BAC Information

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BAC

Clone NameB6Ng01-299B15
Chromosome2 (Build37)
Map Location 127,394,833 - 127,556,538
singlet/doubletdoublet
Overlap geneZfp661, Mrps5, Mal, LOC668892, Mall
Upstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2
Downstream geneNphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B15.bB6Ng01-299B15.g
ACCGA094037GA094038
length1,1881,094
definitionB6Ng01-299B15.b B6Ng01-299B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,394,833 - 127,396,015)(127,555,443 - 127,556,538)
sequence
gaattcactgatgttgagtgaggtaggagctctggttaaaggccttgcca
cattcattacactcatagggtttctctccagtgtggattatgtgatgtcg
aataaggattgagcggtggctgaaggccttcccacacttgagacacttgt
agggcttctctccagtgtgaatcctctggtgtagggtaagatgtatgctc
aggctaaaggccttcccacattcattgcactcgtagggcttttctcctgt
gtgagttctccgatgcaggatgaaggcggagtagtaactgaacgccttcc
tgcactcattacattgccgaggttccctccctgcacgtgttttctcttgt
ttaatcatttctgaacttgtaaaattcttaagtgaaccacagttatcaag
tttctctccttggtgttgaacaagtagtgaccgctgcctaaaattccttc
taaattcatcacgttggcagcctctctccacagaaggtctcttctggggg
accggctctcgtcttggatgcttcttgcagttttcctgccgattttctac
agactcttcacagtccctggccctttcctcgagaaagctctccagcaacg
ctccaggggactgttcctcttcagaaaagtgcttctctggacttagcctc
attctctgtttttgtctcccactctgaaagaaagaaattgcatacacata
gaaaaataacctctatactagagaataataaaacaaataaaaatgatggc
agaaaacacattcacttcaaagctctcaaaaagagtcttgtactgttggg
agtgcatgagaaaaaaagatgactgactgagaaaaggtaatgcaaaaagg
gaaagggtgagcagcagggctttagtcagtcaaaaccagggtctgtggga
cacaaggatgggaccagaaaagaagcctctaggaacttagtcatactttc
actgaatacccgaacaaaggccatctttaattttcttctggctatacttt
tgcccatgttctcatgtcctaacatactaaaactaatctcttttacacac
acacacaaatgcatacaaattgggtttgctgctgtttgaaaccaggattg
gaaattctaggagtagtatttcaatgtccgttatgtattctacttattcc
agttatcatgaagccttaagaagagttcgagaaaatac
gaattccctgctgttgctaaggaacaagacacagggctcttgtgcaggac
atcccccagtccttgggacaactcttccatgcctcctctcctactcctga
ggaggcttttcaactggcctgctggagccgaagaggggaggaagaaggct
ctggggcgccaggccttccctcagggcggtgggaaaacaaaccaaggtta
gtgggttgttaaagaagaaggtggcccagtctccagccctgcctggcgtt
gtgtgaaaggaagagctttgggtctggaagcacagccaagcagccagccc
caggctctaagcaggaaggaactgcctggtcccaaccctgtgtcctagct
ggactagaacgacagtgagaggaggacccaagagggactcagagtacctg
aggagggaggtgaaaaccaggctgctccaatccttcatttagactctgag
gacaaaagcagatgctgcttttgtgaccactctgtgaccttaactggaaa
ggtacaacaaagccacgtggtggtggtctatctgaacttcagaagtgtct
gaaggtggctaaccacacagtaggtcctcagtaaacaatctttatcttag
caaaagagcccttgcttacactctgagcatagagatcaccaggagcatac
atacaaagctgttcctttcatctcttctggagtcctttgctccagcattc
aaagttccttagcagggaaagtctagaaagaccctctgcgaggctggtcc
tgtcccctctcctggctagcacagtgcacagaaagggcccccgctctact
ggaacctttcttttcccctcccaggcgacgtccctccgaccgatgggtgt
gtctgtctgtcgggcgggaggtgattcttgaacagctgcgggcgcaggcg
agtgctacggagtaagacgccagcagaggtgacagcatggcctcccggga
cacaccgcccggccaccagctacgccccgctgacgtgccctcgggggtcg
ccgccttgtcttcacatcccctttgcttcttcttaccggagctggtgagt
ggactgccccacctgcggggagggaagggtcagacccgggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_127394833_127396015
seq2: B6Ng01-299B15.b_45_1232

