BAC Information

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BAC

Clone NameB6Ng01-296G09
Chromosome2 (Build37)
Map Location 42,962,667 - 43,052,751
singlet/doubletdoublet
Overlap geneLOC100041228
Upstream geneLrp1b
Downstream geneLOC100041245, Kynu, Arhgap15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296G09.bB6Ng01-296G09.g
ACCGA092020GA092021
length1,0491,137
definitionB6Ng01-296G09.b B6Ng01-296G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,051,697 - 43,052,751)(42,962,667 - 42,963,833)
sequence
gaattctgtgatttgggtttgagcatgccttctggaaggcttacagtgct
gtctaggttaggggggccttttgtgtccctgcttaccacagacctcctgg
gagatagtcaggctaaggggtgtgggagacaagcaggagcgccctatctg
ccttgggcagaattgcagaatttgatttcctttatccatgatttcaattg
tttgaaggaattgtttgtttgtttgtttgtttatttatttattcacctta
aatcctgacttcagtggtccctcttctcagttccactcccacagactcta
cctttcccttctaccccccccctcctcctctgccatatcaactcactgca
gtactaagcacatcttttcccactgagattagacaagccagtacagttag
ggtaatgagatcaccaggtaggcaacagaataagggacagaccgtctcca
gcttatggggaatctcttgaaaaccaagctagacatctgttacatatgtg
agggggcctatctccagtgcatgattgctcttttttggtggttcagcctc
ctagaactcccaagggcccagaataattgactctatcttgtggagttcat
ttcccctgcaggttcctcaatccttcccacaatactttgacaagattctt
catgctctatctaatgttcttttttttttttttttttttttttttttttt
tttttttggggggtggaagcccccaatttatttacatggaaaaagccaat
gccgtctgctccaggtgtcagacacacaacttggcccactgtgcccttcg
catgagacttttcttgtcatcaggctggaattccccaaggagaagggagg
aagggtgtttggttggacccaggatgggtcttactcacaaacctaggctc
cacgtaacccacaggtggagtttttcaacctattatgcttattaaccaaa
gaacacatgttgccatgctaaagtgataatttctattaggccagccacct
tccaaatcttacatgtggacctcagattccctccagtcttccaatcatt

gaattcaaacttcacctccctaaaggattacttcagagattggcactatg
ggagagtgatggaaatgtagggagtagagccgttaaaaagcttttggaca
ttcagtttgaccatggccctagtgagaccaggagagctatcccagtccca
gatctagggctttgtgttgcctctccactatgaactatttaagaatgtga
aggggtgggtattatagactaaaactacaggatcttgacaacacagggca
acaacagaatatctgagagaagacctgataaggaaacagtattgatagta
tagcagaagccagaggcctcaaaccacaccaatgacacattgcaatgaac
atttgcaagtaaacctgtttggaacaatagggtatactgtgtgacacacc
atgacacactacagcttcaacagcaatttttttccttctcttttttattg
tttttatttttattttattttccttttgtttttcttttggggctgttgca
agggtaaagggcagatataaatggtcatggagaagagtggtattttgggt
actagatatgaaattcatattttattcataaagaatgaataaaatagtta
cctgaaaaaaaatggacagtgggaatccagctgctcctcttcctttgtca
ccacattccaggattgtttacaggatcctgaccaacatgtactgccttgc
tacagtatctaccaaccagggactaagatgtccagacttcttgttcaaaa
tgaatgcttcatccgtatgaatttattatctcaggtattttattatagta
acaaagtgttggccaacataccaggcttttatttcttgttccctgtcact
gaatttgcacatgtggtctaattcctctttctatcacaccttaagtgtca
aaatataaaatttaatacttagtatttaaagaataacacaaggaatacaa
tttccttcttatatctttgctaaaccattacatttttctggtcaagtttg
tgtcttttctatgcagtcactctgctgcaaacatatacatctgctatgtg
agctttaaatcacatgaagcactgttccagtaggactgcatatctcttta
ttgtcttgaaactgatacttgaggaatcccaactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43051697_43052751
seq2: B6Ng01-296G09.b_48_1096 (reverse)

seq1  AATGAGGGAAGGACTGGGAAGGGGAATCTGAGGT-CACATGGTAAGATTT  49
      |||||  | | ||||||    ||||||||||||| ||||| |||||||||
seq2  AATGATTGGAAGACTGG---AGGGAATCTGAGGTCCACAT-GTAAGATTT  46

seq1  GGGAAGGGTGGGCTGGGCTAAATATGAAATTATTCACTTTTAAGCATTGG  99
       ||||||   |||||| || |||| ||||||| |||||||  |||| |||
seq2  -GGAAGG--TGGCTGGCCT-AATA-GAAATTA-TCACTTT--AGCA-TGG  87

seq1  CAACATGTGTTCTTTTTGTTTAATAAAGCATTATTAGGTTGAAAAACT-C  148
      ||||||||||||  |||| ||||| ||||| || |||||||||||||| |
seq2  CAACATGTGTTC--TTTGGTTAAT-AAGCA-TAATAGGTTGAAAAACTCC  133

