BAC Information

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BAC

Clone NameB6Ng01-297O24
Chromosome2 (Build37)
Map Location 84,412,108 - 84,553,952
singlet/doubletdoublet
Overlap geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5
Upstream geneZc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763
Downstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297O24.bB6Ng01-297O24.g
ACCGA093176GA093177
length1,0561,084
definitionB6Ng01-297O24.b B6Ng01-297O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,412,108 - 84,413,166)(84,552,860 - 84,553,952)
sequence
gaattctctttaatagggacggggtttcgttttttctctctctcttgctt
cttactctctcttgcttcttgcactctggctcctgaagatgtaagcaata
aagttttgccgcagaagattctggtttgttgcgtctttcctggccggtcg
tgagaacgcggctaataacacttggacaagtccatctcttttgatggctg
tgtggtccagctaatcatctttgtggtacatgtgactgttgggagcttct
tgatggtctctatggccatggcccatgacccagttcatgacaatttgtca
gtccctctgttataatgtcatgactaaagcaacctgtcccagctgaggct
gcttcccatgcatttggtgaacctaattctgctagtcagaatacgaatgt
ctttaccctgcctttctgtgagcccatccaggtaccatactgtctgtgac
atccactcctctccacttatgtcaacatggccatagcagaagtggtcctt
tatatcttctcttcgctagttacccttctacctgccacagtcatccccat
tttctatagatgtactcgctgattttgggtgctgtactggctagttttgt
gtcaacttgacacagctggagttatcacagagaaaggagcttcagttgag
gaaatgcctccatgagatccaactgtaaggcattttctcaattagagatc
aagggtgaaaggccccttgtgggtgggaccatctctgggttggtagtcct
ggggtatataagagagcaggctgagcaagccaggggaagcaagccagtaa
agaacatccctccatggcctctgcatcagctcctgcttcctgccctgctt
gagttccagtcctgacttcctttggtgatgaacaacagtatggaagtgta
agctgaataaaccctttcctccccaacttgcctcttggtcatgatgttgt
gcaggaatagaaaccctgactagacaggtgtcaacttgacacaggctaga
gttatcacagagaaaggagttcaggttggggaaatgcctccatgagatca
gctgta
gaattcactttgtaagaccaagctgatttctaactcagagttctgacttc
ctgtgcctcccaagtgctgggattgaggtcgagagctaccacacctggct
ctgtattgtttgttttatacatacatattttcactcagtgatttttttcc
ccctcagtcagcatgtgtcacgaacattcttgtccactttagtgatactg
ttgtggatacaccagcttgtgactgatgaaccacactcgcctttccggtt
tcgtcccttctctttctgcaccacattcctttgataagacttggtgtgtt
gatatttatacccaataaattattttatcttgtcccttctaatatctatc
ttaacatttcagacgatggtctcatttatatttcagtatgcggttccata
attgcatgtactgtaccgtggcagaattagtctgtgtggctttcgtcctg
tagtaaatgtgacctgcaatagtataggattcactttacgtaatagttag
gtaattttccttttatctttggagttttgagggaaacggttcctttaata
atactgtctacaaatcaaatttgcttgttccagttgataaagatatttag
gcctaaagtcaggaaacagaaataagcataaaatcaggactaaataggat
ctggtttttagttggaccatagaaacttaatggaatctttgggccttctt
tctaatgttacttaaccctcccccctccctccctccttcccccctctctc
ccatcttatttatttattaaatttttcttttgggacaaagtcttactatg
tagcccttgctggcctggaagctatgcataccaggatggcttggagagat
ccacctgcctctgcttttcttttcttctttcttcttctttcttttttttt
ttttttttcccaagaacaggtttctctgtatagctctggctgtcctggaa
ctcattctgtagaccaggttgacctcgaattctagaaatccgcctgcctc
ttccttcaagcgctgggaataaaggtgttgcgcccaccacgccttgctct
gcctttgtttctgagtgcggaaataaaggcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_84412108_84413166
seq2: B6Ng01-297O24.b_47_1102

seq1  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTTTCTCTCTCTCTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAATAGGGACGGGGTTTCGTTTTTTCTCTCTCTCTTGCTT  50

seq1  CTTACTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTCTCTTGCTTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATA  100

