BAC Information

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BAC

Clone NameB6Ng01-299A15
Chromosome2 (Build37)
Map Location 76,523,777 - 76,656,909
singlet/doubletdoublet
Overlap genePlekha3, Ttn
Upstream geneNfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299A15.bB6Ng01-299A15.g
ACCGA093989GA093990
length1,1391,088
definitionB6Ng01-299A15.b B6Ng01-299A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,523,777 - 76,524,912)(76,655,798 - 76,656,909)
sequence
gaattcattgcaggcggttgtgagccaccatgtggttgctgggacttgaa
ctcaggacctttggaagagcagtcagtgcttttacctgctgagccatctt
gccagccccaatactgtttttaatatattagaacttttacagattatcaa
cttatgtattaaaagaaaactcctaccagagctggaaaagaatgtaggag
gaaaagaaaaacgctggtgcatggagtagaaaatgcgggcttcacgtgga
agaatggattggggtggctgtgtagttaaaacacccagtggtcaggctag
caggctgtatcagtgagtagagatgctgtgtacagacctcgagatgagaa
tgcgattttggggtctcacacggtggcaggagaagcagcaacttctgaga
tgtcttctgccctctccatgtgccatggcacatgcatgtgtaattgcatt
catgcaatgttctctctccctcctctccccatcccggatatgtctgtctg
tctgtctgtctgtctgtctgtctgtctgtgtccatgcacatacatacatg
tggaggtttgttggaagtcagtctctctccaccttatttttctaagtctt
aggctgaacctggcgctcagtgatagggtacactagctggtcggccggct
ctgagcgtccttctcctcctggtgctcagttataggggtacacaagctga
ccagcaggcgcctggagtcctcctgtcctcgcctcccagtgctaggatta
catgccaccactgggtccaacttttattatctgaagatacaacttgggtc
ctcatatttaggcaacaagcatttttgccatggcctctgttggttgtttt
attgtattaggaaaatgacctggttttatatctcttgtgtttcttttaga
aataagtgagaccagtgaatctctgaaaaccaaaatgtctgaacttcgcc
tctactgtgacctcctgatgcagcagtttcatacgatcaggaattcgtcc
accgtgatgagaagccatccctcctcccaggtgtggaggtaccgctttcc
caagttccctctgcccgggatcagaaccttggcaatgtcctgcccttggg
gcacccttaggccacttctacgatgaatcaccacccaga
gaattcacaccaaatttgaaatcatatccttttaagtgcctacagctgaa
aagaaagttcgtaaattacttcctgaacctaagccgcagccaaaggaaga
ggtggtgctgaaaagcggtacagtacttttctaccagacatcaattttca
acagctcggaaaatggactcaccctgaaagctcacaaaatacttctgccc
ttgattttattttacttagattctccatcaaactttgaatgtagttccac
taaaaattaaaggttatcatttcttaatcttttcagagagaaggtagata
ttttgtgagcattcatagtattttgaaattgataatgttaacagatacaa
ctaaactggtaatattctaacaacaattaccatgggtgtcattttttata
accaaattgtgaaataaaatatactcaacttttaaaatactgtataccaa
ctacttaaacctaaatatattcaatttcagtataatacaagatcaccaca
accaataatactttttataaaactaaacatctttcctactaaatatgaaa
aaaattagatacaaatactcacaaaaataaaattctaaccttcttccata
tacagttatggatctctaagcttcattctgatttctgcacttaaactacc
tttaattcaagtagttttcaataaattgtttaattagaatttgttgctat
ttaaataattttttatttgaatcagttttgccccacagttgtctctgggc
atagaatctagagagagatagagtgtttctaggtctgatatgaattaaca
taacaaatgtttattgggttgtgggaaatgaaggcatttctcatgtagat
gctaatctcccactgtgctagctgcatgcctttcattgttcttgctcacc
caccatctgtgttcattaagcttattcaacatcttcattcattcattcgc
tcatcttggttacatataaaccttttttgtcttttaagtctagaaagaac
ccgagagagactaagtagactaaaaagtagaaaaagctaaaatgagtagg
atcattcatatgccatttatgaaatttctctttcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76523777_76524912
seq2: B6Ng01-299A15.b_46_1184

seq1  GAATTCATTGCAGGCGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGGCGGTTGTGAGCCACCATGTGGTTGCTGGGACTTGAA  50

seq1  CTCAGGACCTTTGGAAGAGCAGTCAGTGCTTTTACCTGCTGAGCCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACCTTTGGAAGAGCAGTCAGTGCTTTTACCTGCTGAGCCATCTT  100

seq1  GCCAGCCCCAATACTGTTTTTAATATATTAGAACTTTTACAGATTATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCCAATACTGTTTTTAATATATTAGAACTTTTACAGATTATCAA  150

seq1  CTTATGTATTAAAAGAAAACTCCTACCAGAGCTGGAAAAGAATGTAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTATTAAAAGAAAACTCCTACCAGAGCTGGAAAAGAATGTAGGAG  200

