BAC Information

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BAC

Clone NameB6Ng01-297D07
Chromosome2 (Build37)
Map Location 7,258,913 - 7,402,282
singlet/doubletdoublet
Overlap geneLOC100040648
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297D07.bB6Ng01-297D07.g
ACCGA092619GA092620
length1,0911,103
definitionB6Ng01-297D07.b B6Ng01-297D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,258,913 - 7,260,031)(7,401,166 - 7,402,282)
sequence
gaattcctcctatatcccacctgggcatccaaactgactggctgactggc
ttttataagactttgcactctctggagaatggagagtacttgtaaattac
taggtaagccacagtttggagaaactggcaccttctatagcctatacaaa
gtcagggatgcagacattggggcaaagagtctttgtcattgttgagactc
agaaaatgacactacaaaggaagacactggcatgccaaatactttgaatt
aaagcacactggaaggtgtcagaaatggcccaagaaccaaggctttctga
tttcctctgccctcttttttccagcctttattctcctctgaagtgagtta
cagaaagcgaaatgacccttttcccaaggtaagtcatagaaagcaaaaca
cattttacccaaaagcaagatataaggcctaaaaatactactgtttctgt
gttggcactggccttatagaactcctgtgacctcctttgtctgggagtag
atcagaaagccttgatcccagaaagggttccataggatacttagcaggaa
ggaatatacacagacaggccaaaaataaactgagcagacaggccttggtg
agctgctctgctttaagtctgtggctatcctcatataccattttgggctt
attggattttcccatggttgccccttgtgtttcatcaaatctacacatgt
ctactttcctctggatctgtgtcttccttctgaaaacttctgaatcactt
aacacctcaataaaataaagttgtgataatttatgtccttaatcagtctt
ttgttagaggagggtcagccatgatggcccttatgagaaaagacatcaca
cccttttgctacccttttatcctgatgctggaatatcttagcagtttcat
tgagacagagatcattcctgcattcaatgtgatcaaatatgaaagttgct
agaaggttctagaggtcttcaaagcacatatcatggataccttccttatc
ttcagattattgagaaaacgacaactacaaacaacaaacaacaacaacaa
ccacgctacttctgtttatgacagcactgatgtagtgagac

gaattcctggtgatttcaatctgtaaatgcctctgtaacctctgtctgtc
ctgatggtctcaaggctgccgcgtgtgactgccatgtacccatccgaagc
cacgctgacatgctgacattggtccacactcttttcccatctcctttttt
tttcttttttatttattattagatattttctttatttacatttcaaatgc
tatcctgaaagttccctgtaccccgccccctgtcgctgccctgctcccct
acccacccactcctacttcttggccctggcgttcccctgtactggggccg
actaggccatcttctgatacatatgcagctagagacaagagctccggggt
actggttagttcatattgttgttccacctatagggttgcaaactccttca
gctccttgggtactttctctagctcccccctttttttccttttttttttt
ttttttttttttttttgcccagtgcatttccttagtcctcagctgtcctt
cgatcaccagcttcctatctgcatgagcaggtacccagcagcccacagtt
acggtacctcagcttccttctcagcttccttgccatttatccctccactt
ccccaggcccgggaattgttctaagcattggtttcttctcacatcttcct
gatcacctctctgagtcagaactcatgcctttgactgctcttatcaaaac
ggccaatgccttcaacactgaaaaactcaaccatttatttctggaagaaa
tacatacaagaaatacatacaacttttaaatgaactgctacacaattatg
caacttttttctgatgtgatgttttccatgttcacatctatagttccggg
cctgtgatctttattccactttgtccttgtagactgggaggattgttgga
tgcgggattttctctttggtggtaattttggttctctctttctttctcct
tccccagtagataccatctttctgtggatcttagtcaggtctactttcct
cagtgatattttggttggtcctgggtttatttgcaatccttctctgtact
catgaagtggagacttaacacatcatgctatctacctctctctccatctt
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7258913_7260031
seq2: B6Ng01-297D07.b_48_1138

seq1  GAATTCCTCCTATATCCCACCTGGGCATCCAAACTGACTGGCTGACTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTATATCCCACCTGGGCATCCAAACTGACTGGCTGACTGGC  50

seq1  TTTTATAAGACTTTGCACTCTCTGGAGAATGGAGAGTACTTGTAAATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGACTTTGCACTCTCTGGAGAATGGAGAGTACTTGTAAATTAC  100

seq1  TAGGTAAGCCACAGTTTGGAGAAACTGGCACCTTCTATAGCCTATACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGCCACAGTTTGGAGAAACTGGCACCTTCTATAGCCTATACAAA  150

seq1  GTCAGGGATGCAGACATTGGGGCAAAGAGTCTTTGTCATTGTTGAGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGATGCAGACATTGGGGCAAAGAGTCTTTGTCATTGTTGAGACTC  200