seq1  ACCTGTGGGTTACGTGGAGCCTAGGTGTTTTGGGTAAGACCCATCCT-GG  197
      |||||||||||||||||||||||||| || || |||||||||||||| ||
seq2  ACCTGTGGGTTACGTGGAGCCTAGGT-TTGTGAGTAAGACCCATCCTGGG  182

seq1  TCCA--CCAACACCC-TCCTCCC-TCTCCCTGGTG-ATTCCAGCCTGATG  242
      ||||  | ||||||| ||||||| ||||| ||| | ||||||||||||||
seq2  TCCAACCAAACACCCTTCCTCCCTTCTCCTTGGGGAATTCCAGCCTGATG  232

seq1  ACAAGAAA--GCTCATGCGAA-GGCACAGTGGGCCAAGTTGTGTGTCTGA  289
      ||||||||   |||||||||| ||||||||||||||||||||||||||||
seq2  ACAAGAAAAGTCTCATGCGAAGGGCACAGTGGGCCAAGTTGTGTGTCTGA  282

seq1  CACCTGGAGCAGACGGCATTGGCTTTCTCCATGTTAATAAATT-GGTGCT  338
      |||||||||||||||||||||||||| ||||||| |||||||| || |||
seq2  CACCTGGAGCAGACGGCATTGGCTTTTTCCATGTAAATAAATTGGGGGCT  332

seq1  TACAACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  388
      | || | |  |||||||||||||||||||||||||||||||||||||| |
seq2  TCCACCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA  382

seq1  ACATTAGATAGAGCATGAAGAATCTTGTCAAAGTATTGTGGGAAGGATTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGATAGAGCATGAAGAATCTTGTCAAAGTATTGTGGGAAGGATTG  432

seq1  AGGAACCTGCAGGGGAAATGAACTCCACAAGATAGAGTCAATTATTCTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGCAGGGGAAATGAACTCCACAAGATAGAGTCAATTATTCTGG  482

seq1  GCCCTTGGGAGTTCTAGGAGGCTGAACCACCAAAAAAGAGCAATCATGCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGGAGTTCTAGGAGGCTGAACCACCAAAAAAGAGCAATCATGCA  532

seq1  CTGGAGATAGGCCCCCTCACATATGTAACAGATGTCTAGCTTGGTTTTCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATAGGCCCCCTCACATATGTAACAGATGTCTAGCTTGGTTTTCA  582

seq1  AGAGATTCCCCATAAGCTGGAGACGGTCTGTCCCTTATTCTGTTGCCTAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCCCCATAAGCTGGAGACGGTCTGTCCCTTATTCTGTTGCCTAC  632

seq1  CTGGTGATCTCATTACCCTAACTGTACTGGCTTGTCTAATCTCAGTGGGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATCTCATTACCCTAACTGTACTGGCTTGTCTAATCTCAGTGGGA  682

seq1  AAAGATGTGCTTAGTACTGCAGTGAGTTGATATGGCAGAGGAGGAGGGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTGCTTAGTACTGCAGTGAGTTGATATGGCAGAGGAGGAGGGGG  732

seq1  GGGGTAGAAGGGAAAGGTAGAGTCTGTGGGAGTGGAACTGAGAAGAGGGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGAAGGGAAAGGTAGAGTCTGTGGGAGTGGAACTGAGAAGAGGGA  782

seq1  CCACTGAAGTCAGGATTTAAGGTGAATAAATAAATAAACAAACAAACAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAGTCAGGATTTAAGGTGAATAAATAAATAAACAAACAAACAAA  832

seq1  CAAACAATTCCTTCAAACAATTGAAATCATGGATAAAGGAAATCAAATTC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTCCTTCAAACAATTGAAATCATGGATAAAGGAAATCAAATTC  882

seq1  TGCAATTCTGCCCAAGGCAGATAGGGCGCTCCTGCTTGTCTCCCACACCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCTGCCCAAGGCAGATAGGGCGCTCCTGCTTGTCTCCCACACCC  932

seq1  CTTAGCCTGACTATCTCCCAGGAGGTCTGTGGTAAGCAGGGACACAAAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTGACTATCTCCCAGGAGGTCTGTGGTAAGCAGGGACACAAAAG  982

seq1  GCCCCCCTAACCTAGACAGCACTGTAAGCCTTCCAGAAGGCATGCTCAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCTAACCTAGACAGCACTGTAAGCCTTCCAGAAGGCATGCTCAAA  1032

seq1  CCCAAATCACAGAATTC  1055
      |||||||||||||||||
seq2  CCCAAATCACAGAATTC  1049


seq1: chr2_42962667_42963833
seq2: B6Ng01-296G09.g_64_1200

seq1  GAATTCAAACTTCACCTCCCTAAAGGATTACTTCAGAGATTGGCACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTCACCTCCCTAAAGGATTACTTCAGAGATTGGCACTATG  50

seq1  GGAGAGTGATGGAAATGTAGGGAGTAGAGCCGTTAAAAAGCTTTTGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGATGGAAATGTAGGGAGTAGAGCCGTTAAAAAGCTTTTGGACA  100

