCCGAG-TTTCCCTGTC-TCAG-TCTTCAGAAGAGGGTC  46
      |||||| |||||||||| |||||||||| |||| ||||||||||||||||
seq2  AACCCTGGCAGGCCGAGTTTTCCCTGTCTTCAGTTCTTCAGAAGAGGGTC  50

seq1  AGGAATCTATGGAGATCAGTTTGCC-AGGATTTCTTTTAATTACTTGGGG  95
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAATCTATGGAGATCAGTTTGCCAAGGATTTCTTTTAATTACTTGGGG  100

seq1  AGAGATGGGGA-GACTTTACCTTTTATTTATGTGCTCACACCTGTGGAGG  144
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGGAGGACTTTACCTTTTATTTATGTGCTCACACCTGTGGAGG  150

seq1  -CCAGAAG-AGGGTTCAGATCCCCTGGATCTGGAATTACAGTT-GGTTAT  191
       ||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CCCAGAAGAAGGGTTCAGATCCCCTGGATCTGGAATTACAGTTGGGTTAT  200

seq1  AAGAAGCTCC-TGGGTGTTGGGAACTGAACGCTTTGGTCCTCTACAATTA  240
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTCCTTGGGTGTTGGGAACTGAACGCTTTGGTCCTCTACAATTA  250

seq1  TACTATGTGCTCTAAGCAGCTGTACCATTCCTTCAGCCTCACCCTGCCAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTGCTCTAAGCAGCTGTACCATTCCTTCAGCCTCACCCTGCCAG  300

seq1  AACTGTCCTCTGGGACAATAAAAAAAATTGACTTCTTTGTGATAAACAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCTCTGGGACAATAAAAAAAATTGACTTCTTTGTGATAAACAAG  350

seq1  AAACACATTTCCTGTGTTTATTGGTGTGTCATTTGCAGGGTCATGTCTGC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTCCTGTGTTTATTGGTGTGTCATTTGCAGGGTCATGTCTGC  400

seq1  CTACTGTAGCATCCCCAAGGACAGAATATCACCTCTTCCTCCAGGGCTTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAGCATCCCCAAGGACAGAATATCACCTCTTCCTCCAGGGCTTC  450

seq1  AGACTGACCCCCATCAGTTACTGCATCTGAAGTTGTTCAGCTCATTGAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCCCCATCAGTTACTGCATCTGAAGTTGTTCAGCTCATTGAAA  500

seq1  AGCCTAGCAGTAATAGCATCTCAATTGGACTCGCAGCTATCTGCCATAGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCAGTAATAGCATCTCAATTGGACTCGCAGCTATCTGCCATAGT  550

seq1  CCTCATCACCCACTGGCTAAGTAGTACTGTGGATGAGCTCAGTTCAAGGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCACCCACTGGCTAAGTAGTACTGTGGATGAGCTCAGTTCAAGGA  600

seq1  ACCCCACACCCAGATAGGGGAGGTGCATTCAAGGAACAAGCCTGAAAGCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACACCCAGATAGGGGAGGTGCATTCAAGGAACAAGCCTGAAAGCC  650

seq1  TGTTCTACTATAGGACAGCTCTGTTCTTGTCCTTTAACATGAGTCTACAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTACTATAGGACAGCTCTGTTCTTGTCCTTTAACATGAGTCTACAA  700

seq1  GATTTGCTTGAACAGAGTAGCCAAAACTAAGAATAAATAAATAAATAAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTTGAACAGAGTAGCCAAAACTAAGAATAAATAAATAAATAAGT  750

seq1  AGGAGTAGGAGTAGCAACAGCAGCAGCAATAGCATTGAACAATAGCAACT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGAGTAGCAACAGCAGCAGCAATAGCATTGAACAATAGCAACT  800

seq1  GAGCATTGGAAATCAATAGATAATTATTCCATTGGAAGACAACTGTGTGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTGGAAATCAATAGATAATTATTCCATTGGAAGACAACTGTGTGA  850

seq1  CTGTGCTGCCTTTGAAATAGGAGGAAGACCAACAAAGTGAATTTATATTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCCTTTGAAATAGGAGGAAGACCAACAAAGTGAATTTATATTG  900

seq1  AAATTGGATTGATTTACAGGACAGGGTGAGTACTCCAATGATGTCTTCAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGATTGATTTACAGGACAGGGTGAGTACTCCAATGATGTCTTCAC  950

seq1  AATGGAGACCCTGACATCCCAGGAGCTGAGGCTGGATGTCCCAATCTGGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGACCCTGACATCCCAGGAGCTGAGGCTGGATGTCCCAATCTGGC  1000

seq1  AATGGAGGCCTGGGGGAGGCCTGTAGGGCTGCTGGTCTTTAGTCCACACT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGCCTGGGGGAGGCCTGTAGGGCTGCTGGTCTTTAGTCCACACT  1050

seq1  AGAAGGCTGAAGAAGCAGTATTCCTTGGACAACTGACTTATAGCTGTTCA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGAAGAAGCAGTATTCCTTGGACAACTGACTTATAGCTGTTCA  1100

seq1  CACAGTAGCACCTAGAATTC  1110
      ||||||||||||||||||||
seq2  CACAGTAGCACCTAGAATTC  1120

seq1: chr2_105181858_105182998
seq2: B6Ng01-295N07.g_68_1217

seq1  GAATTCACATAGGTAAACATACGGACATACTGATATTCCTAGGGTTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAGGTAAACATACGGACATACTGATATTCCTAGGGTTCACT  50

