BAC Information

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BAC

Clone NameB6Ng01-296I04
Chromosome2 (Build37)
Map Location 122,090,536 - 122,091,705
singlet/doubletsinglet
Overlap geneSord
Upstream geneTrp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832
Downstream geneDuox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296I04.bB6Ng01-296I04.g
ACCGA092106GA092107
length1,1481,163
definitionB6Ng01-296I04.b B6Ng01-296I04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtccttacatttgcaaagtggaggcccaccttcccaacactgc
tcattcatgagcaggagcagtattggttgctaggcaaccagatttttttt
ttcccaaccaaagatcttaaatcctgcctagagggccacaggagggcttg
ccccactcagaggattagactcctctcccagagtcactcacaggcaatta
tttcccattccactcagttctggctaccagaagatgctcccctctcagct
gggtgaggctgctgatatctgtcggatgggtatcacagcgtaatttcatc
atagggcttttctttataagatttgggtccaaatcacaccctttgtgatc
ttaagataatcaagaaatgcacagtaactgatgtaacttgggctgcagtc
tgtaatccacctcttcagctataagtaggggacatgttaaaaaaaaaaaa
aaaaaaaaaaagactctgctggagaagatcatggcccagacctgagcttt
ctcaaactgcttcgcataataaactgttgatggtgtccgactccgtatgt
ggtttgtgcctgtttaaggagtagacttaaatggccacaaggaagaataa
caaagctttaagcaggggacatattttccatactaaacgtaatcttacaa
actgctagaaacaaacatggcagagcatcttacaggtggagggagtaatt
caggcaaagcacggtgcttttcttccctgcaagaggcaggctcaggaggt
tttggtacacatccctgcctacttgctcctcctcctcagccctaactcag
ttacaccagacttagcactggctttctctcaagactgtttccagcatgga
gatgctcaaagttcctctagtacagtggttctcaacctttgggtcataac
ctctttgaggttaaccccattgtataccctgcataccagatatttacatt
attacaacagaaaaatgacagctatgaggtagcaacaactattattgggg
ctcaccacgtcatggggactgtactaacatcgttgcatagaaggtggaga
gcgctccctagcagatgagaagcccctcgctgaggactctcagagaatgc
ctcaggcaggaaagacttctctggtcacttacatagcattgtttcctg
gaattctcacctgagggatactgaatggcagagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtaataccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtgccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagctagaacctggaaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacacattcacaaagga
actcacacaatatgtactcactgataagtggatattagcccagaaactta
ggatacccaagatataagatacaatttgctaaacgcatgaaactgaagaa
gaacgaagaccaaagtgtggacactttgccccttcttagaattgggaaca
gaacacccatggaaggagttacagagacaatgtttggagctgtgatgaaa
ggatggaccatttagagactgccatgtcccgggactcatcccataatcag
cttccaaacgctgacaccattgcacacactagcaagattttgctgaaagg
acccagatagagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctattggatggatcacaggacccccaat
tggaggatctaaagaagtacccaagagctaaagggatctgcacccctata
gtggacacatatgactaaccagtaccccgagctctgactctagctgctat
gtatcaaagatgctagtcggcattcactgaagaagagtccaatgacagca
aacttttatgccagttagatgcagtcaaaagtggcatgagtgttagggga
taactgtgtgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122090536_122091705
seq2: B6Ng01-296I04.b_49_1196

seq1  GAATTCTGTCCTTACATTTGCAAAGTGGAGGCCCACCTTCCCAACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTTACATTTGCAAAGTGGAGGCCCACCTTCCCAACACTGC  50

seq1  TCATTCATGAGCAGGAGCAGTATTGGTTGCTAGGCAACCAGATTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATGAGCAGGAGCAGTATTGGTTGCTAGGCAACCAGATTTTTTTT  100

seq1  TTCCCAACCAAAGATCTTAAATCCTGCCTAGAGGGCCACAGGAGGGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACCAAAGATCTTAAATCCTGCCTAGAGGGCCACAGGAGGGCTTG  150

seq1  CCCCACTCAGAGGATTAGACTCCTCTCCCAGAGTCACTCACAGGCAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCAGAGGATTAGACTCCTCTCCCAGAGTCACTCACAGGCAATTA  200

seq1  TTTCCCATTCCACTCAGTTCTGGCTACCAGAAGATGCTCCCCTCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATTCCACTCAGTTCTGGCTACCAGAAGATGCTCCCCTCTCAGCT  250