seq1  GAAAAGAAAAACGCTGGTGCATGGAGTAGAAAATGCGGGCTTCACGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAACGCTGGTGCATGGAGTAGAAAATGCGGGCTTCACGTGGA  250

seq1  AGAATGGATTGGGGTGGCTGTGTAGTTAAAACACCCAGTGGTCAGGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATTGGGGTGGCTGTGTAGTTAAAACACCCAGTGGTCAGGCTAG  300

seq1  CAGGCTGTATCAGTGAGTAGAGATGCTGTGTACAGACCTCGAGATGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTATCAGTGAGTAGAGATGCTGTGTACAGACCTCGAGATGAGAA  350

seq1  TGCGATTTTGGGGTCTCACACGGTGGCAGGAGAAGCAGCAACTTCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATTTTGGGGTCTCACACGGTGGCAGGAGAAGCAGCAACTTCTGAGA  400

seq1  TGTCTTCTGCCCTCTCCATGTGCCATGGCACATGCATGTGTAATTGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGCCCTCTCCATGTGCCATGGCACATGCATGTGTAATTGCATT  450

seq1  CATGCAATGTTCTCTCTCCCTCCTCTCCCCATCCCGGATATGTCTGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATGTTCTCTCTCCCTCCTCTCCCCATCCCGGATATGTCTGTCTG  500

seq1  TCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTCCATGCACATACATACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTCCATGCACATACATACATG  550

seq1  TGGAGGTTTGTTGGAAGTCAGTCTCTCTCCACCTTATTTTTCTAAGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTTGTTGGAAGTCAGTCTCTCTCCACCTTATTTTTCTAAGTCTT  600

seq1  AGGCTGAACCTGGCGCTCAGTGATAGGGTACACTAGCTGGTCGGCCGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAACCTGGCGCTCAGTGATAGGGTACACTAGCTGGTCGGCCGGCT  650

seq1  CTGAGCGTCCTTCTCCTCCTGGTGCTCAGTTATAGGGGTACACAAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCGTCCTTCTCCTCCTGGTGCTCAGTTATAGGGGTACACAAGCTGA  700

seq1  CCAGCAGGCGCCTGGAGTCCTCCTGTCCTCGCCTCCCAGTGCTAGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGCGCCTGGAGTCCTCCTGTCCTCGCCTCCCAGTGCTAGGATTA  750

seq1  CATGCCACCACTGGGTCCAACTTTTATTATCTGAAGATACAACTTGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCACTGGGTCCAACTTTTATTATCTGAAGATACAACTTGGGTC  800

seq1  CTCATATTTAGGCAACAAGCATTTTTGCCATGGCCTCTGTTGGTTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTAGGCAACAAGCATTTTTGCCATGGCCTCTGTTGGTTGTTTT  850

seq1  ATTGTATTAGGAAAATGACCTGGTTTTATATCTCTTGTGTTTCTTTTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTAGGAAAATGACCTGGTTTTATATCTCTTGTGTTTCTTTTAGA  900

seq1  AATAAGTGAGACCAGTGAATCTCTGAAAACCAAAATGTCTGAACTTCGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTGAGACCAGTGAATCTCTGAAAACCAAAATGTCTGAACTTCGCC  950

seq1  TCTACTGTGACCTCCTGATGCAGCAGGTTCATACGATCCAGGAATTCGTC  1000
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TCTACTGTGACCTCCTGATGCAGCAGTTTCATACGAT-CAGGAATTCGTC  999

seq1  CACCGTGATGAG-AGGCATCCCT-CTCCCA-GTGTGGAGGTACCGCTTTC  1047
      |||||||||||| || ||||||| |||||| |||||||||||||||||||
seq2  CACCGTGATGAGAAGCCATCCCTCCTCCCAGGTGTGGAGGTACCGCTTTC  1049

seq1  CCCAG-TCCCTCTGCCCGGGATCAGA--CTTTGCCATGTCCTGCCC-TGG  1093
      || || ||||||||||||||||||||  ||| || ||||||||||| |||
seq2  CCAAGTTCCCTCTGCCCGGGATCAGAACCTTGGCAATGTCCTGCCCTTGG  1099

seq1  GGCACCCTTA-GCCACTTCCTACGATGAAAATCACCACCACAGA  1136
      |||||||||| ||||||| ||||||||  |||||||||| ||||
seq2  GGCACCCTTAGGCCACTT-CTACGATG--AATCACCACC-CAGA  1139

seq1: chr2_76655798_76656909
seq2: B6Ng01-299A15.g_67_1154 (reverse)

seq1  TGATGAAAGAG-AATTTCATAAATTGCCATTAATGGAAATGATTCCTACC  49
      ||||||||||| ||||||||||| || |||  |||  ||||| |||||| 
seq2  TGATGAAAGAGAAATTTCATAAA-TGGCAT--ATG--AATGA-TCCTAC-  43

