BAC Information

Click to search

BAC

Clone NameB6Ng01-297O03
Chromosome2 (Build37)
Map Location 58,021,578 - 58,150,175
singlet/doubletdoublet
Overlap geneLOC100042926, Acvr1c
Upstream geneLOC100041900, LOC100042910, Gpd2, LOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp
Downstream geneLOC667062, Acvr1, LOC674940, Upp2, BC062650, Pkp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297O03.bB6Ng01-297O03.g
ACCGA093134GA093135
length8871,157
definitionB6Ng01-297O03.b B6Ng01-297O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,021,578 - 58,022,462)(58,149,018 - 58,150,175)
sequence
gaattcaagataaataaatgagggtggttctttcctcttcccctgtctct
ccctctaaggctcaccttttacataaccttgccctttcacttgagtgtgg
gcagttaaccctgcagaattgggaaagtctttcttagaaagctagaggcc
tgcttgggaactgaaattgtataagacacttggaataacaaaatactttg
gtgaagtctgggtggtttccccattagtccactcttcctgctcctgcttg
ttctggtagctaccctacgtcatgccacatcttctcagccagtcattgtg
accgctcttctgtcccctgcacagaaggcagctcctgtagggagcttatg
cactccttctttgttcctcaaggttgttgcccccaatcctagttcacttg
tcttctctctccattcaaatgccagctcaaatgaaactaaagaggcacgg
gttcaacccaattggatggaggaagatgttaaaccacatccaaaaggacc
agctcccaggaagctttcccttagagttctccaaatagtcctccctccaa
tctgctccccatctgctgctgggagtcactctgccacctgtagaggatgt
ctttgaacatggtaagtgaatcagcaaagagggtcagcacacagaaactg
atggagtgtgggtcagctcctccagttttgttttcataatctagaagtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtagcagaaggagcta
cagatgggcaagaaggtacttctaagataaccagaatccttttatttatt
tctacccctagcctatttacaaattttaaatatatataaaatctcggttg
gttttgaaatttaaattgcaatacacaaaaaacagta
gaattcttttaaaatctctacacgttctatttatttatttttattttgag
aagtttaaattatgtagttgaaggtggcattgggttttcaatccgactgt
gcctgggattgtaagtatgtttctctgggcccggcttcctgaaagcactt
tttggtgcggttgttagctgagaccatcactctctaccaggcttattgat
ccaggcttctggccgttcttcattttctttcttccggctctagcatctgt
tgacacagtggctactcagaataaaacttcagacatatcccaaaacctta
catctgcctctgtgtgaaacgaaactcatattgcttcccttagccttcaa
cacacggcacaaggtttcccttcaattccctgatctcatttcctcctgct
ccccatttcctgccctctaggacgtgttttcaaactgaccagtcagtccc
ttatgtgtatgatacccgtgggtcgtgacccccttgggggctcaatgacc
cttttacagggtgtgcctaagactatcagaaagcacagggacattatgac
tcatagcagtggcaaaactgtacttatgaagtagcaatggaaataaatga
gtcccttgcactggctcccccctctcccgtgctggcatcaagaaactctg
cctgccattccttctttgtctgtgtcattgtctccaggacacttcctcag
aggacctttcaaggtccactcaatctaaagtgacatttcactctcatgat
gtgtttcctgctgattcatccttcagaactctcatcccatcttctgtccg
tgctactatgcagtggtctgcttagctgtctatgtttatgagagcatgca
tgctcggagagtaaggcctggcctcttcactccttaatttccagcaccca
gactaatggagtcatattccaagagcacgaggattatttgtgaaatgagt
gaatggatggacaggtttttcttctaaggacgagacttgtgaataacaaa
ggagaaaatgataaaattaaagtatcaaatattttgggaggattttcaaa
tttcccagccttgcatccatatcttacctctggctcccaaggccaatgtc
cacagtagtagcagctcccatcttgccctctatcgtggcttgcattggtg
ctttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_58021578_58022462
seq2: B6Ng01-297O03.b_47_933

seq1  GAATTCAAGATAAATAAATGAGGGTGGTTCTTTCCTCTTCCCCTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAAATAAATGAGGGTGGTTCTTTCCTCTTCCCCTGTCTCT  50

seq1  CCCTCTAAGGCTCACCTTTTACATAACCTTGCCCTTTCACTTGAGTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAGGCTCACCTTTTACATAACCTTGCCCTTTCACTTGAGTGTGG  100

seq1  GCAGTTAACCCTGCAGAATTGGGAAAGTCTTTCTTAGAAAGCTAGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAACCCTGCAGAATTGGGAAAGTCTTTCTTAGAAAGCTAGAGGCC  150