seq1  GAATTCACTGATGTTGAGTGAGGTAGGAGCTCTGGTTAAAGGCCTTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATGTTGAGTGAGGTAGGAGCTCTGGTTAAAGGCCTTGCCA  50

seq1  CATTCATTACACTCATAGGGTTTCTCTCCAGTGTGGATTATGTGATGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTACACTCATAGGGTTTCTCTCCAGTGTGGATTATGTGATGTCG  100

seq1  AATAAGGATTGAGCGGTGGCTGAAGGCCTTCCCACACTTGAGACACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGATTGAGCGGTGGCTGAAGGCCTTCCCACACTTGAGACACTTGT  150

seq1  AGGGCTTCTCTCCAGTGTGAATCCTCTGGTGTAGGGTAAGATGTATGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTCTCCAGTGTGAATCCTCTGGTGTAGGGTAAGATGTATGCTC  200

seq1  AGGCTAAAGGCCTTCCCACATTCATTGCACTCGTAGGGCTTTTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGGCCTTCCCACATTCATTGCACTCGTAGGGCTTTTCTCCTGT  250

seq1  GTGAGTTCTCCGATGCAGGATGAAGGCGGAGTAGTAACTGAACGCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTCCGATGCAGGATGAAGGCGGAGTAGTAACTGAACGCCTTCC  300

seq1  TGCACTCATTACATTGCCGAGGTTCCCTCCCTGCACGTGTTTTCTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCATTACATTGCCGAGGTTCCCTCCCTGCACGTGTTTTCTCTTGT  350

seq1  TTAATCATTTCTGAACTTGTAAAATTCTTAAGTGAACCACAGTTATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTCTGAACTTGTAAAATTCTTAAGTGAACCACAGTTATCAAG  400

seq1  TTTCTCTCCTTGGTGTTGAACAAGTAGTGACCGCTGCCTAAAATTCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTTGGTGTTGAACAAGTAGTGACCGCTGCCTAAAATTCCTTC  450

seq1  TAAATTCATCACGTTGGCAGCCTCTCTCCACAGAAGGTCTCTTCTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATCACGTTGGCAGCCTCTCTCCACAGAAGGTCTCTTCTGGGGG  500

seq1  ACCGGCTCTCGTCTTGGATGCTTCTTGCAGTTTTCCTGCCGATTTTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCTCTCGTCTTGGATGCTTCTTGCAGTTTTCCTGCCGATTTTCTAC  550

seq1  AGACTCTTCACAGTCCCTGGCCCTTTCCTCGAGAAAGCTCTCCAGCAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTCACAGTCCCTGGCCCTTTCCTCGAGAAAGCTCTCCAGCAACG  600

seq1  CTCCAGGGGACTGTTCCTCTTCAGAAAAGTGCTTCTCTGGACTTAGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGGACTGTTCCTCTTCAGAAAAGTGCTTCTCTGGACTTAGCCTC  650

seq1  ATTCTCTGTTTTTGTCTCCCACTCTGAAAGAAAGAAATTGCATACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTTTTTGTCTCCCACTCTGAAAGAAAGAAATTGCATACACATA  700

seq1  GAAAAATAACCTCTATACTAGAGAATAATAAAACAAATAAAAATGATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAACCTCTATACTAGAGAATAATAAAACAAATAAAAATGATGGC  750

seq1  AGAAAACACATTCACTTCAAAGCTCTCAAAAAGAGTCTTGTACTGTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACATTCACTTCAAAGCTCTCAAAAAGAGTCTTGTACTGTTGGG  800