seq1  TTCCGGTTTTTTAGCTTTTTCTACTTTTTTAGGTTCTACTTTAGGTTCTT  99
       ||     |||||||||||||||| |||||||  ||||| ||||     |
seq2  -TC----ATTTTAGCTTTTTCTAC-TTTTTAG--TCTAC-TTAG-----T  79

seq1  CTTCCTCGGGTTTCTTTCTTAGAACTTAAAAGACAAAAAAGGTTTATATG  149
      ||  |||||| ||||||| ||| |||||||||||||||||||||||||||
seq2  CTCTCTCGGG-TTCTTTC-TAG-ACTTAAAAGACAAAAAAGGTTTATATG  126

seq1  TAAACCAAGATGAGCGAATGAATGAATGAAGATGTTGAATAAGCTTAATG  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AACCAAGATGAGCGAATGAATGAATGAAGATGTTGAATAAGCTTAATG  175

seq1  AACACAGATGGTGGGTGAGCAAGAACAATGAAAGGCATGCAGCTAGCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATGGTGGGTGAGCAAGAACAATGAAAGGCATGCAGCTAGCACA  225

seq1  GTGGGAGATTAGCATCTACATGAGAAATGCCTTCATTTCCCACAACCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGATTAGCATCTACATGAGAAATGCCTTCATTTCCCACAACCCAA  275

seq1  TAAACATTTGTTATGTTAATTCATATCAGACCTAGAAACACTCTATCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTGTTATGTTAATTCATATCAGACCTAGAAACACTCTATCTCT  325

seq1  CTCTAGATTCTATGCCCAGAGACAACTGTGGGGCAAAACTGATTCAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTCTATGCCCAGAGACAACTGTGGGGCAAAACTGATTCAAATA  375

seq1  AAAAATTATTTAAATAGCAACAAATTCTAATTAAACAATTTATTGAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTTAAATAGCAACAAATTCTAATTAAACAATTTATTGAAAAC  425

seq1  TACTTGAATTAAAGGTAGTTTAAGTGCAGAAATCAGAATGAAGCTTAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATTAAAGGTAGTTTAAGTGCAGAAATCAGAATGAAGCTTAGAG  475

seq1  ATCCATAACTGTATATGGAAGAAGGTTAGAATTTTATTTTTGTGAGTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAACTGTATATGGAAGAAGGTTAGAATTTTATTTTTGTGAGTATT  525

seq1  TGTATCTAATTTTTTTCATATTTAGTAGGAAAGATGTTTAGTTTTATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAATTTTTTTCATATTTAGTAGGAAAGATGTTTAGTTTTATAAA  575

seq1  AAGTATTATTGGTTGTGGTGATCTTGTATTATACTGAAATTGAATATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATTGGTTGTGGTGATCTTGTATTATACTGAAATTGAATATATT  625

seq1  TAGGTTTAAGTAGTTGGTATACAGTATTTTAAAAGTTGAGTATATTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAAGTAGTTGGTATACAGTATTTTAAAAGTTGAGTATATTTTAT  675

seq1  TTCACAATTTGGTTATAAAAAATGACACCCATGGTAATTGTTGTTAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATTTGGTTATAAAAAATGACACCCATGGTAATTGTTGTTAGAAT  725

seq1  ATTACCAGTTTAGTTGTATCTGTTAACATTATCAATTTCAAAATACTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAGTTTAGTTGTATCTGTTAACATTATCAATTTCAAAATACTATG  775

seq1  AATGCTCACAAAATATCTACCTTCTCTCTGAAAAGATTAAGAAATGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCACAAAATATCTACCTTCTCTCTGAAAAGATTAAGAAATGATAA  825

seq1  CCTTTAATTTTTAGTGGAACTACATTCAAAGTTTGATGGAGAATCTAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTTTTAGTGGAACTACATTCAAAGTTTGATGGAGAATCTAAGT  875

seq1  AAAATAAAATCAAGGGCAGAAGTATTTTGTGAGCTTTCAGGGTGAGTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATCAAGGGCAGAAGTATTTTGTGAGCTTTCAGGGTGAGTCCA  925

seq1  TTTTCCGAGCTGTTGAAAATTGATGTCTGGTAGAAAAGTACTGTACCGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGAGCTGTTGAAAATTGATGTCTGGTAGAAAAGTACTGTACCGCT  975

seq1  TTTCAGCACCACCTCTTCCTTTGGCTGCGGCTTAGGTTCAGGAAGTAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCACCACCTCTTCCTTTGGCTGCGGCTTAGGTTCAGGAAGTAATT  1025

seq1  TACGAACTTTCTTTTCAGCTGTAGGCACTTAAAAGGATATGATTTCAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAACTTTCTTTTCAGCTGTAGGCACTTAAAAGGATATGATTTCAAAT  1075

seq1  TTGGTGTGAATTC  1112
      |||||||||||||
seq2  TTGGTGTGAATTC  1088