seq1  AGAAAATGACACTACAAAGGAAGACACTGGCATGCCAAATACTTTGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGACACTACAAAGGAAGACACTGGCATGCCAAATACTTTGAATT  250

seq1  AAAGCACACTGGAAGGTGTCAGAAATGGCCCAAGAACCAAGGCTTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACACTGGAAGGTGTCAGAAATGGCCCAAGAACCAAGGCTTTCTGA  300

seq1  TTTCCTCTGCCCTCTTTTTTCCAGCCTTTATTCTCCTCTGAAGTGAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGCCCTCTTTTTTCCAGCCTTTATTCTCCTCTGAAGTGAGTTA  350

seq1  CAGAAAGCGAAATGACCCTTTTCCCAAGGTAAGTCATAGAAAGCAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCGAAATGACCCTTTTCCCAAGGTAAGTCATAGAAAGCAAAACA  400

seq1  CATTTTACCCAAAAGCAAGATATAAGGCCTAAAAATACTACTGTTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACCCAAAAGCAAGATATAAGGCCTAAAAATACTACTGTTTCTGT  450

seq1  GTTGGCACTGGCCTTATAGAACTCCTGTGACCTCCTTTGTCTGGGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCACTGGCCTTATAGAACTCCTGTGACCTCCTTTGTCTGGGAGTAG  500

seq1  ATCAGAAAGCCTTGATCCCAGAAAGGGTTCCATAGGATACTTAGCAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGCCTTGATCCCAGAAAGGGTTCCATAGGATACTTAGCAGGAA  550

seq1  GGAATATACACAGACAGGCCAAAAATAAACTGAGCAGACAGGCCTTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATACACAGACAGGCCAAAAATAAACTGAGCAGACAGGCCTTGGTG  600

seq1  AGCTGCTCTGCTTTAAGTCTGTGGCTATCCTCATATACCATTTTGGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCTGCTTTAAGTCTGTGGCTATCCTCATATACCATTTTGGGCTT  650

seq1  ATTGGATTTTCCCATGGTTGCCCCTTGTGTTTCATCAAATCTACACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTTTCCCATGGTTGCCCCTTGTGTTTCATCAAATCTACACATGT  700

seq1  CTACTTTCCTCTGGATCTGTGTCTTCCTTCTGAAAACTTCTGAATCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCTCTGGATCTGTGTCTTCCTTCTGAAAACTTCTGAATCACTT  750

seq1  AACACCTCAATAAAATAAAGTTGTGATAATTTATGTCCTTAATCAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCAATAAAATAAAGTTGTGATAATTTATGTCCTTAATCAGTCTT  800

seq1  TTGTTAGAGGAGGGTCAGCCATGATGGCCCTTATGAGAAAAGACATCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAGGAGGGTCAGCCATGATGGCCCTTATGAGAAAAGACATCACA  850

seq1  CCCTTTTGCTACCCTTTTATCCTGATGCTGGAATATCTTAGCAGTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGCTACCCTTTTATCCTGATGCTGGAATATCTTAGCAGTTTCAT  900

seq1  TGAGACAGAGATCATTCCTGCATTCAATGTGATCAAATATGAAAGTTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGAGATCATTCCTGCATTCAATGTGATCAAATATGAAAGTTGCT  950

seq1  AGAAGGTTCTAGAGGTCTTCAAAGCACATATCATGGATACCTTCCTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTCTAGAGGTCTTCAAAGCACATATCATGGATACCTTCCTTATC  1000

seq1  TTCAAGATTATTGAAGAAAAAACAGAACAAAACATAACAAAACAAAACAA  1050
      ||| ||||||||||  |||  ||                      ||| |
seq2  TTC-AGATTATTGAGAAAACGAC----------------------AACTA  1027

seq1  AACAAAACAAAACAAAACAAAACACAACAGCTACTTCTGTTTTATGAACA  1100
       | | ||||||  | ||||| | || || |||||||||| |||||||   
seq2  CAAACAACAAACAACAACAACA-ACCAC-GCTACTTCTG-TTTATGA--C  1072

seq1  AGCACTGATGTAGTGAGAC  1119
      |||||||||||||||||||
seq2  AGCACTGATGTAGTGAGAC  1091


seq1: chr2_7401166_7402282
seq2: B6Ng01-297D07.g_68_1170 (reverse)

seq1  TTAAAGATGGAGAGAGAAGTGTAGATTAGCAATGATTGTTGTTAAGTCTC  50
      |||||||||||||||||   ||||| |||| |||||   |||||||||||
seq2  TTAAAGATGGAGAGAGA--GGTAGA-TAGC-ATGAT--GTGTTAAGTCTC  44

seq1  AAACTCATGAGTACAGAGAAGGAATTGCAAAATAAACCCAAGGGAACAAA  100
       |  |||||||||||||||||| ||||| |||||||||||   | || ||
seq2  CACTTCATGAGTACAGAGAAGG-ATTGC-AAATAAACCCA---GGACCAA  89