seq1  AAGTTTTGCCGCAGAAGATTCTGGTTTGTTGCGTCTTTCCTGGCCGGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGCCGCAGAAGATTCTGGTTTGTTGCGTCTTTCCTGGCCGGTCG  150

seq1  TGAGAACGCGGCTAATAACACTTGGACAAGTCCATCTCTTTTGATGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACGCGGCTAATAACACTTGGACAAGTCCATCTCTTTTGATGGCTG  200

seq1  TGTGGTCCAGCTAATCATCTTTGTGGTACATGTGACTGTTGGGAGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCCAGCTAATCATCTTTGTGGTACATGTGACTGTTGGGAGCTTCT  250

seq1  TGATGGTCTCTATGGCCATGGCCCATGACCCAGTTCATGACAATTTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCTCTATGGCCATGGCCCATGACCCAGTTCATGACAATTTGTCA  300

seq1  GTCCCTCTGTTATAATGTCATGACTAAAGCAACCTGTCCCAGCTGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTGTTATAATGTCATGACTAAAGCAACCTGTCCCAGCTGAGGCT  350

seq1  GCTTCCCATGCATTTGGTGAACCTAATTCTGCTAGTCAGAATACGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCATGCATTTGGTGAACCTAATTCTGCTAGTCAGAATACGAATGT  400

seq1  CTTTACCCTGCCTTTCTGTGAGCCCATCCAGGTACCATACTGTCTGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCTGCCTTTCTGTGAGCCCATCCAGGTACCATACTGTCTGTGAC  450

seq1  ATCCACTCCTCTCCACTTATGTCAACATGGCCATAGCAGAAGTGGTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCCTCTCCACTTATGTCAACATGGCCATAGCAGAAGTGGTCCTT  500

seq1  TATATCTTCTCTTCGCTAGTTACCCTTCTACCTGCCACAGTCATCCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCTCTTCGCTAGTTACCCTTCTACCTGCCACAGTCATCCCCAT  550

seq1  TTTCTATAGATGTACTCGCTGATTTTGGGTGCTGTACTGGCTAGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAGATGTACTCGCTGATTTTGGGTGCTGTACTGGCTAGTTTTGT  600

seq1  GTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAG  650

seq1  GAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGAGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGAGATC  700

seq1  AAGGGTGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGTTGGTAGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGTTGGTAGTCCT  750

seq1  GGGGTATATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAA  800

seq1  AGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGCCCTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGCCCTGCTT  850

seq1  GAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAACAGTATGGAAGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAACAGTATGGAAGTGTA  900

seq1  AGCTGAATAAACCCTTTCCTCCCCAACTTGCCTCTTGGTCATGATGTTTG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTGAATAAACCCTTTCCTCCCCAACTTGCCTCTTGGTCATGATG-TTG  949

seq1  TGCAGGAATAGAAACCCTGACTAAGACAGGTGTCAACTTGACACAGGCTA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCAGGAATAGAAACCCTGACT-AGACAGGTGTCAACTTGACACAGGCTA  998

seq1  GAGTTATCACAGAGAAAGGAGTTTCAGTTGGGGAAATGCCTCCATGAGAT  1050
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  GAGTTATCACAGAGAAAGGAGTTCAGGTTGGGGAAATGCCTCCATGAGAT  1048

seq1  CCAGCTGTA  1059
       ||||||||
seq2  -CAGCTGTA  1056

seq1: chr2_84552860_84553952
seq2: B6Ng01-297O24.g_67_1150 (reverse)

seq1  GAATGCCTTTAATCTCCGCACTCAAGAAACAGAGGCAGAGCCAGGCGTGG  50
      |||||||||| || ||||||||| ||||||| ||||||||| ||||||||
seq2  GAATGCCTTT-ATTTCCGCACTC-AGAAACAAAGGCAGAGCAAGGCGTGG  48

seq1  T-GGCGC-ACACCTTTAATCCCAGCGCTTGGAAGGAAGAGGCAGGCGGAT  98
      | ||||| ||||||||| ||||||||||| ||||||||||||||||||||
seq2  TGGGCGCAACACCTTTATTCCCAGCGCTT-GAAGGAAGAGGCAGGCGGAT  97

seq1  TTCTAGAATTCGAGGTCAACCTGGTCTACAGAATGAGTTCCAGGACAGCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAATTCGAGGTCAACCTGGTCTACAGAATGAGTTCCAGGACAGCC  147