seq1  CTCTGCTAGCTAGCAGATATATATATATTTTTTTTAGTCCCCCTATTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAGCTAGCAGATATATATATATTTTTTTTAGTCCCCCTATTTAG  100

seq1  AAAATGGTTTGGTGATACCAAAGCCTTTTTTCTTTCATTCATCATTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTTTGGTGATACCAAAGCCTTTTTTCTTTCATTCATCATTCAGG  150

seq1  GCATTTCCTTTGCATCTGGCTCTTAGCTCAGTGCTGGGATTCAATAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTTTGCATCTGGCTCTTAGCTCAGTGCTGGGATTCAATAATGT  200

seq1  AAAGTGCTTAGCTTTGTCTAATGTATGTGCATAGCACGTACACATCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTTAGCTTTGTCTAATGTATGTGCATAGCACGTACACATCTGCA  250

seq1  TGTGCATCTATGCATGAACAACTCTCTTGTCCTTAATGCTCTTGGCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCTATGCATGAACAACTCTCTTGTCCTTAATGCTCTTGGCCCTC  300

seq1  TGTTCAGCTCTTAGTGAGGAAATACTGCCTTATTGCCTCCTTGGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTCTTAGTGAGGAAATACTGCCTTATTGCCTCCTTGGACAGAC  350

seq1  TGAAGAAACCGCATATGTAAACATATTTTCCTTACCCAGCCCTGAAACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAACCGCATATGTAAACATATTTTCCTTACCCAGCCCTGAAACGA  400

seq1  AGTTGATGTCAGCTGGATTCAGGAGGCCGTGTCTTCGTTCAGCCTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATGTCAGCTGGATTCAGGAGGCCGTGTCTTCGTTCAGCCTGTTGG  450

seq1  ACCAGCAGTTGAACACAGGCGAGTGCTTCCGTTGACTGCGTTACCCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGTTGAACACAGGCGAGTGCTTCCGTTGACTGCGTTACCCAGAT  500

seq1  CTGCCTACATTTTAAAGCTTAATATGGACAGATGACTGGCCCACATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACATTTTAAAGCTTAATATGGACAGATGACTGGCCCACATCACA  550

seq1  ATCATGGGATCTGTGATGCCCTCATCCTTCCCCCCTACCCCCCCGCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGATCTGTGATGCCCTCATCCTTCCCCCCTACCCCCCCGCCAAA  600

seq1  ATTTGGTTCGATCTTCTTATTCACAGCCTCAAAGAAGCTCAAAGGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTCGATCTTCTTATTCACAGCCTCAAAGAAGCTCAAAGGATGGA  650

seq1  TGGCATGGACTGCCATTTAAGAAGAAATAATTAAATCAAACCCAGTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGACTGCCATTTAAGAAGAAATAATTAAATCAAACCCAGTGATC  700

seq1  CTTAGCTGAATCTTGTAAATGACCAGCTTTCCAGGATGGCAGTTTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGAATCTTGTAAATGACCAGCTTTCCAGGATGGCAGTTTACAGA  750

seq1  GTTTTCTGAATGGCAAAACTGAAGGTTTGGCCATTTCATTCGTTTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAATGGCAAAACTGAAGGTTTGGCCATTTCATTCGTTTGAGAG  800

seq1  CTTCACGGAAATCAGAAC-TTGGTACTTTGAAAGTGGTTTTCAAGTTTGA  849
      |||||||||||||||||| ||||||||||||||||||||||||  |||||
seq2  CTTCACGGAAATCAGAACTTTGGTACTTTGAAAGTGGTTTTCAGTTTTGA  850

seq1  CATTTGCTACAAATTAC-TTCTGAAGTTAAACTATT-CAATGT-GGCCTG  896
      ||||||||||||||||| |||||||||||||||||| |||||| ||||||
seq2  CATTTGCTACAAATTACTTTCTGAAGTTAAACTATTCCAATGTGGGCCTG  900

seq1  TCAGAAAAATCTTAGGCATCGC-GGATGT--CTTAATCCCTG-TCCTGG-  941
      |||||||||||||||||||||| ||||||   ||| |||||| |||||| 
seq2  TCAGAAAAATCTTAGGCATCGCGGGATGTTCTTTATTCCCTGTTCCTGGT  950

seq1  TAGCGCTCAAGGCACCG-AACTTTCCAGAAATCGTGAGTGAGGGCCAGGT  990
      |||||||| |||||||| |||||||||| |||||||||||| ||||||||
seq2  TAGCGCTC-AGGCACCGAAACTTTCCAG-AATCGTGAGTGA-GGCCAGGT  997

seq1  G-TTTACTACTCATGGAGAGATGTT-GGAACTTGTAGCTTTCTGGTTCAC  1038
      | ||||||||||||||||||||||| |||||||||||| |||  | ||  
seq2  GTTTTACTACTCATGGAGAGATGTTGGGAACTTGTAGCCTTCCTGCTCCA  1047

seq1  CGGCAACTC-TCTCCAAATCAC--GAGCTTTGGGATGACACTAAAGAAGA  1085
      ||||||||| ||||||| ||||   |||||  |||||||||| |   |||
seq2  CGGCAACTCTTCTCCAATTCACCGAAGCTT--GGATGACACTTA--GAGA  1093

seq1  TTGGCAGTTTAATAAGAAATTGCATCG-ATTCCCCAGATCAAATCAACTG  1134
      ||| ||| ||||||||||||||||||| |||||| | ||  | |||||||
seq2  TTGCCAGGTTAATAAGAAATTGCATCGAATTCCCGAAATTCATTCAACTG  1143

seq1  CTTCTGT  1141
      |||||||
seq2  CTTCTGT  1150