seq1  CAAAAATATCACTGAGAAAAGTAGAAACTGACTAAAGAT-CACAGAAAGA  149
      | |||||||||||||| ||||||| | |||||| ||||| ||||||||||
seq2  CCAAAATATCACTGAGGAAAGTAG-ACCTGACT-AAGATCCACAGAAAGA  137

seq1  TGGTATCTACTGGGGGAAAGGAGAAAGAAAAGAGAGAAAACAAAATAACA  199
      |||||||||||||||  |||||||||| |||||||| || |||||| || 
seq2  TGGTATCTACTGGGG--AAGGAGAAAG-AAAGAGAG-AACCAAAATTACC  183

seq1  ACAAAAGAGAAAAATCCGCAT-CAACAATCCT-CCAGTCTACAAGGACAA  247
      || ||||||||||  |||||| |||||||||| |||||||||||||||||
seq2  ACCAAAGAGAAAATCCCGCATCCAACAATCCTCCCAGTCTACAAGGACAA  233

seq1  AGTGGAATAAAGATCACAGGCCCGGAACTATAGATGTGAACATGGAAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATAAAGATCACAGGCCCGGAACTATAGATGTGAACATGGAAAAC  283

seq1  ATTACATCAGAAAAAAGTTGCATAATTGTGTAGCAGTTCATTTAAAAGTT  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCAGAAAAAAGTTGCATAATTGTGTAGCAGTTCATTTAAAAGTT  333

seq1  GTATGTATTTCTTGTATGTATTTCTTCCAGAAATAAATGGTTGAGTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTTCTTGTATGTATTTCTTCCAGAAATAAATGGTTGAGTTTTT  383

seq1  CAGTGTTGAAGGCATTGGCCGTTTTGATAAGAGCAGTCAAAGGCATGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGAAGGCATTGGCCGTTTTGATAAGAGCAGTCAAAGGCATGAGT  433

seq1  TCTGACTCAGAGAGGTGATCAGGAAGATGTGAGAAGAAACCAATGCTTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCAGAGAGGTGATCAGGAAGATGTGAGAAGAAACCAATGCTTAG  483

seq1  AACAATTCCCGGGCCTGGGGAAGTGGAGGGATAAATGGCAAGGAAGCTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCCCGGGCCTGGGGAAGTGGAGGGATAAATGGCAAGGAAGCTGA  533

seq1  GAAGGAAGCTGAGGTACCGTAACTGTGGGCTGCTGGGTACCTGCTCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCTGAGGTACCGTAACTGTGGGCTGCTGGGTACCTGCTCATGC  583

seq1  AGATAGGAAGCTGGTGATCGAAGGACAGCTGAGGACTAAGGAAATGCACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAAGCTGGTGATCGAAGGACAGCTGAGGACTAAGGAAATGCACT  633

seq1  GGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAGGGGGGAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAAAGGGGGGAGCT  683

seq1  AGAGAAAGTACCCAAGGAGCTGAAGGAGTTTGCAACCCTATAGGTGGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTACCCAAGGAGCTGAAGGAGTTTGCAACCCTATAGGTGGAAC  733

seq1  AACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGAACTAACCAGTACCCCGGAGCTCTTGTCTCTAGCTGCATAT  783

seq1  GTATCAGAAGATGGCCTAGTCGGCCCCAGTACAGGGGAACGCCAGGGCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAGATGGCCTAGTCGGCCCCAGTACAGGGGAACGCCAGGGCCA  833

seq1  AGAAGTAGGAGTGGGTGGGTAGGGGAGCAGGGCAGCGACAGGGGGCGGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGGAGTGGGTGGGTAGGGGAGCAGGGCAGCGACAGGGGGCGGGG  883

seq1  TACAGGGAACTTTCAGGATAGCATTTGAAATGTAAATAAAGAAAATATCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAACTTTCAGGATAGCATTTGAAATGTAAATAAAGAAAATATCT  933

seq1  AATAATAAATAAAAAAGAAAAAAAAAGGAGATGGGAAAAGAGTGTGGACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATAAAAAAGAAAAAAAAAGGAGATGGGAAAAGAGTGTGGACC  983

seq1  AATGTCAGCATGTCAGCGTGGCTTCGGATGGGTACATGGCAGTCACACGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGCATGTCAGCGTGGCTTCGGATGGGTACATGGCAGTCACACGC  1033

seq1  GGCAGCCTTGAGACCATCAGGACAGACAGAGGTTACAGAGGCATTTACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTTGAGACCATCAGGACAGACAGAGGTTACAGAGGCATTTACAG  1083

seq1  ATTGAAATCACCAGGAATTC  1117
      ||||||||||||||||||||
seq2  ATTGAAATCACCAGGAATTC  1103


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