seq1  AGAGCTATACAGAGAAACCCTGTCTTGGGGAAAAAAAAAAAAAAAAAAAA  198
      |||||||||||||||||||   |||||||    |||||||||||||||||
seq2  AGAGCTATACAGAGAAACCTGTTCTTGGG----AAAAAAAAAAAAAAAAA  193

seq1  GAAAGAAAGAAAGAAAGAAAGAAAAAGAAAAGCAGAGGCAGGTGGATCTC  248
      |||||||   |||||||||   ||||||||||||||||||||||||||||
seq2  GAAAGAA--GAAGAAAGAA--GAAAAGAAAAGCAGAGGCAGGTGGATCTC  239

seq1  TCCAAGCCATCCTGGTATGCATAGCTTCCAGGCCAGCAAGGGCTACATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCATCCTGGTATGCATAGCTTCCAGGCCAGCAAGGGCTACATAG  289

seq1  TAAGACTTTGTCCCAAAAGAAAAATTTAATAAATAAATAAGATGGGAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTGTCCCAAAAGAAAAATTTAATAAATAAATAAGATGGGAGAG  339

seq1  AGGGGGGAAGGAGGGAGGGAGGGGGGAGGGTTAAGTAACATTAGAAAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGAAGGAGGGAGGGAGGGGGGAGGGTTAAGTAACATTAGAAAGAA  389

seq1  GGCCCAAAGATTCCATTAAGTTTCTATGGTCCAACTAAAAACCAGATCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAGATTCCATTAAGTTTCTATGGTCCAACTAAAAACCAGATCCT  439

seq1  ATTTAGTCCTGATTTTATGCTTATTTCTGTTTCCTGACTTTAGGCCTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCCTGATTTTATGCTTATTTCTGTTTCCTGACTTTAGGCCTAAA  489

seq1  TATCTTTATCAACTGGAACAAGCAAATTTGATTTGTAGACAGTATTATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATCAACTGGAACAAGCAAATTTGATTTGTAGACAGTATTATTA  539

seq1  AAGGAACCGTTTCCCTCAAAACTCCAAAGATAAAAGGAAAATTACCTAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCGTTTCCCTCAAAACTCCAAAGATAAAAGGAAAATTACCTAAC  589

seq1  TATTACGTAAAGTGAATCCTATACTATTGCAGGTCACATTTACTACAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACGTAAAGTGAATCCTATACTATTGCAGGTCACATTTACTACAGGA  639

seq1  CGAAAGCCACACAGACTAATTCTGCCACGGTACAGTACATGCAATTATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGCCACACAGACTAATTCTGCCACGGTACAGTACATGCAATTATGG  689

seq1  AACCGCATACTGAAATATAAATGAGACCATCGTCTGAAATGTTAAGATAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCATACTGAAATATAAATGAGACCATCGTCTGAAATGTTAAGATAG  739

seq1  ATATTAGAAGGGACAAGATAAAATAATTTATTGGGTATAAATATCAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAGGGACAAGATAAAATAATTTATTGGGTATAAATATCAACAC  789

seq1  ACCAAGTCTTATCAAAGGAATGTGGTGCAGAAAGAGAAGGGACGAAACCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCTTATCAAAGGAATGTGGTGCAGAAAGAGAAGGGACGAAACCG  839

seq1  GAAAGGCGAGTGTGGTTCATCAGTCACAAGCTGGTGTATCCACAACAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCGAGTGTGGTTCATCAGTCACAAGCTGGTGTATCCACAACAGTA  889

seq1  TCACTAAAGTGGACAAGAATGTTCGTGACACATGCTGACTGAGGGGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAGTGGACAAGAATGTTCGTGACACATGCTGACTGAGGGGGAAA  939

seq1  AAAATCACTGAGTGAAAATATGTATGTATAAAACAAACAATACAGAGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACTGAGTGAAAATATGTATGTATAAAACAAACAATACAGAGCCA  989

seq1  GGTGTGGTAGCTCTCGACCTCAATCCCAGCACTTGGGAGGCACAGGAAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTAGCTCTCGACCTCAATCCCAGCACTTGGGAGGCACAGGAAGT  1039

seq1  CAGAACTCTGAGTTAGAAATCAGCTTGGTCTTACAAAGTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCTGAGTTAGAAATCAGCTTGGTCTTACAAAGTGAATTC  1084