seq1  TGCTTGGGAACTGAAATTGTATAAGACACTTGGAATAACAAAATACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGAACTGAAATTGTATAAGACACTTGGAATAACAAAATACTTTG  200

seq1  GTGAAGTCTGGGTGGTTTCCCCATTAGTCCACTCTTCCTGCTCCTGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCTGGGTGGTTTCCCCATTAGTCCACTCTTCCTGCTCCTGCTTG  250

seq1  TTCTGGTAGCTACCCTACGTCATGCCACATCTTCTCAGCCAGTCATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAGCTACCCTACGTCATGCCACATCTTCTCAGCCAGTCATTGTG  300

seq1  ACCGCTCTTCTGTCCCCTGCACAGAAGGCAGCTCCTGTAGGGAGCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTCTTCTGTCCCCTGCACAGAAGGCAGCTCCTGTAGGGAGCTTATG  350

seq1  CACTCCTTCTTTGTTCCTCAAGGTTGTTGCCCCCAATCCTAGTTCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTCTTTGTTCCTCAAGGTTGTTGCCCCCAATCCTAGTTCACTTG  400

seq1  TCTTCTCTCTCCATTCAAATGCCAGCTCAAATGAAACTAAAGAGGCACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCTCCATTCAAATGCCAGCTCAAATGAAACTAAAGAGGCACGG  450

seq1  GTTCAACCCAATTGGATGGAGGAAGATGTTAAACCACATCCAAAAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACCCAATTGGATGGAGGAAGATGTTAAACCACATCCAAAAGGACC  500

seq1  AGCTCCCAGGAAGCTTTCCCTTAGAGTTCTCCAAATAGTCCTCCCTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGGAAGCTTTCCCTTAGAGTTCTCCAAATAGTCCTCCCTCCAA  550

seq1  TCTGCTCCCCATCTGCTGCTGGGAGTCACTCTGCCACCTGTAGAGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCCATCTGCTGCTGGGAGTCACTCTGCCACCTGTAGAGGATGT  600

seq1  CTTTGAACATGGTAAGTGAATCAGCAAAGAGGGTCAGCACACAGAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACATGGTAAGTGAATCAGCAAAGAGGGTCAGCACACAGAAACTG  650

seq1  ATGGAGTGTGGGTCAGCTCCTCCAGTTTTGTTTTCATAATCTAGAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTGGGTCAGCTCCTCCAGTTTTGTTTTCATAATCTAGAAGTGT  700

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTAGCAGAAGGAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTAGCAGAAGGAGCTA  750

seq1  CAGATGGGCAAGAAGGTAACTTCTAAGAAAACCAGAATCCTTTATTTTAT  800
      ||||||||||||||||| |||||||||| ||||||||||||||  |||||
seq2  CAGATGGGCAAGAAGGT-ACTTCTAAGATAACCAGAATCCTTTTATTTAT  799

seq1  TTCTA-CCCTAGCCTATTTAC-AATTTTAAATAGATATAAAATCTCGGTT  848
      ||||| ||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTCTACCCCTAGCCTATTTACAAATTTTAAATATATATAAAATCTCGGTT  849

seq1  -GTTTTGAGATTTAAA-TGCAATACAACGAAAAACAGTA  885
       ||||||| ||||||| |||||||| || ||||||||||
seq2  GGTTTTGAAATTTAAATTGCAATAC-ACAAAAAACAGTA  887

seq1: chr2_58149018_58150175
seq2: B6Ng01-297O03.g_67_1223 (reverse)

seq1  GCCAAAGGCCACAATGCAAGCAAAGATA-AGAGCAAGATGTGAGCTGGCT  49
      |||||| ||  |||||||||| | |||| || |||||||| ||||| |||
seq2  GCCAAA-GCACCAATGCAAGCCACGATAGAGGGCAAGATGGGAGCT-GCT  48

seq1  ACTACTGT-GACAATGGCCTTGGGAGCCAGAGGTAAGGATATGGATGCAA  98
      |||||||| |||| |||||||||||||||||||||| ||||||||||| |
seq2  ACTACTGTGGACATTGGCCTTGGGAGCCAGAGGTAA-GATATGGATGC-A  96

seq1  AGGCTGGGAAAATTTGAAAAATCCT-CCAAAATATTTGATACTTTTATTT  147
      |||||||| ||||||| |||||||| |||||||||||||||| |||| ||
seq2  AGGCTGGG-AAATTTG-AAAATCCTCCCAAAATATTTGATAC-TTTAATT  143