seq1  TTCAGTTTGACCATGGCCCTAGTGAGACCAGGAGAGCTATCCCAGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGACCATGGCCCTAGTGAGACCAGGAGAGCTATCCCAGTCCCA  150

seq1  GATCTAGGGCTTTGTGTTGCCTCTCCACTATGAACTATTTAAGAATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGGCTTTGTGTTGCCTCTCCACTATGAACTATTTAAGAATGTGA  200

seq1  AGGGGTGGGTATTATAGACTAAAACTACAGGATCTTGACAACACAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGGTATTATAGACTAAAACTACAGGATCTTGACAACACAGGGCA  250

seq1  ACAACAGAATATCTGAGAGAAGACCTGATAAGGAAACAGTATTGATAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAATATCTGAGAGAAGACCTGATAAGGAAACAGTATTGATAGTA  300

seq1  TAGCAGAAGCCAGAGGCCTCAAACCACACCAATGACACATTGCAATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGCCAGAGGCCTCAAACCACACCAATGACACATTGCAATGAAC  350

seq1  ATTTGCAAGTAAACCTGTTTGGAACAATAGGGTATACTGTGTGACACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAAGTAAACCTGTTTGGAACAATAGGGTATACTGTGTGACACACC  400

seq1  ATGACACACTACAGCTTCAACAGCAATTTTTTTCCTTCTCTTTTTTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACTACAGCTTCAACAGCAATTTTTTTCCTTCTCTTTTTTATTG  450

seq1  TTTTTATTTTTATTTTATTTTCCTTTTGTTTTTCTTTTGGGGCTGTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTATTTTATTTTCCTTTTGTTTTTCTTTTGGGGCTGTTGCA  500

seq1  AGGGTAAAGGGCAGATATAAATGGTCATGGAGAAGAGTGGTATTTTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAGGGCAGATATAAATGGTCATGGAGAAGAGTGGTATTTTGGGT  550

seq1  ACTAGATATGAAATTCATATTTTATTCATAAAGAATGAATAAAATAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATATGAAATTCATATTTTATTCATAAAGAATGAATAAAATAGTTA  600

seq1  CCTGAAAAAAAATGGACAGTGGGAATCCAGCTGCTCCTCTTCCTTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAAAAATGGACAGTGGGAATCCAGCTGCTCCTCTTCCTTTGTCA  650

seq1  CCACATTCCAGGATTGTTTACAGGATCCTGACCAACATGTACTGCCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCCAGGATTGTTTACAGGATCCTGACCAACATGTACTGCCTTGC  700

seq1  TACAGTATCTACCAACCAGGGACTAAGATGTCCAGACTTCTTGTTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATCTACCAACCAGGGACTAAGATGTCCAGACTTCTTGTTCAAAA  750

seq1  TGAATGCTTCATCCGTATGAATTTATTATCTCAGGTATTTTATTATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTTCATCCGTATGAATTTATTATCTCAGGTATTTTATTATAGTA  800

seq1  ACAAAGTGTTGGCCAACATACCAGGCTTTTATTTCTTGTTCCCTGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTTGGCCAACATACCAGGCTTTTATTTCTTGTTCCCTGTCACT  850

seq1  GAATTTGCACATGTGGTCTAATTCCTCTTTCTATCACACCTTAAGTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCACATGTGGTCTAATTCCTCTTTCTATCACACCTTAAGTGTCA  900

seq1  AAATATAAAATTTAATACTTAGTATTTAAAGAATAACACAAGGAATACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAATTTAATACTTAGTATTTAAAGAATAACACAAGGAATACAA  950

seq1  -TTCCTTCTTATATCTTTGCTAAAACCATTACATTTTTCTGGTCAAGTTT  999
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCCTTCTTATATCTTTGCT-AAACCATTACATTTTTCTGGTCAAGTTT  999

seq1  GTGTCTTTTCTATTGCAGGTTCACTCTTGCCTGGAAACATATACATCTGC  1049
      |||||||||||| |||||  |||||||   ||| ||||||||||||||||
seq2  GTGTCTTTTCTA-TGCAG--TCACTCT--GCTGCAAACATATACATCTGC  1044

seq1  TATTGTGAGCTTTAAAATTCACATGGAAAGCCAACCTGTTTCAAATTAAG  1099
      || |||||||||||||  |||||||  ||||    ||||| |  | || |
seq2  TA-TGTGAGCTTTAAA--TCACATG--AAGC---ACTGTTCC--AGTAGG  1084

seq1  ACTGGCAATATCTTCTTTTATTGTCCTGGAAACTTTTGATAACCTTGTAA  1149
      ||||   ||||||   |||||||| || |||||   |||||  ||||  |
seq2  ACTG--CATATCT--CTTTATTGT-CTTGAAAC---TGATA--CTTG--A  1122

seq1  GGAATTTCCCCAACTCTA  1167
      |||||   ||||||||||
seq2  GGAAT---CCCAACTCTA  1137


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