seq1  GGGTGAGGCTGCTGATATCTGTCGGATGGGTATCACAGCGTAATTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGCTGCTGATATCTGTCGGATGGGTATCACAGCGTAATTTCATC  300

seq1  ATAGGGCTTTTCTTTATAAGATTTGGGTCCAAATCACACCCTTTGTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCTTTTCTTTATAAGATTTGGGTCCAAATCACACCCTTTGTGATC  350

seq1  TTAAGATAATCAAGAAATGCACAGTAACTGATGTAACTTGGGCTGCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAATCAAGAAATGCACAGTAACTGATGTAACTTGGGCTGCAGTC  400

seq1  TGTAATCCACCTCTTCAGCTATAAGTAGGGGACATGTTAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCACCTCTTCAGCTATAAGTAGGGGACATGTTAAAAAAAAAAAA  450

seq1  AAAAAAAAAAAGACTCTGCTGGAGAAGATCATGGCCCAGACCTGAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGACTCTGCTGGAGAAGATCATGGCCCAGACCTGAGCTTT  500

seq1  CTCAAACTGCTTCGCATAATAAACTGTTGATGGTGTCCGACTCCGTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTGCTTCGCATAATAAACTGTTGATGGTGTCCGACTCCGTATGT  550

seq1  GGTTTGTGCCTGTTTAAGGAGTAGACTTAAATGGCCACAAGGAAGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGCCTGTTTAAGGAGTAGACTTAAATGGCCACAAGGAAGAATAA  600

seq1  CAAAGCTTTAAGCAGGGGACATATTTTCCATACTAAACGTAATCTTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTAAGCAGGGGACATATTTTCCATACTAAACGTAATCTTACAA  650

seq1  ACTGCTAGAAACAAACATGGCAGAGCATCTTACAGGTGGAGGGAGTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGAAACAAACATGGCAGAGCATCTTACAGGTGGAGGGAGTAATT  700

seq1  CAGGCAAAGCACGGTGCTTTTCTTCCCTGCAAGAGGCAGGCTCAGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAGCACGGTGCTTTTCTTCCCTGCAAGAGGCAGGCTCAGGAGGT  750

seq1  TTTGGTACACATCCCTGCCTACTTGCTCCTCCTCCTCAGCCCTAACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACACATCCCTGCCTACTTGCTCCTCCTCCTCAGCCCTAACTCAG  800

seq1  TTACACCAGACTTAGCACTGGCTTTCTCTCAAGACTGTTTCCAGCATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAGACTTAGCACTGGCTTTCTCTCAAGACTGTTTCCAGCATGGA  850

seq1  GATGCTCAAAGTTCCTCTAGTACAGTGGTTCTCAACCTTTGGGTCATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAAAGTTCCTCTAGTACAGTGGTTCTCAACCTTTGGGTCATAAC  900

seq1  CTCTTTGAGGTTAACCCCATTGTATACCCTGCATACCAGATATTTACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAGGTTAACCCCATTGTATACCCTGCATACCAGATATTTACATT  950

seq1  ATTACAACAGAAAAATGACAGCTATGAGGTAGCAACAAAACTTATTATTG  1000
      ||||||||||||||||||||||||||||||||||||||    ||||||||
seq2  ATTACAACAGAAAAATGACAGCTATGAGGTAGCAACAA---CTATTATTG  997

seq1  GGGCTCACCACGTCATGGGGAACTGTACTAAAGGATCGTGGCATAAGGAA  1050
      |||||||||||||||||||| ||||||||||   ||||| |||||  |||
seq2  GGGCTCACCACGTCATGGGG-ACTGTACTAA--CATCGTTGCATA--GAA  1042

seq1  GGGTGAGAAGCGCTCCCCTAGCAGGAATGAGAAAGCCCCTCGCCTTGGAA  1100
      ||  ||| |||||| |||||||||  ||||| |||||||||||    || 
seq2  GGTGGAG-AGCGCT-CCCTAGCAG--ATGAG-AAGCCCCTCGC---TGAG  1084

seq1  GACTTCTCAGAG-ATGCCTCAGGCAGGAGAAGACTTCTCTGTTAAACTTC  1149
      ||| |||||||| ||||||||||||||| |||||||||||| |  |||| 
seq2  GAC-TCTCAGAGAATGCCTCAGGCAGGA-AAGACTTCTCTGGT-CACTTA  1131

seq1  CAAATAAGCATGTGTTTCCTG  1170
      ||    ||||| |||||||||
seq2  CA---TAGCAT-TGTTTCCTG  1148