seq1  TTATCATTTTCTCC-TTGTTATTCAACAGTCTCGTCCTTAGA--GAAAAC  194
      |||||||||||||| ||||||||||  |||||||||||||||   |||||
seq2  TTATCATTTTCTCCTTTGTTATTCACAAGTCTCGTCCTTAGAAGAAAAAC  193

seq1  CTGTCCATCCATTCACTCATTTCACAAATAATCCTCGTGCTCTTGGAATA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCCATTCACTCATTTCACAAATAATCCTCGTGCTCTTGGAATA  243

seq1  TGACTCCATTAGTCTGGGTGCTGGAAATTAAGGAGTGAAGAGGCCAGGCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCATTAGTCTGGGTGCTGGAAATTAAGGAGTGAAGAGGCCAGGCC  293

seq1  TTACTCTCCGAGCATGCATGCTCTCATAAACATAGACAGCTAAGCAGACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTCCGAGCATGCATGCTCTCATAAACATAGACAGCTAAGCAGACC  343

seq1  ACTGCATAGTAGCACGGACAGAAGATGGGATGAGAGTTCTGAAGGATGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAGTAGCACGGACAGAAGATGGGATGAGAGTTCTGAAGGATGAA  393

seq1  TCAGCAGGAAACACATCATGAGAGTGAAATGTCACTTTAGATTGAGTGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGAAACACATCATGAGAGTGAAATGTCACTTTAGATTGAGTGGA  443

seq1  CCTTGAAAGGTCCTCTGAGGAAGTGTCCTGGAGACAATGACACAGACAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAGGTCCTCTGAGGAAGTGTCCTGGAGACAATGACACAGACAAA  493

seq1  GAAGGAATGGCAGGCAGAGTTTCTTGATGCCAGCACGGGAGAGGGGGGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGGCAGGCAGAGTTTCTTGATGCCAGCACGGGAGAGGGGGGAG  543

seq1  CCAGTGCAAGGGACTCATTTATTTCCATTGCTACTTCATAAGTACAGTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCAAGGGACTCATTTATTTCCATTGCTACTTCATAAGTACAGTTT  593

seq1  TGCCACTGCTATGAGTCATAATGTCCCTGTGCTTTCTGATAGTCTTAGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGCTATGAGTCATAATGTCCCTGTGCTTTCTGATAGTCTTAGGC  643

seq1  ACACCCTGTAAAAGGGTCATTGAGCCCCCAAGGGGGTCACGACCCACGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTAAAAGGGTCATTGAGCCCCCAAGGGGGTCACGACCCACGGG  693

seq1  TATCATACACATAAGGGACTGACTGGTCAGTTTGAAAACACGTCCTAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATACACATAAGGGACTGACTGGTCAGTTTGAAAACACGTCCTAGAG  743

seq1  GGCAGGAAATGGGGAGCAGGAGGAAATGAGATCAGGGAATTGAAGGGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAATGGGGAGCAGGAGGAAATGAGATCAGGGAATTGAAGGGAAA  793

seq1  CCTTGTGCCGTGTGTTGAAGGCTAAGGGAAGCAATATGAGTTTCGTTTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCCGTGTGTTGAAGGCTAAGGGAAGCAATATGAGTTTCGTTTCA  843

seq1  CACAGAGGCAGATGTAAGGTTTTGGGATATGTCTGAAGTTTTATTCTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCAGATGTAAGGTTTTGGGATATGTCTGAAGTTTTATTCTGAG  893

seq1  TAGCCACTGTGTCAACAGATGCTAGAGCCGGAAGAAAGAAAATGAAGAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTGTGTCAACAGATGCTAGAGCCGGAAGAAAGAAAATGAAGAAC  943

seq1  GGCCAGAAGCCTGGATCAATAAGCCTGGTAGAGAGTGATGGTCTCAGCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGCCTGGATCAATAAGCCTGGTAGAGAGTGATGGTCTCAGCTA  993

seq1  ACAACCGCACCAAAAAGTGCTTTCAGGAAGCCGGGCCCAGAGAAACATAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCGCACCAAAAAGTGCTTTCAGGAAGCCGGGCCCAGAGAAACATAC  1043

seq1  TTACAATCCCAGGCACAGTCGGATTGAAAACCCAATGCCACCTTCAACTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATCCCAGGCACAGTCGGATTGAAAACCCAATGCCACCTTCAACTA  1093

seq1  CATAATTTAAACTTCTCAAAATAAAAATAAATAAATAGAACGTGTAGAGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAAACTTCTCAAAATAAAAATAAATAAATAGAACGTGTAGAGA  1143

seq1  TTTTAAAAGAATTC  1158
      ||||||||||||||
seq2  TTTTAAAAGAATTC  1157