seq1  AGTGCATGAGAAAAAAAGATGACTGACTGAGAAAAGGTAATGCAAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGAGAAAAAAAGATGACTGACTGAGAAAAGGTAATGCAAAAAGG  850

seq1  GAAGGGGTGAGCAGCAGGGCTTTAGTCAGTCAAAACCAGGGTCTGTGGGA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTGAGCAGCAGGGCTTTAGTCAGTCAAAACCAGGGTCTGTGGGA  900

seq1  CACAAGGATGGGACCAGAAAAGAAGCCTCTAGGAACTTAGTCATACTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGATGGGACCAGAAAAGAAGCCTCTAGGAACTTAGTCATACTTTC  950

seq1  ACTGAATACCCGAACAAAGGCCATCTTTAAATTTTCTTCTGGCTATAACT  1000
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ACTGAATACCCGAACAAAGGCCATCTTT-AATTTTCTTCTGGCTAT-ACT  998

seq1  TTTGCCCATGTTCTCATGTCCTAACCATAACTAAAAACTAATCTCTTTTA  1050
      |||||||||||||||||||||||| ||| ||| |||||||||||||||||
seq2  TTTGCCCATGTTCTCATGTCCTAA-CAT-ACT-AAAACTAATCTCTTTTA  1045

seq1  CACACACACACAAATGCATACAAATTGG--TTGCTGCTGTTTTGAAACAA  1098
      ||||||||||||||||||||||||||||  ||||||||||||  || || 
seq2  CACACACACACAAATGCATACAAATTGGGTTTGCTGCTGTTTGAAACCAG  1095

seq1  GA-TGAAAATTCTAGAAGGTAGTA-TTCAATGTC--GTATGTATTTCTAC  1144
      || || ||||||||| | |||||| |||||||||   |||||| ||||||
seq2  GATTGGAAATTCTAGGA-GTAGTATTTCAATGTCCGTTATGTA-TTCTAC  1143

seq1  TAATTCAAATTATCATGAAGCTT----AAGAGTT--AGAAAATAC  1183
      | |||| | |||||||||||| |    |||||||  |||||||||
seq2  TTATTCCAGTTATCATGAAGCCTTAAGAAGAGTTCGAGAAAATAC  1188

seq1: chr2_127555443_127556538
seq2: B6Ng01-299B15.g_69_1162 (reverse)

seq1  CCTG-CCGGGTCTG-CCCCTCCCTCCCCGCAGGTGGGGGCAGTCAACTCA  48
      |||| ||||||||| ||| ||||||||||||||| ||||||||| |||||
seq2  CCTGCCCGGGTCTGACCCTTCCCTCCCCGCAGGT-GGGGCAGTCCACTCA  49

seq1  CCAGCTCCGGTAGGAAGAAGGCAAAGGGGATGGTGAGGAACAAGGCGGCG  98
      |||||||||||| |||||| ||||||||||| |||| | |||||||||||
seq2  CCAGCTCCGGTAAGAAGAA-GCAAAGGGGAT-GTGAAG-ACAAGGCGGCG  96

seq1  ACCCCCGAGGGCACGTCAGGCGGGGCGTAGCTGGTGGCC-GGCGGTGTGT  147
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  ACCCCCGAGGGCACGTCA-GCGGGGCGTAGCTGGTGGCCGGGCGGTGTGT  145

seq1  CCCGGGAGGCCATGCTGTCACCTCTGCTGGCGTCTTTACTCCGTAGCACT  197
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCGGGAGGCCATGCTGTCACCTCTGCTGGCGTC-TTACTCCGTAGCACT  194

seq1  CGCCTGCGCCCGCAGCTGTTCAAGAATCACCTCCCGCCCGACAGACAGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCGCCCGCAGCTGTTCAAGAATCACCTCCCGCCCGACAGACAGAC  244

seq1  ACACCCATCGGTCGGAGGGACGTCGCCTGGGAGGGGAAAAGAAAGGTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATCGGTCGGAGGGACGTCGCCTGGGAGGGGAAAAGAAAGGTTCC  294

seq1  AGTAGAGCGGGGGCCC-TTCTGTGCACTGTGCTAGCCAGGAGAGGGGACA  346
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTAGAGCGGGGGCCCTTTCTGTGCACTGTGCTAGCCAGGAGAGGGGACA  344

seq1  GGACCAGCCTCGCAGAGGGTCTTTCTAGACTTTCCCTGCTAAGGAACTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCCTCGCAGAGGGTCTTTCTAGACTTTCCCTGCTAAGGAACTTT  394

seq1  GAATGCTGGAGCAAAGGACTCCAGAAGAGATGAAAGGAACAGCTTTGTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGAGCAAAGGACTCCAGAAGAGATGAAAGGAACAGCTTTGTAT  444

seq1  GTATGCTCCTGGTGATCTCTATGCTCAGAGTGTAAGCAAGGGCTCTTTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCCTGGTGATCTCTATGCTCAGAGTGTAAGCAAGGGCTCTTTTG  494

seq1  CTAAGATAAAGATTGTTTACTGAGGACCTACTGTGTGGTTAGCCACCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATAAAGATTGTTTACTGAGGACCTACTGTGTGGTTAGCCACCTTC  544

seq1  AGACACTTCTGAAGTTCAGATAGACCACCACCACGTGGCTTTGTTGTACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTCTGAAGTTCAGATAGACCACCACCACGTGGCTTTGTTGTACC  594

seq1  TTTCCAGTTAAGGTCACAGAGTGGTCACAAAAGCAGCATCTGCTTTTGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTTAAGGTCACAGAGTGGTCACAAAAGCAGCATCTGCTTTTGTC  644

seq1  CTCAGAGTCTAAATGAAGGATTGGAGCAGCCTGGTTTTCACCTCCCTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTCTAAATGAAGGATTGGAGCAGCCTGGTTTTCACCTCCCTCCT  694

seq1  CAGGTACTCTGAGTCCCTCTTGGGTCCTCCTCTCACTGTCGTTCTAGTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTCTGAGTCCCTCTTGGGTCCTCCTCTCACTGTCGTTCTAGTCC  744

seq1  AGCTAGGACACAGGGTTGGGACCAGGCAGTTCCTTCCTGCTTAGAGCCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGACACAGGGTTGGGACCAGGCAGTTCCTTCCTGCTTAGAGCCTG  794

seq1  GGGCTGGCTGCTTGGCTGTGCTTCCAGACCCAAAGCTCTTCCTTTCACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCTGCTTGGCTGTGCTTCCAGACCCAAAGCTCTTCCTTTCACAC  844

seq1  AACGCCAGGCAGGGCTGGAGACTGGGCCACCTTCTTCTTTAACAACCCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCCAGGCAGGGCTGGAGACTGGGCCACCTTCTTCTTTAACAACCCAC  894

seq1  TAACCTTGGTTTGTTTTCCCACCGCCCTGAGGGAAGGCCTGGCGCCCCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGGTTTGTTTTCCCACCGCCCTGAGGGAAGGCCTGGCGCCCCAG  944

seq1  AGCCTTCTTCCTCCCCTCTTCGGCTCCAGCAGGCCAGTTGAAAAGCCTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTCCTCCCCTCTTCGGCTCCAGCAGGCCAGTTGAAAAGCCTCC  994

seq1  TCAGGAGTAGGAGAGGAGGCATGGAAGAGTTGTCCCAAGGACTGGGGGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTAGGAGAGGAGGCATGGAAGAGTTGTCCCAAGGACTGGGGGAT  1044

seq1  GTCCTGCACAAGAGCCCTGTGTCTTGTTCCTTAGCAACAGCAGGGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCACAAGAGCCCTGTGTCTTGTTCCTTAGCAACAGCAGGGAATTC  1094